Wall clock time and date at job start Sun Mar 29 2020 21:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99999 * 2 1 4 4 H 1.48496 * 109.47053 * 269.99902 * 3 2 1 5 5 H 1.48496 * 109.47292 * 29.99894 * 3 2 1 6 6 H 1.48505 * 109.46980 * 149.99904 * 3 2 1 7 7 C 1.37878 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00412 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00124 * 179.97438 * 7 2 1 10 10 O 1.42891 * 109.47322 * 180.02562 * 9 7 2 11 11 C 1.35984 * 117.00178 * 180.02562 * 10 9 7 12 12 C 1.38723 * 119.99794 * 0.02562 * 11 10 9 13 13 C 1.38109 * 119.99883 * 179.69870 * 12 11 10 14 14 C 1.38717 * 120.00019 * 0.56086 * 13 12 11 15 15 O 1.35985 * 120.00303 * 179.71816 * 14 13 12 16 16 C 1.38678 * 119.99724 * 359.43902 * 14 13 12 17 17 N 1.48012 * 119.99979 * 180.25345 * 16 14 13 18 18 O 1.21799 * 120.00083 * 179.97438 * 17 16 14 19 19 O 1.21803 * 119.99761 * 0.02562 * 17 16 14 20 20 C 1.38155 * 120.00306 * 0.28303 * 16 14 13 21 21 H 0.96992 * 120.00008 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.46627 * 60.00109 * 9 7 2 23 23 H 1.09000 * 109.46978 * 300.00589 * 9 7 2 24 24 H 1.07999 * 120.00014 * 0.02562 * 12 11 10 25 25 H 1.07998 * 119.99713 * 180.27674 * 13 12 11 26 26 H 0.96701 * 113.99777 * 269.72859 * 15 14 13 27 27 H 1.08000 * 119.99698 * 179.97438 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 8 3.9878 -2.5413 0.0001 11 6 5.3360 -2.7196 0.0001 12 6 6.1810 -1.6194 0.0006 13 6 7.5502 -1.8004 0.0070 14 6 8.0804 -3.0822 0.0011 15 8 9.4285 -3.2604 0.0016 16 6 7.2356 -4.1820 0.0006 17 7 7.8013 -5.5497 0.0000 18 8 7.0593 -6.5156 0.0001 19 8 9.0088 -5.7093 0.0004 20 6 5.8660 -4.0010 0.0001 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6797 0.8895 23 1 3.8745 -0.6808 -0.8905 24 1 5.7682 -0.6214 0.0014 25 1 8.2080 -0.9439 0.0119 26 1 9.8187 -3.3117 -0.8817 27 1 5.2081 -4.8576 -0.0007 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015108572.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:11 Heat of formation + Delta-G solvation = -57.175654 kcal Electronic energy + Delta-G solvation = -16304.153278 eV Core-core repulsion = 13224.379325 eV Total energy + Delta-G solvation = -3079.773953 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.067 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.14403 -40.22822 -38.45786 -36.54039 -35.95852 -33.03445 -32.02151 -29.94758 -28.18235 -26.43069 -23.36166 -22.95840 -21.60192 -19.49824 -18.66278 -18.36138 -17.49860 -17.46215 -16.69270 -15.97096 -15.69267 -15.24898 -14.68468 -14.34303 -13.55888 -13.23016 -12.79056 -12.52104 -11.80173 -11.62001 -11.45571 -11.35944 -11.30076 -11.03943 -10.71192 -10.58047 -10.19995 -9.73123 -9.61585 -8.95045 -8.22207 -6.41821 -4.46376 -0.16290 0.90952 1.36265 1.43058 3.01435 3.05001 3.10482 3.17432 3.56393 3.74308 4.05882 4.37536 4.69018 4.82500 4.87252 4.92032 5.34828 5.49468 5.75957 5.82710 6.02741 6.08713 6.39869 6.43753 7.10386 7.24633 7.55978 7.73938 8.21281 8.66599 9.11487 10.70209 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.045028 B = 0.005553 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.681905 B = 5040.780647 C = 5644.758292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.081 3.919 3 Si 0.874 3.126 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.536 4.536 8 H 0.089 0.911 9 C 0.165 3.835 10 O -0.289 6.289 11 C 0.149 3.851 12 C -0.150 4.150 13 C -0.103 4.103 14 C 0.118 3.882 15 O -0.474 6.474 16 C -0.035 4.035 17 N 0.034 4.966 18 O -0.171 6.171 19 O -0.145 6.145 20 C -0.093 4.093 21 H 0.272 0.728 22 H 0.024 0.976 23 H 0.019 0.981 24 H 0.152 0.848 25 H 0.152 0.848 26 H 0.396 0.604 27 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.456 -1.439 -1.679 15.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.124 4.124 3 Si 0.699 3.301 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.574 4.574 8 H 0.107 0.893 9 C 0.091 3.909 10 O -0.200 6.200 11 C 0.100 3.900 12 C -0.169 4.169 13 C -0.122 4.122 14 C 0.071 3.929 15 O -0.285 6.285 16 C -0.119 4.119 17 N 0.553 4.447 18 O -0.383 6.383 19 O -0.364 6.364 20 C -0.113 4.113 21 H 0.082 0.918 22 H 0.042 0.958 23 H 0.037 0.963 24 H 0.170 0.830 25 H 0.169 0.831 26 H 0.253 0.747 27 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 14.726 -0.794 -1.073 14.786 hybrid contribution 0.566 0.823 -0.486 1.111 sum 15.292 0.029 -1.559 15.372 Atomic orbital electron populations 1.69831 1.06054 1.27700 1.48199 1.24701 0.94869 0.98715 0.94083 0.86895 0.80343 0.83719 0.79098 1.19488 1.20183 1.19031 1.20699 0.86951 0.96048 1.53655 0.89293 1.21202 0.97228 0.76232 0.96191 1.86274 1.14459 1.33966 1.85310 1.18886 0.85939 0.91903 0.93308 1.21796 0.93306 1.00336 1.01448 1.21237 0.95200 0.95796 0.99935 1.17904 0.83731 0.90021 1.01261 1.84913 1.15108 1.94703 1.33749 1.21225 0.93818 0.81525 1.15348 1.43382 1.00899 1.02751 0.97656 1.94552 1.58290 1.31356 1.54082 1.94531 0.97055 1.92308 1.52504 1.20058 0.91966 0.98037 1.01231 0.91762 0.95822 0.96304 0.82998 0.83053 0.74679 0.81916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.20 13.96 55.43 0.77 -24.43 15 2 C 0.08 2.16 5.47 -17.82 -0.10 2.06 15 3 Si 0.87 18.98 27.47 -169.99 -4.67 14.31 15 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 15 6 H -0.27 -5.33 6.54 56.52 0.37 -4.96 15 7 C -0.54 -14.39 9.99 -34.44 -0.34 -14.73 15 8 H 0.09 2.64 8.06 -52.49 -0.42 2.22 15 9 C 0.16 3.59 3.56 36.01 0.13 3.72 15 10 O -0.29 -5.92 10.12 -19.69 -0.20 -6.12 15 11 C 0.15 2.46 6.69 -39.24 -0.26 2.20 15 12 C -0.15 -2.07 9.03 -39.45 -0.36 -2.43 15 13 C -0.10 -1.18 9.98 -39.45 -0.39 -1.57 15 14 C 0.12 1.50 6.68 -39.24 -0.26 1.24 15 15 O -0.47 -5.30 11.51 -41.85 -0.48 -5.78 15 16 C -0.04 -0.52 6.86 -79.82 -0.55 -1.07 15 17 N 0.03 0.54 4.45 34.03 0.15 0.69 15 18 O -0.17 -2.85 18.45 -29.46 -0.54 -3.39 15 19 O -0.14 -2.27 17.23 -36.50 -0.63 -2.90 15 20 C -0.09 -1.44 9.49 -39.45 -0.37 -1.81 15 21 H 0.27 7.17 8.31 -40.82 -0.34 6.83 15 22 H 0.02 0.50 6.71 -51.93 -0.35 0.15 15 23 H 0.02 0.39 7.09 -51.93 -0.37 0.02 15 24 H 0.15 2.00 6.29 -52.49 -0.33 1.67 15 25 H 0.15 1.28 8.06 -52.49 -0.42 0.85 15 26 H 0.40 2.61 9.06 45.56 0.41 3.02 15 27 H 0.16 2.44 7.61 -52.49 -0.40 2.04 15 LS Contribution 252.89 15.07 3.81 3.81 Total: -1.00 -29.89 252.89 -5.34 -35.23 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -1.05 Total: 0.96 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -2.51 Total: -12.39 kcal Atomic # 7 Polarization: -24.66 SS G_CDS: 0.93 Total: -23.74 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -1.85 Total: -18.19 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.67 Total: 14.31 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.89 -5.34 -35.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015108572.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.946 kcal (2) G-P(sol) polarization free energy of solvation -29.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds