Wall clock time and date at job start Sun Mar 29 2020 22:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.43198 * 119.99787 * 168.96110 * 3 2 1 5 5 N 3.51037 * 140.68893 * 168.96048 * 2 1 3 6 6 C 1.37727 * 120.00038 * 348.95653 * 3 2 1 7 7 N 1.36075 * 119.99960 * 0.02562 * 6 3 2 8 8 C 1.38926 * 119.99580 * 179.97438 * 7 6 3 9 9 C 1.39575 * 119.83594 * 179.97438 * 8 7 6 10 10 C 1.36331 * 120.15879 * 180.27611 * 9 8 7 11 11 C 1.40900 * 119.83381 * 359.52450 * 10 9 8 12 12 C 1.41100 * 120.15396 * 180.23244 * 11 10 9 13 13 H 1.07998 * 119.99643 * 155.24207 * 12 11 10 14 14 C 1.39886 * 119.99967 * 335.23668 * 12 11 10 15 15 N 1.30876 * 120.00355 * 342.01931 * 14 12 11 16 16 Si 1.86808 * 119.99875 * 162.01105 * 14 12 11 17 17 H 1.48500 * 109.46764 * 94.65510 * 16 14 12 18 18 H 1.48495 * 109.47113 * 214.65632 * 16 14 12 19 19 H 1.48502 * 109.46990 * 334.65814 * 16 14 12 20 20 C 1.40900 * 119.68721 * 0.47746 * 11 10 9 21 21 C 1.36327 * 119.83586 * 359.74949 * 20 11 10 22 22 H 1.08001 * 120.00069 * 180.02562 * 6 3 2 23 23 H 0.96995 * 120.00617 * 359.97438 * 7 6 3 24 24 H 1.07998 * 119.92405 * 0.02562 * 9 8 7 25 25 H 1.07994 * 120.08115 * 179.74961 * 10 9 8 26 26 H 0.97004 * 120.00193 * 179.97438 * 15 14 12 27 27 H 1.08005 * 120.08420 * 179.73178 * 20 11 10 28 28 H 1.07996 * 119.91703 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2834 1.2182 -0.2375 5 7 3.8520 2.1828 -0.4259 6 6 3.2572 -1.1697 0.2285 7 7 2.5773 -2.3267 0.4537 8 6 3.2725 -3.5073 0.6836 9 6 2.5718 -4.6921 0.9148 10 6 3.2474 -5.8533 1.1467 11 6 4.6564 -5.8573 1.1427 12 6 5.3624 -7.0563 1.3771 13 1 6.3667 -7.1745 0.9978 14 6 4.7617 -8.0917 2.1009 15 7 3.7184 -7.8456 2.8518 16 14 5.4485 -9.8257 1.9955 17 1 6.3912 -10.0539 3.1200 18 1 4.3350 -10.8049 2.0765 19 1 6.1652 -9.9967 0.7062 20 6 5.3570 -4.6574 0.9087 21 6 4.6682 -3.5029 0.6829 22 1 4.3372 -1.1692 0.2289 23 1 1.6074 -2.3273 0.4537 24 1 1.4919 -4.6882 0.9139 25 1 2.7040 -6.7685 1.3295 26 1 3.3016 -8.5637 3.3534 27 1 6.4370 -4.6523 0.9085 28 1 5.2038 -2.5824 0.5037 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015241848.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:14 Heat of formation + Delta-G solvation = 74.804270 kcal Electronic energy + Delta-G solvation = -14697.466364 eV Core-core repulsion = 12098.850256 eV Total energy + Delta-G solvation = -2598.616109 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.075 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.60803 -38.69575 -37.26462 -36.97668 -35.25170 -32.77731 -31.48900 -30.40184 -26.80735 -24.98656 -22.90948 -22.30225 -20.90211 -19.32193 -18.71702 -17.76869 -16.90716 -15.97742 -15.42591 -15.39500 -14.93695 -14.72186 -14.37812 -14.32691 -14.08086 -13.84784 -13.78697 -13.63308 -13.24872 -13.04000 -12.99618 -12.74910 -12.46263 -12.17852 -11.68543 -11.31135 -11.01144 -9.79693 -9.52340 -8.71918 -8.43439 -6.23178 0.03254 1.07778 1.14368 1.43009 1.52847 1.54502 1.58378 1.84771 1.91244 2.21176 2.33765 2.70187 2.91803 3.20170 3.56064 3.72972 4.19783 4.31485 4.43906 4.64030 4.97963 5.05855 5.13926 5.26707 5.54884 5.60634 5.72283 6.05827 6.18233 6.35238 6.41282 6.63213 6.66738 6.84359 6.91799 6.99859 8.28365 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.051723 B = 0.004433 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.211659 B = 6314.337953 C = 6776.277395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.291 3.709 3 C -0.199 4.199 4 C 0.318 3.682 5 N -0.492 5.492 6 C 0.311 3.689 7 N -0.586 5.586 8 C -0.007 4.007 9 C -0.115 4.115 10 C -0.170 4.170 11 C 0.072 3.928 12 C -0.485 4.485 13 H 0.081 0.919 14 C 0.036 3.964 15 N -0.818 5.818 16 Si 0.976 3.024 17 H -0.265 1.265 18 H -0.270 1.270 19 H -0.258 1.258 20 C -0.213 4.213 21 C -0.101 4.101 22 H 0.208 0.792 23 H 0.411 0.589 24 H 0.113 0.887 25 H 0.103 0.897 26 H 0.289 0.711 27 H 0.112 0.888 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.641 2.196 -2.304 3.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C -0.020 4.020 3 C -0.220 4.220 4 C 0.005 3.995 5 N -0.171 5.171 6 C 0.162 3.838 7 N -0.187 5.187 8 C -0.101 4.101 9 C -0.135 4.135 10 C -0.190 4.190 11 C 0.069 3.931 12 C -0.514 4.514 13 H 0.099 0.901 14 C -0.180 4.180 15 N -0.443 5.443 16 Si 0.797 3.203 17 H -0.190 1.190 18 H -0.195 1.195 19 H -0.181 1.181 20 C -0.233 4.233 21 C -0.121 4.121 22 H 0.224 0.776 23 H 0.248 0.752 24 H 0.131 0.869 25 H 0.121 0.879 26 H 0.100 0.900 27 H 0.130 0.870 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.695 3.330 -2.372 4.147 hybrid contribution -0.271 -1.269 0.302 1.332 sum 0.424 2.061 -2.070 2.951 Atomic orbital electron populations 1.81286 1.12987 1.07506 1.15341 1.25285 0.92062 0.93384 0.91304 1.12178 0.82083 0.88962 1.38731 1.24474 0.92495 0.91598 0.90896 1.81266 1.09384 1.10963 1.15503 1.22448 0.99785 0.81550 0.79984 1.41733 1.09980 1.05501 1.61512 1.17274 0.91552 0.85026 1.16223 1.20305 0.98599 0.92054 1.02529 1.20870 0.94700 0.97256 1.06212 1.18048 0.92548 0.93208 0.89279 1.19873 1.01967 0.99177 1.30391 0.90068 1.26702 0.94407 1.04695 0.92203 1.69863 1.19257 1.35963 1.19241 0.85272 0.78850 0.76311 0.79878 1.18957 1.19483 1.18144 1.20855 0.98984 0.92286 1.11152 1.20445 0.91127 0.98943 1.01551 0.77579 0.75220 0.86940 0.87908 0.90021 0.86990 0.83433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -14.81 18.54 19.00 0.35 -14.46 15 2 C 0.29 7.38 13.95 88.33 1.23 8.61 15 3 C -0.20 -4.02 5.78 -20.91 -0.12 -4.14 15 4 C 0.32 7.51 15.33 88.34 1.35 8.87 15 5 N -0.49 -13.98 18.53 19.00 0.35 -13.63 15 6 C 0.31 5.40 9.83 83.91 0.82 6.23 15 7 N -0.59 -13.17 5.34 -185.20 -0.99 -14.16 15 8 C -0.01 -0.20 6.63 38.66 0.26 0.05 15 9 C -0.11 -4.20 9.82 22.15 0.22 -3.98 15 10 C -0.17 -7.56 8.64 22.48 0.19 -7.37 15 11 C 0.07 3.28 5.57 -21.27 -0.12 3.16 15 12 C -0.49 -22.86 9.03 23.37 0.21 -22.65 15 13 H 0.08 3.66 7.91 -2.91 -0.02 3.64 15 14 C 0.04 1.62 5.13 85.23 0.44 2.06 15 15 N -0.82 -38.54 10.97 21.82 0.24 -38.31 15 16 Si 0.98 34.40 29.60 68.60 2.03 36.43 15 17 H -0.26 -9.08 7.11 99.48 0.71 -8.38 15 18 H -0.27 -9.25 7.11 99.48 0.71 -8.54 15 19 H -0.26 -8.93 7.11 99.48 0.71 -8.22 15 20 C -0.21 -8.14 9.74 22.48 0.22 -7.92 15 21 C -0.10 -3.07 9.23 22.14 0.20 -2.86 15 22 H 0.21 2.37 5.86 -2.91 -0.02 2.35 15 23 H 0.41 9.04 7.38 -92.71 -0.68 8.35 15 24 H 0.11 3.64 8.06 -2.91 -0.02 3.62 15 25 H 0.10 4.94 6.17 -2.91 -0.02 4.92 15 26 H 0.29 12.39 8.30 -92.71 -0.77 11.62 15 27 H 0.11 3.98 8.06 -2.91 -0.02 3.96 15 28 H 0.15 3.02 5.92 -2.91 -0.02 3.01 15 Total: -1.00 -55.18 270.63 7.44 -47.73 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.54 Total: 16.34 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 4.91 Total: -19.95 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -0.04 Total: -80.56 kcal Atomic # 14 Polarization: 34.40 SS G_CDS: 2.03 Total: 36.43 kcal Total: -55.18 7.44 -47.73 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015241848.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.539 kcal (2) G-P(sol) polarization free energy of solvation -55.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds