Wall clock time and date at job start Sun Mar 29 2020 22:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.50703 * 109.47219 * 269.99493 * 3 2 1 5 5 H 1.07996 * 119.99587 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00012 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00204 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99711 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.47488 * 59.99905 * 8 6 4 10 10 H 1.48498 * 109.46955 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47344 * 299.99422 * 8 6 4 12 12 C 1.34784 * 119.99893 * 179.97438 * 2 1 3 13 13 O 1.21274 * 119.99897 * 179.73022 * 12 2 1 14 14 C 1.50695 * 119.99635 * 0.02562 * 12 2 1 15 15 C 1.50707 * 109.47011 * 180.02562 * 14 12 2 16 16 C 1.33381 * 125.20456 * 89.99528 * 15 14 12 17 17 C 1.38426 * 114.92297 * 179.97438 * 16 15 14 18 18 C 1.33389 * 114.92012 * 0.02562 * 17 16 15 19 19 S 1.75882 * 125.20014 * 269.69727 * 15 14 12 20 20 H 1.08996 * 109.47008 * 270.00543 * 1 2 3 21 21 H 1.08997 * 109.46865 * 30.00228 * 1 2 3 22 22 H 1.08998 * 109.47058 * 149.99741 * 1 2 3 23 23 H 1.08998 * 109.47416 * 29.99674 * 3 2 1 24 24 H 1.09008 * 109.47058 * 150.00274 * 3 2 1 25 25 H 0.97000 * 120.00290 * 180.02562 * 7 6 4 26 26 H 1.09005 * 109.47403 * 300.00056 * 14 12 2 27 27 H 1.09002 * 109.47422 * 60.00295 * 14 12 2 28 28 H 1.08003 * 122.54135 * 359.96556 * 16 15 14 29 29 H 1.07993 * 122.54049 * 180.02562 * 17 16 15 30 30 H 1.07994 * 125.20424 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0983 1.0956 -2.2416 6 6 3.1271 2.8773 -1.6727 7 7 3.5552 3.6170 -0.6732 8 14 3.4379 3.4168 -3.4340 9 1 2.1403 3.5952 -4.1334 10 1 4.1805 4.7028 -3.4340 11 1 4.2397 2.3817 -4.1346 12 6 2.1389 -1.1673 0.0005 13 8 3.3516 -1.1673 -0.0044 14 6 1.3853 -2.4723 0.0005 15 6 2.3646 -3.6178 0.0018 16 6 2.8634 -4.2018 1.0923 17 6 3.7482 -5.2376 0.8464 18 6 3.9682 -5.4944 -0.4439 19 16 3.0187 -4.3941 -1.4345 20 1 -0.3633 0.0001 1.0276 21 1 -0.3633 0.8900 -0.5139 22 1 -0.3633 -0.8899 -0.5139 23 1 1.6085 2.0284 0.5138 24 1 3.1500 1.1383 0.5138 25 1 4.0321 4.4429 -0.8504 26 1 0.7582 -2.5298 0.8903 27 1 0.7590 -2.5302 -0.8897 28 1 2.5974 -3.8900 2.0915 29 1 4.2243 -5.7955 1.6391 30 1 4.6249 -6.2637 -0.8224 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833754.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:14 Heat of formation + Delta-G solvation = -24.122636 kcal Electronic energy + Delta-G solvation = -14535.601876 eV Core-core repulsion = 12035.847174 eV Total energy + Delta-G solvation = -2499.754701 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.69925 -38.52944 -36.55276 -34.77322 -33.11206 -29.96136 -28.03766 -27.15976 -25.07659 -23.76899 -20.41162 -19.93219 -18.69840 -18.09715 -17.78891 -16.99405 -16.55241 -16.12711 -15.90749 -14.57495 -14.49314 -13.96389 -13.81257 -13.56730 -13.45703 -13.42224 -13.30081 -13.02981 -12.79235 -12.51993 -12.40437 -12.19542 -11.72875 -11.63020 -10.69155 -10.65125 -9.52889 -9.41515 -9.33944 -8.23192 -6.38244 0.10220 0.77554 1.14890 1.35375 1.39858 1.47095 1.82416 1.87862 2.34160 2.52777 3.06182 3.68047 3.93549 4.20691 4.27806 4.45119 4.51798 4.72992 4.73750 4.78203 4.97579 5.03142 5.22322 5.24027 5.41162 5.55252 5.63613 5.83966 6.05533 6.68887 6.78750 7.27583 7.48864 8.83672 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.031625 B = 0.006173 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.159254 B = 4534.602165 C = 4902.061668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.612 5.612 3 C 0.259 3.741 4 C -0.544 4.544 5 H 0.052 0.948 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.966 3.034 9 H -0.259 1.259 10 H -0.277 1.277 11 H -0.279 1.279 12 C 0.495 3.505 13 O -0.589 6.589 14 C -0.058 4.058 15 C -0.170 4.170 16 C -0.141 4.141 17 C -0.141 4.141 18 C -0.215 4.215 19 S 0.070 5.930 20 H 0.074 0.926 21 H 0.065 0.935 22 H 0.096 0.904 23 H 0.025 0.975 24 H -0.004 1.004 25 H 0.267 0.733 26 H 0.142 0.858 27 H 0.121 0.879 28 H 0.149 0.851 29 H 0.164 0.836 30 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.292 -16.596 1.493 18.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.343 5.343 3 C 0.138 3.862 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.790 3.210 9 H -0.183 1.183 10 H -0.202 1.202 11 H -0.205 1.205 12 C 0.283 3.717 13 O -0.470 6.470 14 C -0.099 4.099 15 C -0.288 4.288 16 C -0.171 4.171 17 C -0.171 4.171 18 C -0.350 4.350 19 S 0.334 5.666 20 H 0.092 0.908 21 H 0.084 0.916 22 H 0.114 0.886 23 H 0.043 0.957 24 H 0.014 0.986 25 H 0.076 0.924 26 H 0.159 0.841 27 H 0.139 0.861 28 H 0.167 0.833 29 H 0.182 0.818 30 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -6.786 -16.214 -0.020 17.576 hybrid contribution 0.766 0.623 0.761 1.246 sum -6.020 -15.591 0.741 16.729 Atomic orbital electron populations 1.21985 0.77671 1.04138 1.02847 1.48191 1.08514 1.06200 1.71416 1.18743 0.91079 0.80453 0.95952 1.21681 1.36925 1.06547 0.93076 0.92942 1.25863 0.94870 0.96436 1.01995 1.70042 1.38872 1.14840 1.33104 0.85488 0.78922 0.77363 0.79181 1.18291 1.20208 1.20479 1.21207 0.87917 0.86263 0.76326 1.90656 1.16544 1.87990 1.51800 1.20252 0.96045 0.86174 1.07444 1.24055 1.05816 1.02577 0.96322 1.20387 0.99301 0.97880 0.99547 1.20420 1.00211 0.99277 0.97181 1.25902 1.07014 1.05480 0.96602 1.84277 1.42066 1.29416 1.10869 0.90767 0.91598 0.88594 0.95726 0.98604 0.92371 0.84054 0.86117 0.83330 0.81819 0.79485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.17 10.24 127.77 1.31 3.48 16 2 N -0.61 -26.01 2.86 -851.14 -2.43 -28.45 16 3 C 0.26 14.23 5.16 85.63 0.44 14.67 16 4 C -0.54 -31.90 9.39 25.60 0.24 -31.66 16 5 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 6 C 0.01 0.43 5.46 84.65 0.46 0.89 16 7 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 8 Si 0.97 45.51 29.54 68.60 2.03 47.54 16 9 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 12 C 0.49 20.75 7.67 87.65 0.67 21.42 16 13 O -0.59 -31.38 15.61 -3.01 -0.05 -31.43 16 14 C -0.06 -1.62 4.75 29.10 0.14 -1.48 16 15 C -0.17 -5.06 5.00 24.59 0.12 -4.94 16 16 C -0.14 -3.80 10.05 21.22 0.21 -3.59 16 17 C -0.14 -3.32 10.18 21.22 0.22 -3.11 16 18 C -0.21 -5.08 11.23 66.72 0.75 -4.33 16 19 S 0.07 2.01 23.33 -56.49 -1.32 0.69 16 20 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 21 H 0.07 2.02 8.07 -2.39 -0.02 2.00 16 22 H 0.10 2.01 6.44 -2.39 -0.02 1.99 16 23 H 0.02 1.36 8.07 -2.39 -0.02 1.34 16 24 H 0.00 -0.27 7.43 -2.38 -0.02 -0.28 16 25 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 26 H 0.14 2.87 8.11 -2.38 -0.02 2.85 16 27 H 0.12 2.81 7.40 -2.39 -0.02 2.79 16 28 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 29 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 30 H 0.19 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -76.71 279.02 4.21 -72.51 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: 1.13 Total: 4.54 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 4.56 Total: -8.65 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -2.15 Total: -85.19 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -0.05 Total: -31.43 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -1.32 Total: 0.69 kcal Total: -76.71 4.21 -72.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833754.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.384 kcal (2) G-P(sol) polarization free energy of solvation -76.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds