Wall clock time and date at job start Sun Mar 29 2020 22:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86801 * 120.00167 * 2 1 4 4 H 1.48504 * 109.47030 * 270.00292 * 3 2 1 5 5 H 1.48498 * 109.46996 * 29.99817 * 3 2 1 6 6 H 1.48500 * 109.47635 * 149.99961 * 3 2 1 7 7 C 1.38666 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99870 * 0.02562 * 7 2 1 9 9 S 1.76206 * 120.00222 * 179.97438 * 7 2 1 10 10 C 1.76196 * 99.99876 * 180.02562 * 9 7 2 11 11 N 1.31581 * 126.59306 * 359.97295 * 10 9 7 12 12 N 1.28708 * 109.82760 * 179.65945 * 11 10 9 13 13 C 1.30214 * 109.92953 * 359.70953 * 12 11 10 14 14 N 1.36182 * 126.57025 * 180.02562 * 10 9 7 15 15 C 1.46270 * 127.50603 * 1.24848 * 14 10 9 16 16 C 1.53145 * 109.35639 * 207.59517 * 15 14 10 17 17 C 1.52766 * 109.69501 * 270.76531 * 16 15 14 18 18 C 1.52542 * 110.63783 * 61.53675 * 17 16 15 19 19 C 1.50701 * 127.28239 * 180.97335 * 13 12 11 20 20 H 0.96999 * 119.99736 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.49664 * 87.62026 * 15 14 10 22 22 H 1.08996 * 109.49034 * 327.56464 * 15 14 10 23 23 H 1.09003 * 109.43489 * 30.83286 * 16 15 14 24 24 H 1.08998 * 109.43536 * 150.69655 * 16 15 14 25 25 H 1.09001 * 109.24603 * 181.83347 * 17 16 15 26 26 H 1.09002 * 109.24338 * 301.24059 * 17 16 15 27 27 H 1.08996 * 109.44522 * 153.54610 * 18 17 16 28 28 H 1.08999 * 109.44376 * 273.45345 * 18 17 16 29 29 H 1.09001 * 109.53586 * 106.90081 * 19 13 12 30 30 H 1.08999 * 109.61153 * 346.68932 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5480 1.4402 0.7000 7 6 2.0097 -1.2009 0.0005 8 1 1.4697 -2.1362 0.0005 9 16 3.7718 -1.2009 -0.0001 10 6 4.0777 -2.9361 0.0001 11 7 3.1735 -3.8920 0.0012 12 7 3.7530 -5.0412 -0.0062 13 6 5.0459 -4.8862 -0.0185 14 7 5.2957 -3.5453 0.0003 15 6 6.6111 -2.9061 0.0255 16 6 7.6340 -3.8229 -0.6516 17 6 8.2428 -4.7677 0.3829 18 6 7.1666 -5.6561 0.9988 19 6 6.0947 -5.9679 -0.0506 20 1 -0.4850 0.8401 -0.0004 21 1 6.9095 -2.7286 1.0588 22 1 6.5644 -1.9567 -0.5078 23 1 7.1399 -4.4059 -1.4289 24 1 8.4228 -3.2181 -1.0990 25 1 8.9927 -5.3943 -0.1001 26 1 8.7180 -4.1813 1.1694 27 1 7.6178 -6.5863 1.3442 28 1 6.7092 -5.1399 1.8428 29 1 6.5512 -6.0036 -1.0397 30 1 5.6346 -6.9303 0.1735 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019847644.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:51 Heat of formation + Delta-G solvation = 62.304005 kcal Electronic energy + Delta-G solvation = -14892.458261 eV Core-core repulsion = 12428.744051 eV Total energy + Delta-G solvation = -2463.714210 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.30043 -37.60584 -33.80739 -32.57911 -31.38743 -29.36366 -26.25238 -25.68495 -24.55781 -22.03359 -20.18868 -20.05390 -18.10876 -16.47217 -16.21066 -15.30847 -15.11660 -15.06199 -14.65390 -14.04035 -13.23943 -12.99536 -12.86230 -12.11514 -12.01290 -11.66641 -11.29528 -11.24129 -11.15820 -10.99814 -10.75894 -10.68873 -10.04430 -9.76566 -9.69432 -9.39993 -8.96019 -8.84505 -7.03749 -6.37862 -4.17787 2.24818 2.35049 3.10102 3.14968 3.20762 3.37604 3.57120 4.10935 4.40206 4.41600 4.53631 4.58329 4.66244 4.99696 5.01191 5.11644 5.16709 5.37414 5.51558 5.59261 5.65129 5.70594 5.83384 5.97622 6.12012 6.17435 6.41291 6.73249 7.37808 7.87820 8.67818 9.00730 9.46715 10.71436 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.044429 B = 0.007138 C = 0.006300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.068759 B = 3921.543632 C = 4443.310369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.100 3.900 3 Si 0.844 3.156 4 H -0.263 1.263 5 H -0.265 1.265 6 H -0.240 1.240 7 C -0.522 4.522 8 H 0.121 0.879 9 S 0.044 5.956 10 C 0.186 3.814 11 N -0.294 5.294 12 N -0.292 5.292 13 C 0.149 3.851 14 N -0.473 5.473 15 C 0.110 3.890 16 C -0.138 4.138 17 C -0.121 4.121 18 C -0.123 4.123 19 C -0.026 4.026 20 H 0.274 0.726 21 H 0.083 0.917 22 H 0.094 0.906 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.769 -5.632 0.151 19.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.110 4.110 3 Si 0.668 3.332 4 H -0.188 1.188 5 H -0.190 1.190 6 H -0.164 1.164 7 C -0.670 4.670 8 H 0.138 0.862 9 S 0.274 5.726 10 C -0.187 4.187 11 N -0.138 5.138 12 N -0.132 5.132 13 C -0.121 4.121 14 N -0.170 5.170 15 C -0.014 4.014 16 C -0.176 4.176 17 C -0.159 4.159 18 C -0.162 4.162 19 C -0.065 4.065 20 H 0.084 0.916 21 H 0.101 0.899 22 H 0.112 0.888 23 H 0.099 0.901 24 H 0.102 0.898 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 17.940 -5.246 0.162 18.692 hybrid contribution 0.511 0.542 0.014 0.745 sum 18.450 -4.705 0.176 19.042 Atomic orbital electron populations 1.69917 1.05626 1.27776 1.46527 1.24668 0.94583 0.98318 0.93479 0.86984 0.81684 0.84441 0.80072 1.18778 1.18989 1.16446 1.22502 0.86174 0.99403 1.58901 0.86164 1.82675 1.13159 0.87505 1.89274 1.27329 0.82639 1.03552 1.05143 1.74939 1.24112 0.93101 1.21622 1.73936 1.02795 1.18988 1.17528 1.24584 0.95093 0.83883 1.08580 1.46219 1.06781 1.06215 1.57792 1.21849 0.79877 0.97056 1.02604 1.21996 0.98229 0.98304 0.99076 1.21568 0.97979 0.97891 0.98456 1.21613 0.95834 1.00359 0.98376 1.20040 0.91738 0.94526 1.00245 0.91564 0.89855 0.88766 0.90093 0.89751 0.91268 0.91459 0.90642 0.91573 0.89728 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.79 13.97 55.48 0.78 -25.02 16 2 C 0.10 2.84 5.50 -17.48 -0.10 2.74 16 3 Si 0.84 19.75 27.73 -169.99 -4.71 15.04 16 4 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.24 -5.29 6.74 56.52 0.38 -4.91 16 7 C -0.52 -15.21 9.92 30.89 0.31 -14.90 16 8 H 0.12 3.94 7.17 -52.48 -0.38 3.57 16 9 S 0.04 1.05 19.44 -107.50 -2.09 -1.04 16 10 C 0.19 4.35 8.06 -88.42 -0.71 3.63 16 11 N -0.29 -7.70 11.07 30.66 0.34 -7.36 16 12 N -0.29 -6.74 12.19 32.92 0.40 -6.34 16 13 C 0.15 2.70 6.95 -154.39 -1.07 1.63 16 14 N -0.47 -8.68 3.11 -113.77 -0.35 -9.03 16 15 C 0.11 1.42 6.31 -4.09 -0.03 1.40 16 16 C -0.14 -1.30 5.55 -26.78 -0.15 -1.45 16 17 C -0.12 -0.95 5.66 -27.09 -0.15 -1.10 16 18 C -0.12 -1.18 5.68 -26.85 -0.15 -1.33 16 19 C -0.03 -0.31 5.56 -27.77 -0.15 -0.47 16 20 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 21 H 0.08 0.98 7.82 -51.93 -0.41 0.57 16 22 H 0.09 1.20 7.94 -51.93 -0.41 0.79 16 23 H 0.08 0.85 5.70 -51.93 -0.30 0.56 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.77 7.84 -51.93 -0.41 0.36 16 29 H 0.08 0.87 6.35 -51.93 -0.33 0.54 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 259.42 15.07 3.91 3.91 Total: -1.00 -33.86 259.42 -7.44 -41.29 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -3.49 Total: -1.60 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -2.21 Total: -9.85 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 1.16 Total: -47.75 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.71 Total: 15.04 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.09 Total: -1.04 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -33.86 -7.44 -41.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019847644.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.597 kcal (2) G-P(sol) polarization free energy of solvation -33.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds