Wall clock time and date at job start Sun Mar 29 2020 22:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86801 * 120.00167 * 2 1 4 4 H 1.48504 * 109.47030 * 270.00292 * 3 2 1 5 5 H 1.48498 * 109.46996 * 29.99817 * 3 2 1 6 6 H 1.48500 * 109.47635 * 149.99961 * 3 2 1 7 7 C 1.38666 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99870 * 0.02562 * 7 2 1 9 9 S 1.76206 * 120.00222 * 179.97438 * 7 2 1 10 10 C 1.76196 * 99.99876 * 180.02562 * 9 7 2 11 11 N 1.31581 * 126.59306 * 359.97295 * 10 9 7 12 12 N 1.28708 * 109.82760 * 179.65945 * 11 10 9 13 13 C 1.30214 * 109.92953 * 359.70953 * 12 11 10 14 14 N 1.36182 * 126.57025 * 180.02562 * 10 9 7 15 15 C 1.46270 * 127.50603 * 1.24848 * 14 10 9 16 16 C 1.53145 * 109.35639 * 207.59517 * 15 14 10 17 17 C 1.52766 * 109.69501 * 270.76531 * 16 15 14 18 18 C 1.52542 * 110.63783 * 61.53675 * 17 16 15 19 19 C 1.50701 * 127.28239 * 180.97335 * 13 12 11 20 20 H 0.96999 * 119.99736 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.49664 * 87.62026 * 15 14 10 22 22 H 1.08996 * 109.49034 * 327.56464 * 15 14 10 23 23 H 1.09003 * 109.43489 * 30.83286 * 16 15 14 24 24 H 1.08998 * 109.43536 * 150.69655 * 16 15 14 25 25 H 1.09001 * 109.24603 * 181.83347 * 17 16 15 26 26 H 1.09002 * 109.24338 * 301.24059 * 17 16 15 27 27 H 1.08996 * 109.44522 * 153.54610 * 18 17 16 28 28 H 1.08999 * 109.44376 * 273.45345 * 18 17 16 29 29 H 1.09001 * 109.53586 * 106.90081 * 19 13 12 30 30 H 1.08999 * 109.61153 * 346.68932 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5480 1.4402 0.7000 7 6 2.0097 -1.2009 0.0005 8 1 1.4697 -2.1362 0.0005 9 16 3.7718 -1.2009 -0.0001 10 6 4.0777 -2.9361 0.0001 11 7 3.1735 -3.8920 0.0012 12 7 3.7530 -5.0412 -0.0062 13 6 5.0459 -4.8862 -0.0185 14 7 5.2957 -3.5453 0.0003 15 6 6.6111 -2.9061 0.0255 16 6 7.6340 -3.8229 -0.6516 17 6 8.2428 -4.7677 0.3829 18 6 7.1666 -5.6561 0.9988 19 6 6.0947 -5.9679 -0.0506 20 1 -0.4850 0.8401 -0.0004 21 1 6.9095 -2.7286 1.0588 22 1 6.5644 -1.9567 -0.5078 23 1 7.1399 -4.4059 -1.4289 24 1 8.4228 -3.2181 -1.0990 25 1 8.9927 -5.3943 -0.1001 26 1 8.7180 -4.1813 1.1694 27 1 7.6178 -6.5863 1.3442 28 1 6.7092 -5.1399 1.8428 29 1 6.5512 -6.0036 -1.0397 30 1 5.6346 -6.9303 0.1735 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019847644.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:50 Heat of formation + Delta-G solvation = 39.395663 kcal Electronic energy + Delta-G solvation = -14893.451641 eV Core-core repulsion = 12428.744051 eV Total energy + Delta-G solvation = -2464.707590 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.89240 -38.61217 -35.09427 -34.74633 -32.61449 -30.73494 -28.05607 -27.13447 -25.66733 -23.69974 -21.57325 -20.86180 -19.98645 -18.09885 -17.55375 -17.17332 -16.75175 -16.02133 -15.77950 -15.18621 -14.95940 -14.22532 -13.82411 -13.78702 -13.24091 -13.10467 -12.94809 -12.84761 -12.34166 -12.12428 -11.93191 -11.86175 -11.55323 -11.41240 -11.31882 -11.02006 -10.91754 -10.64154 -8.95687 -8.54485 -6.36721 0.47639 0.77964 1.29677 1.34084 1.43447 1.82523 1.86258 2.15890 2.37200 2.82348 3.37257 3.56212 3.71574 3.86882 4.16812 4.21364 4.25903 4.39993 4.60299 4.71631 4.83068 4.86370 4.94205 5.09138 5.14635 5.23029 5.34835 5.40118 5.71609 6.00317 6.30132 6.80957 7.77711 8.60004 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.044429 B = 0.007138 C = 0.006300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.068759 B = 3921.543632 C = 4443.310369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.043 3.957 3 Si 0.917 3.083 4 H -0.250 1.250 5 H -0.252 1.252 6 H -0.216 1.216 7 C -0.555 4.555 8 H 0.063 0.937 9 S 0.089 5.911 10 C 0.158 3.842 11 N -0.351 5.351 12 N -0.347 5.347 13 C 0.179 3.821 14 N -0.462 5.462 15 C 0.092 3.908 16 C -0.132 4.132 17 C -0.116 4.116 18 C -0.119 4.119 19 C -0.028 4.028 20 H 0.281 0.719 21 H 0.099 0.901 22 H 0.097 0.903 23 H 0.070 0.930 24 H 0.116 0.884 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.041 0.959 29 H 0.113 0.887 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.291 -5.141 0.077 23.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.163 4.163 3 Si 0.735 3.265 4 H -0.174 1.174 5 H -0.176 1.176 6 H -0.139 1.139 7 C -0.704 4.704 8 H 0.081 0.919 9 S 0.318 5.682 10 C -0.217 4.217 11 N -0.195 5.195 12 N -0.186 5.186 13 C -0.093 4.093 14 N -0.158 5.158 15 C -0.029 4.029 16 C -0.169 4.169 17 C -0.154 4.154 18 C -0.157 4.157 19 C -0.067 4.067 20 H 0.091 0.909 21 H 0.117 0.883 22 H 0.115 0.885 23 H 0.089 0.911 24 H 0.134 0.866 25 H 0.116 0.884 26 H 0.099 0.901 27 H 0.123 0.877 28 H 0.060 0.940 29 H 0.131 0.869 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 22.497 -4.789 0.091 23.002 hybrid contribution -0.838 0.169 0.035 0.856 sum 21.659 -4.621 0.126 22.147 Atomic orbital electron populations 1.70053 1.07959 1.29528 1.47428 1.25798 0.95590 1.02708 0.92180 0.85901 0.81077 0.78337 0.81153 1.17369 1.17578 1.13888 1.22559 0.90008 0.97859 1.59940 0.91869 1.81814 1.07863 0.88181 1.90346 1.27266 0.84540 1.03218 1.06694 1.74814 1.26810 0.94739 1.23125 1.73825 1.05456 1.18352 1.20983 1.25781 0.94911 0.85131 1.03453 1.46571 1.07182 1.06098 1.55944 1.22454 0.78053 0.98056 1.04339 1.22049 0.97656 0.98243 0.98968 1.21591 0.97623 0.97692 0.98458 1.21635 0.95356 1.02106 0.96622 1.20463 0.90900 0.92427 1.02931 0.90897 0.88253 0.88494 0.91114 0.86588 0.88370 0.90116 0.87654 0.93989 0.86905 0.88119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.90 13.97 21.62 0.30 -56.60 16 2 C 0.04 2.54 5.50 84.82 0.47 3.01 16 3 Si 0.92 40.54 27.73 68.60 1.90 42.44 16 4 H -0.25 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.25 -10.54 7.11 99.48 0.71 -9.84 16 6 H -0.22 -8.62 6.74 99.48 0.67 -7.95 16 7 C -0.56 -34.05 9.92 67.92 0.67 -33.38 16 8 H 0.06 4.50 7.17 -2.91 -0.02 4.48 16 9 S 0.09 4.28 19.44 -56.49 -1.10 3.18 16 10 C 0.16 7.59 8.06 179.58 1.45 9.04 16 11 N -0.35 -19.49 11.07 -56.91 -0.63 -20.12 16 12 N -0.35 -16.61 12.19 -49.77 -0.61 -17.22 16 13 C 0.18 6.39 6.95 137.77 0.96 7.35 16 14 N -0.46 -16.62 3.11 -513.85 -1.60 -18.22 16 15 C 0.09 2.12 6.31 86.47 0.55 2.67 16 16 C -0.13 -1.86 5.55 30.56 0.17 -1.69 16 17 C -0.12 -1.19 5.66 30.36 0.17 -1.02 16 18 C -0.12 -1.79 5.68 30.51 0.17 -1.62 16 19 C -0.03 -0.59 5.56 29.92 0.17 -0.43 16 20 H 0.28 15.87 8.31 -92.71 -0.77 15.09 16 21 H 0.10 2.01 7.82 -2.39 -0.02 2.00 16 22 H 0.10 2.20 7.94 -2.39 -0.02 2.18 16 23 H 0.07 1.19 5.70 -2.39 -0.01 1.17 16 24 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.10 0.55 8.14 -2.39 -0.02 0.54 16 26 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 27 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.04 0.85 7.84 -2.39 -0.02 0.83 16 29 H 0.11 1.87 6.35 -2.39 -0.02 1.85 16 30 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -81.47 259.42 4.15 -77.32 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: 1.11 Total: 5.28 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: 4.77 Total: -16.07 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -2.53 Total: -112.15 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 1.90 Total: 42.44 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -1.10 Total: 3.18 kcal Total: -81.47 4.15 -77.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019847644.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.713 kcal (2) G-P(sol) polarization free energy of solvation -81.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds