Wall clock time and date at job start Sun Mar 29 2020 22:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00083 * 2 1 4 4 H 1.48494 * 109.47507 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47373 * 300.00419 * 3 2 1 6 6 H 1.48504 * 109.47219 * 60.00037 * 3 2 1 7 7 C 1.38808 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00044 * 197.01432 * 7 2 1 9 9 N 1.36942 * 120.00150 * 17.01378 * 7 2 1 10 10 C 1.47083 * 120.87894 * 26.57511 * 9 7 2 11 11 C 1.53232 * 108.52123 * 128.83551 * 10 9 7 12 12 N 1.46908 * 109.34024 * 53.82809 * 11 10 9 13 13 C 1.38607 * 110.99634 * 172.74290 * 12 11 10 14 14 N 1.29685 * 124.95306 * 359.69843 * 13 12 11 15 15 C 1.32126 * 116.86518 * 179.80865 * 14 13 12 16 16 C 1.33321 * 114.57793 * 0.47755 * 15 14 13 17 17 S 1.70965 * 124.94429 * 179.97438 * 13 12 11 18 18 C 1.46896 * 111.26619 * 296.89273 * 12 11 10 19 19 C 1.47073 * 120.87991 * 206.59503 * 9 7 2 20 20 H 0.96998 * 119.99784 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.62686 * 9.12255 * 10 9 7 22 22 H 1.08999 * 109.62411 * 248.54665 * 10 9 7 23 23 H 1.09001 * 109.49288 * 173.78352 * 11 10 9 24 24 H 1.08997 * 109.49610 * 293.84347 * 11 10 9 25 25 H 1.07993 * 122.70979 * 180.22026 * 15 14 13 26 26 H 1.08000 * 125.94949 * 179.75087 * 16 15 14 27 27 H 1.09000 * 109.48714 * 183.06266 * 18 12 11 28 28 H 1.08995 * 109.49541 * 303.14688 * 18 12 11 29 29 H 1.09001 * 109.62935 * 111.45700 * 19 9 7 30 30 H 1.08994 * 109.63209 * 350.87119 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0548 -1.2227 0.2731 9 7 1.3705 -2.3620 -0.3481 10 6 0.2046 -2.3416 -1.2445 11 6 0.4401 -3.3517 -2.3724 12 7 0.7547 -4.6642 -1.7922 13 6 0.8147 -5.6401 -2.7747 14 7 0.6152 -5.4342 -4.0395 15 6 0.7161 -6.4820 -4.8381 16 6 1.0046 -7.6263 -4.2178 17 16 1.1558 -7.2918 -2.4948 18 6 2.0023 -4.6193 -1.0179 19 6 1.8308 -3.6610 0.1656 20 1 -0.4850 0.8400 0.0004 21 1 0.0843 -1.3436 -1.6660 22 1 -0.6906 -2.6171 -0.6871 23 1 -0.4588 -3.4304 -2.9838 24 1 1.2730 -3.0182 -2.9914 25 1 0.5722 -6.4174 -5.9065 26 1 1.1249 -8.5903 -4.6896 27 1 2.2362 -5.6172 -0.6470 28 1 2.8136 -4.2683 -1.6555 29 1 1.0918 -4.0634 0.8584 30 1 2.7855 -3.5354 0.6762 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019426157.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:24 Heat of formation + Delta-G solvation = 67.465128 kcal Electronic energy + Delta-G solvation = -15032.985653 eV Core-core repulsion = 12569.495246 eV Total energy + Delta-G solvation = -2463.490407 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.11647 -39.26357 -36.23871 -33.37151 -31.89767 -30.54770 -28.44543 -25.87021 -24.64879 -24.34797 -21.50227 -20.53168 -19.39714 -18.61019 -17.23064 -16.72407 -16.25040 -15.78779 -15.71117 -15.39058 -15.18339 -15.01581 -14.27896 -13.95473 -13.35462 -13.10404 -12.70136 -12.43018 -12.38934 -12.15549 -12.10028 -11.81068 -11.64236 -11.07532 -10.64551 -10.53491 -10.22225 -9.07876 -8.77814 -7.91140 -5.36340 -0.15628 0.24876 0.87687 1.46745 1.48974 1.59281 1.89003 2.49260 2.65650 3.26104 3.54470 3.60125 4.10441 4.18594 4.33665 4.41468 4.48557 4.53521 4.63631 4.78182 4.80355 5.01486 5.14992 5.27552 5.56131 5.58699 5.66818 5.90063 6.32822 6.88669 7.08261 7.77090 8.31466 9.17118 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.054610 B = 0.006070 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.601494 B = 4612.043599 C = 4813.502720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.265 4.265 8 H 0.074 0.926 9 N -0.614 5.614 10 C 0.185 3.815 11 C 0.073 3.927 12 N -0.454 5.454 13 C 0.202 3.798 14 N -0.556 5.556 15 C 0.041 3.959 16 C -0.272 4.272 17 S 0.160 5.840 18 C 0.056 3.944 19 C 0.145 3.855 20 H 0.251 0.749 21 H 0.065 0.935 22 H 0.005 0.995 23 H 0.075 0.925 24 H 0.031 0.969 25 H 0.196 0.804 26 H 0.212 0.788 27 H 0.105 0.895 28 H 0.041 0.959 29 H 0.028 0.972 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.716 -15.517 -6.659 17.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.394 4.394 8 H 0.092 0.908 9 N -0.338 5.338 10 C 0.059 3.941 11 C -0.057 4.057 12 N -0.175 5.175 13 C -0.166 4.166 14 N -0.279 5.279 15 C -0.110 4.110 16 C -0.412 4.412 17 S 0.411 5.589 18 C -0.073 4.073 19 C 0.019 3.981 20 H 0.060 0.940 21 H 0.084 0.916 22 H 0.023 0.977 23 H 0.093 0.907 24 H 0.050 0.950 25 H 0.213 0.787 26 H 0.229 0.771 27 H 0.123 0.877 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.361 -15.526 -5.551 16.828 hybrid contribution 0.244 1.491 -1.320 2.006 sum 3.605 -14.035 -6.871 16.037 Atomic orbital electron populations 1.70183 1.06751 1.25979 1.55303 1.25815 0.96057 1.01609 1.01038 0.85180 0.78650 0.79668 0.76761 1.18924 1.21815 1.21772 1.19587 0.93094 0.85673 1.41092 0.90848 1.44417 1.34071 1.02407 1.52870 1.20681 0.88301 0.96284 0.88855 1.22465 1.00157 0.86389 0.96687 1.59019 1.33056 1.05703 1.19678 1.25527 1.01595 0.98435 0.91068 1.66853 1.23540 1.35544 1.01945 1.21953 1.00713 0.86548 1.01738 1.27208 1.14086 1.05137 0.94720 1.83581 1.66743 1.00285 1.08320 1.22876 0.86949 1.01674 0.95755 1.21163 0.98930 0.84958 0.93055 0.93953 0.91634 0.97681 0.90696 0.95023 0.78720 0.77120 0.87729 0.94066 0.95398 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.71 11.15 21.65 0.24 -55.47 16 2 C -0.05 -2.78 4.94 84.86 0.42 -2.36 16 3 Si 0.97 44.80 29.59 68.60 2.03 46.83 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 7 C -0.26 -14.51 9.63 84.03 0.81 -13.70 16 8 H 0.07 3.86 7.88 -2.91 -0.02 3.84 16 9 N -0.61 -31.24 3.04 -698.15 -2.12 -33.36 16 10 C 0.19 9.37 5.42 86.35 0.47 9.84 16 11 C 0.07 3.15 5.01 86.38 0.43 3.58 16 12 N -0.45 -17.09 4.69 -707.84 -3.32 -20.41 16 13 C 0.20 6.68 6.73 179.32 1.21 7.89 16 14 N -0.56 -18.59 9.42 -202.03 -1.90 -20.49 16 15 C 0.04 0.99 11.34 83.54 0.95 1.94 16 16 C -0.27 -5.32 11.34 66.71 0.76 -4.57 16 17 S 0.16 3.78 22.23 -56.49 -1.26 2.52 16 18 C 0.06 1.92 5.49 86.39 0.47 2.40 16 19 C 0.14 5.90 6.69 86.35 0.58 6.48 16 20 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 21 H 0.07 3.69 6.12 -2.39 -0.01 3.68 16 22 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 23 H 0.07 3.16 7.81 -2.39 -0.02 3.14 16 24 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.20 3.54 8.06 -2.91 -0.02 3.52 16 26 H 0.21 2.38 8.06 -2.91 -0.02 2.35 16 27 H 0.10 2.88 7.28 -2.39 -0.02 2.86 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 2.98 7.95 -2.39 -0.02 2.96 16 Total: -1.00 -65.86 262.06 0.89 -64.96 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: 1.13 Total: 3.94 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 6.09 Total: 11.49 kcal Atomic # 7 Polarization: -122.64 SS G_CDS: -7.10 Total: -129.74 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 3.78 SS G_CDS: -1.26 Total: 2.52 kcal Total: -65.86 0.89 -64.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019426157.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.427 kcal (2) G-P(sol) polarization free energy of solvation -65.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds