Wall clock time and date at job start Sun Mar 29 2020 22:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.50703 * 109.47219 * 269.99493 * 3 2 1 5 5 H 1.07996 * 119.99587 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00012 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00204 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99711 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.47488 * 59.99905 * 8 6 4 10 10 H 1.48498 * 109.46955 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47344 * 299.99422 * 8 6 4 12 12 C 1.34784 * 119.99893 * 179.97438 * 2 1 3 13 13 O 1.21274 * 119.99897 * 179.73022 * 12 2 1 14 14 C 1.50695 * 119.99635 * 0.02562 * 12 2 1 15 15 C 1.50707 * 109.47011 * 180.02562 * 14 12 2 16 16 C 1.33381 * 125.20456 * 89.99528 * 15 14 12 17 17 C 1.38426 * 114.92297 * 179.97438 * 16 15 14 18 18 C 1.33389 * 114.92012 * 0.02562 * 17 16 15 19 19 S 1.75882 * 125.20014 * 269.69727 * 15 14 12 20 20 H 1.08996 * 109.47008 * 270.00543 * 1 2 3 21 21 H 1.08997 * 109.46865 * 30.00228 * 1 2 3 22 22 H 1.08998 * 109.47058 * 149.99741 * 1 2 3 23 23 H 1.08998 * 109.47416 * 29.99674 * 3 2 1 24 24 H 1.09008 * 109.47058 * 150.00274 * 3 2 1 25 25 H 0.97000 * 120.00290 * 180.02562 * 7 6 4 26 26 H 1.09005 * 109.47403 * 300.00056 * 14 12 2 27 27 H 1.09002 * 109.47422 * 60.00295 * 14 12 2 28 28 H 1.08003 * 122.54135 * 359.96556 * 16 15 14 29 29 H 1.07993 * 122.54049 * 180.02562 * 17 16 15 30 30 H 1.07994 * 125.20424 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0983 1.0956 -2.2416 6 6 3.1271 2.8773 -1.6727 7 7 3.5552 3.6170 -0.6732 8 14 3.4379 3.4168 -3.4340 9 1 2.1403 3.5952 -4.1334 10 1 4.1805 4.7028 -3.4340 11 1 4.2397 2.3817 -4.1346 12 6 2.1389 -1.1673 0.0005 13 8 3.3516 -1.1673 -0.0044 14 6 1.3853 -2.4723 0.0005 15 6 2.3646 -3.6178 0.0018 16 6 2.8634 -4.2018 1.0923 17 6 3.7482 -5.2376 0.8464 18 6 3.9682 -5.4944 -0.4439 19 16 3.0187 -4.3941 -1.4345 20 1 -0.3633 0.0001 1.0276 21 1 -0.3633 0.8900 -0.5139 22 1 -0.3633 -0.8899 -0.5139 23 1 1.6085 2.0284 0.5138 24 1 3.1500 1.1383 0.5138 25 1 4.0321 4.4429 -0.8504 26 1 0.7582 -2.5298 0.8903 27 1 0.7590 -2.5302 -0.8897 28 1 2.5974 -3.8900 2.0915 29 1 4.2243 -5.7955 1.6391 30 1 4.6249 -6.2637 -0.8224 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019833754.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:14 Heat of formation + Delta-G solvation = -2.060869 kcal Electronic energy + Delta-G solvation = -14534.645206 eV Core-core repulsion = 12035.847174 eV Total energy + Delta-G solvation = -2498.798031 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.10530 -37.40772 -34.77647 -32.71863 -31.79248 -28.14200 -26.75939 -25.58378 -23.47263 -22.27215 -19.18007 -18.52127 -16.91651 -16.49345 -16.24615 -15.48253 -14.99543 -14.68188 -14.15149 -13.14462 -12.98215 -12.69418 -12.31629 -12.21607 -12.16583 -12.02922 -11.80970 -11.31387 -11.17247 -10.88674 -10.57329 -10.53204 -10.14797 -9.63571 -9.02410 -8.42814 -8.39225 -8.24877 -7.63678 -6.03236 -4.08079 1.18078 1.83578 2.20114 2.92396 3.32593 3.37026 3.38488 3.45339 4.03036 4.46079 4.86632 5.17827 5.22356 5.31029 5.35920 5.55810 5.61098 5.72790 5.80066 5.92675 6.20335 6.27693 6.44934 6.65718 7.05902 7.44942 7.54430 7.93011 8.24360 8.41195 8.90899 9.10072 9.56951 11.04864 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.031625 B = 0.006173 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.159254 B = 4534.602165 C = 4902.061668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.604 5.604 3 C 0.246 3.754 4 C -0.527 4.527 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.504 3.496 13 O -0.529 6.529 14 C -0.074 4.074 15 C -0.141 4.141 16 C -0.139 4.139 17 C -0.130 4.130 18 C -0.224 4.224 19 S 0.106 5.894 20 H 0.045 0.955 21 H 0.074 0.926 22 H 0.056 0.944 23 H 0.032 0.968 24 H 0.043 0.957 25 H 0.264 0.736 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.128 -15.224 1.973 16.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.337 5.337 3 C 0.127 3.873 4 C -0.566 4.566 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.289 3.711 13 O -0.406 6.406 14 C -0.116 4.116 15 C -0.259 4.259 16 C -0.169 4.169 17 C -0.161 4.161 18 C -0.359 4.359 19 S 0.369 5.631 20 H 0.063 0.937 21 H 0.093 0.907 22 H 0.075 0.925 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.123 0.877 27 H 0.116 0.884 28 H 0.154 0.846 29 H 0.154 0.846 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.557 -14.824 0.456 15.838 hybrid contribution 0.379 0.244 0.534 0.699 sum -5.178 -14.580 0.990 15.504 Atomic orbital electron populations 1.21657 0.81461 1.02630 1.00456 1.48159 1.06149 1.07723 1.71630 1.19287 0.92555 0.78001 0.97495 1.21394 1.36606 1.06272 0.92283 0.92552 1.24933 0.95324 0.96390 0.97435 1.69921 1.38325 1.14390 1.30798 0.86561 0.78370 0.77837 0.84685 1.20239 1.21141 1.20160 1.20128 0.88201 0.84666 0.78099 1.90696 1.13664 1.86970 1.49238 1.20289 0.96400 0.90269 1.04645 1.23896 1.04441 1.01656 0.95905 1.20014 0.99768 0.97942 0.99135 1.20071 1.00402 0.99377 0.96295 1.25524 1.07626 1.05799 0.96994 1.84215 1.40853 1.28209 1.09783 0.93671 0.90681 0.92487 0.94977 0.93851 0.92656 0.87739 0.88431 0.84619 0.84643 0.82256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 10.24 59.85 0.61 1.89 16 2 N -0.60 -12.89 2.86 -182.96 -0.52 -13.41 16 3 C 0.25 6.52 5.16 -5.19 -0.03 6.49 16 4 C -0.53 -15.14 9.39 -34.44 -0.32 -15.46 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 8 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 C 0.50 10.61 7.67 -10.98 -0.08 10.53 16 13 O -0.53 -13.67 15.61 5.56 0.09 -13.59 16 14 C -0.07 -1.12 4.75 -29.03 -0.14 -1.26 16 15 C -0.14 -2.20 5.00 -36.00 -0.18 -2.38 16 16 C -0.14 -2.00 10.05 -41.21 -0.41 -2.42 16 17 C -0.13 -1.69 10.18 -41.21 -0.42 -2.11 16 18 C -0.22 -2.88 11.23 29.04 0.33 -2.55 16 19 S 0.11 1.55 23.33 -107.50 -2.51 -0.95 16 20 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 22 H 0.06 0.70 6.44 -51.93 -0.33 0.37 16 23 H 0.03 0.85 8.07 -51.93 -0.42 0.44 16 24 H 0.04 1.30 7.43 -51.92 -0.39 0.91 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.10 1.26 8.11 -51.93 -0.42 0.84 16 27 H 0.10 1.29 7.40 -51.93 -0.38 0.90 16 28 H 0.14 1.74 8.06 -52.48 -0.42 1.32 16 29 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.16 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 279.02 15.07 4.20 4.20 Total: -1.00 -33.97 279.02 -7.37 -41.33 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -3.60 Total: -2.89 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -0.74 Total: -5.61 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.21 Total: -39.59 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.09 Total: -13.59 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.51 Total: -0.95 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -33.97 -7.37 -41.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833754.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.273 kcal (2) G-P(sol) polarization free energy of solvation -33.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds