Wall clock time and date at job start Sun Mar 29 2020 21:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99999 * 2 1 4 4 H 1.48496 * 109.47053 * 269.99902 * 3 2 1 5 5 H 1.48496 * 109.47292 * 29.99894 * 3 2 1 6 6 H 1.48505 * 109.46980 * 149.99904 * 3 2 1 7 7 C 1.37878 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00412 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00124 * 179.97438 * 7 2 1 10 10 O 1.42891 * 109.47322 * 180.02562 * 9 7 2 11 11 C 1.35984 * 117.00178 * 180.02562 * 10 9 7 12 12 C 1.38723 * 119.99794 * 0.02562 * 11 10 9 13 13 C 1.38109 * 119.99883 * 179.69870 * 12 11 10 14 14 C 1.38717 * 120.00019 * 0.56086 * 13 12 11 15 15 O 1.35985 * 120.00303 * 179.71816 * 14 13 12 16 16 C 1.38678 * 119.99724 * 359.43902 * 14 13 12 17 17 N 1.48012 * 119.99979 * 180.25345 * 16 14 13 18 18 O 1.21799 * 120.00083 * 179.97438 * 17 16 14 19 19 O 1.21803 * 119.99761 * 0.02562 * 17 16 14 20 20 C 1.38155 * 120.00306 * 0.28303 * 16 14 13 21 21 H 0.96992 * 120.00008 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.46627 * 60.00109 * 9 7 2 23 23 H 1.09000 * 109.46978 * 300.00589 * 9 7 2 24 24 H 1.07999 * 120.00014 * 0.02562 * 12 11 10 25 25 H 1.07998 * 119.99713 * 180.27674 * 13 12 11 26 26 H 0.96701 * 113.99777 * 269.72859 * 15 14 13 27 27 H 1.08000 * 119.99698 * 179.97438 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 8 3.9878 -2.5413 0.0001 11 6 5.3360 -2.7196 0.0001 12 6 6.1810 -1.6194 0.0006 13 6 7.5502 -1.8004 0.0070 14 6 8.0804 -3.0822 0.0011 15 8 9.4285 -3.2604 0.0016 16 6 7.2356 -4.1820 0.0006 17 7 7.8013 -5.5497 0.0000 18 8 7.0593 -6.5156 0.0001 19 8 9.0088 -5.7093 0.0004 20 6 5.8660 -4.0010 0.0001 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6797 0.8895 23 1 3.8745 -0.6808 -0.8905 24 1 5.7682 -0.6214 0.0014 25 1 8.2080 -0.9439 0.0119 26 1 9.8187 -3.3117 -0.8817 27 1 5.2081 -4.8576 -0.0007 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015108572.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:11 Heat of formation + Delta-G solvation = -77.916630 kcal Electronic energy + Delta-G solvation = -16305.052674 eV Core-core repulsion = 13224.379325 eV Total energy + Delta-G solvation = -3080.673349 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.34893 -41.42448 -39.64426 -37.78380 -37.09554 -35.00366 -33.11835 -31.40380 -29.72575 -27.62276 -24.94151 -24.10059 -22.97292 -20.68365 -19.87553 -19.50503 -19.20128 -18.67294 -18.07972 -17.33662 -16.87975 -16.57446 -16.31618 -15.35621 -14.99945 -14.55062 -14.25046 -13.80498 -13.20912 -13.04690 -12.88783 -12.77709 -12.65529 -12.30824 -12.06515 -11.84212 -11.82283 -11.50088 -10.92125 -10.78239 -9.44172 -8.44017 -6.57132 -1.33320 -0.14605 0.18828 0.25903 1.33281 1.37751 1.46857 2.09260 2.22085 2.25378 2.75100 2.88717 3.37968 3.58390 3.74175 3.81418 4.22734 4.38800 4.43275 4.71672 4.72975 4.90211 4.95067 5.24654 5.27590 5.83527 6.44385 6.48214 6.52953 6.57044 7.06640 8.72599 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.045028 B = 0.005553 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.681905 B = 5040.780647 C = 5644.758292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.017 3.983 3 Si 0.954 3.046 4 H -0.255 1.255 5 H -0.278 1.278 6 H -0.228 1.228 7 C -0.561 4.561 8 H 0.032 0.968 9 C 0.175 3.825 10 O -0.323 6.323 11 C 0.119 3.881 12 C -0.136 4.136 13 C -0.083 4.083 14 C 0.143 3.857 15 O -0.477 6.477 16 C -0.051 4.051 17 N 0.034 4.966 18 O -0.215 6.215 19 O -0.124 6.124 20 C -0.101 4.101 21 H 0.276 0.724 22 H 0.042 0.958 23 H 0.043 0.957 24 H 0.168 0.832 25 H 0.198 0.802 26 H 0.420 0.580 27 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.225 1.270 -1.778 19.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.182 4.182 3 Si 0.773 3.227 4 H -0.179 1.179 5 H -0.203 1.203 6 H -0.151 1.151 7 C -0.598 4.598 8 H 0.050 0.950 9 C 0.102 3.898 10 O -0.236 6.236 11 C 0.071 3.929 12 C -0.155 4.155 13 C -0.102 4.102 14 C 0.095 3.905 15 O -0.291 6.291 16 C -0.135 4.135 17 N 0.551 4.449 18 O -0.416 6.416 19 O -0.351 6.351 20 C -0.121 4.121 21 H 0.085 0.915 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.185 0.815 25 H 0.215 0.785 26 H 0.282 0.718 27 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 18.464 1.827 -1.191 18.592 hybrid contribution -0.450 -0.112 -0.465 0.657 sum 18.014 1.715 -1.656 18.171 Atomic orbital electron populations 1.70014 1.08587 1.29239 1.49729 1.25870 0.95821 1.03640 0.92906 0.85645 0.80022 0.76792 0.80197 1.17937 1.20306 1.15086 1.21009 0.90261 0.94328 1.54239 0.94998 1.20915 0.93754 0.77454 0.97725 1.86186 1.17310 1.33175 1.86974 1.19019 0.84590 0.93174 0.96111 1.22016 0.93985 0.99837 0.99690 1.21621 0.94541 0.96392 0.97608 1.18087 0.84272 0.89702 0.98425 1.84860 1.13837 1.94555 1.35849 1.21358 0.93852 0.81253 1.17080 1.43562 1.00822 1.03217 0.97330 1.94568 1.58435 1.32131 1.56500 1.94489 0.97117 1.92500 1.50986 1.19946 0.92482 0.97705 1.01945 0.91477 0.94017 0.93984 0.81478 0.78529 0.71774 0.83176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.66 13.96 21.45 0.30 -55.36 15 2 C 0.02 0.91 5.47 84.66 0.46 1.38 15 3 Si 0.95 37.68 27.47 68.60 1.88 39.56 15 4 H -0.26 -9.46 7.11 99.48 0.71 -8.76 15 5 H -0.28 -10.96 7.11 99.48 0.71 -10.25 15 6 H -0.23 -7.60 6.54 99.48 0.65 -6.95 15 7 C -0.56 -31.22 9.99 25.60 0.26 -30.96 15 8 H 0.03 2.05 8.06 -2.91 -0.02 2.03 15 9 C 0.17 7.47 3.56 71.24 0.25 7.72 15 10 O -0.32 -13.49 10.12 -93.37 -0.95 -14.44 15 11 C 0.12 3.80 6.69 22.49 0.15 3.95 15 12 C -0.14 -3.23 9.03 22.36 0.20 -3.03 15 13 C -0.08 -1.46 9.98 22.35 0.22 -1.23 15 14 C 0.14 3.04 6.68 22.49 0.15 3.19 15 15 O -0.48 -8.30 11.51 -72.19 -0.83 -9.13 15 16 C -0.05 -1.42 6.86 36.46 0.25 -1.17 15 17 N 0.03 1.07 4.45 -46.26 -0.21 0.86 15 18 O -0.21 -7.36 18.45 18.89 0.35 -7.01 15 19 O -0.12 -3.64 17.23 25.61 0.44 -3.20 15 20 C -0.10 -3.12 9.49 22.35 0.21 -2.91 15 21 H 0.28 15.00 8.31 -92.71 -0.77 14.22 15 22 H 0.04 1.62 6.71 -2.38 -0.02 1.61 15 23 H 0.04 1.60 7.09 -2.39 -0.02 1.58 15 24 H 0.17 3.50 6.29 -2.91 -0.02 3.48 15 25 H 0.20 1.78 8.06 -2.91 -0.02 1.76 15 26 H 0.42 3.33 9.06 -74.06 -0.67 2.65 15 27 H 0.15 4.86 7.61 -2.91 -0.02 4.84 15 Total: -1.00 -69.22 252.89 3.65 -65.56 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 0.50 Total: 6.21 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 2.16 Total: -23.06 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.09 Total: -54.50 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -0.99 Total: -33.78 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 1.88 Total: 39.56 kcal Total: -69.22 3.65 -65.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015108572.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.352 kcal (2) G-P(sol) polarization free energy of solvation -69.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds