Wall clock time and date at job start Sun Mar 29 2020 22:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00228 * 2 1 4 4 H 1.48505 * 109.46953 * 269.99628 * 3 2 1 5 5 H 1.48500 * 109.47181 * 29.99646 * 3 2 1 6 6 H 1.48500 * 109.47183 * 149.99829 * 3 2 1 7 7 C 1.37878 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00119 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00275 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47300 * 180.02562 * 9 7 2 11 11 N 1.46894 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.46909 * 110.99655 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46961 * 179.97438 * 12 11 10 14 14 C 1.38237 * 120.00455 * 104.99910 * 13 12 11 15 15 C 1.38224 * 120.01313 * 179.74163 * 14 13 12 16 16 C 1.38264 * 120.02445 * 0.26351 * 15 14 13 17 17 C 1.38190 * 120.01695 * 0.02562 * 16 15 14 18 18 C 1.38328 * 120.01174 * 285.27645 * 13 12 11 19 19 Cl 1.73603 * 120.01189 * 0.02562 * 18 13 12 20 20 H 0.97004 * 119.99534 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.46748 * 60.00223 * 9 7 2 22 22 H 1.09003 * 109.46944 * 300.00573 * 9 7 2 23 23 H 1.08996 * 109.46821 * 60.00366 * 10 9 7 24 24 H 1.08999 * 109.46762 * 300.00371 * 10 9 7 25 25 H 1.00898 * 111.00550 * 56.04592 * 11 10 9 26 26 H 1.08993 * 109.47031 * 60.00225 * 12 11 10 27 27 H 1.08991 * 109.47270 * 299.99716 * 12 11 10 28 28 H 1.08002 * 119.99593 * 0.02780 * 14 13 12 29 29 H 1.07996 * 119.98813 * 180.23496 * 15 14 13 30 30 H 1.08004 * 119.98845 * 179.97438 * 16 15 14 31 31 H 1.08000 * 120.00844 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0027 11 7 1.5106 -4.9342 0.0033 12 6 2.4351 -6.0759 0.0037 13 6 1.6470 -7.3604 0.0048 14 6 1.5491 -8.1124 -1.1510 15 6 0.8307 -9.2933 -1.1487 16 6 0.2051 -9.7203 0.0080 17 6 0.2973 -8.9664 1.1625 18 6 1.0166 -7.7843 1.1608 19 17 1.1325 -6.8365 2.6107 20 1 -0.4850 0.8401 -0.0004 21 1 0.6240 -2.5575 -0.8881 22 1 0.6245 -2.5563 0.8919 23 1 2.8717 -3.6036 0.8927 24 1 2.8718 -3.6051 -0.8873 25 1 0.8744 -4.9848 -0.7782 26 1 3.0630 -6.0346 0.8936 27 1 3.0629 -6.0353 -0.8863 28 1 2.0378 -7.7796 -2.0547 29 1 0.7576 -9.8824 -2.0509 30 1 -0.3564 -10.6429 0.0090 31 1 -0.1911 -9.3003 2.0660 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020045602.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:26 Heat of formation + Delta-G solvation = 4.189692 kcal Electronic energy + Delta-G solvation = -14057.608578 eV Core-core repulsion = 11557.037885 eV Total energy + Delta-G solvation = -2500.570693 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.44792 -36.17690 -35.92499 -33.16217 -31.57569 -30.72882 -28.87590 -25.44460 -23.35627 -22.71551 -21.20166 -20.48484 -17.06264 -16.28169 -15.90171 -15.47398 -14.65109 -14.36910 -14.23790 -13.88370 -13.46754 -13.03619 -12.45275 -12.27496 -12.07901 -11.47051 -11.35524 -11.29311 -10.99142 -10.92028 -10.54754 -10.44482 -9.96705 -9.41211 -9.15642 -8.94939 -8.61601 -8.32609 -7.77851 -5.97029 -3.99539 1.13919 1.19477 2.36854 3.33653 3.39833 3.43313 3.56571 4.46153 4.65170 4.72568 4.84660 5.06568 5.18479 5.34500 5.38961 5.54275 5.64331 5.77841 5.96347 6.16023 6.30128 6.33443 6.37768 6.48215 6.73322 7.01001 7.48478 7.75467 7.85209 7.98031 8.12017 8.46375 9.07840 9.64050 11.14413 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.042063 B = 0.004623 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.508005 B = 6055.181198 C = 6328.501308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.068 3.932 11 N -0.679 5.679 12 C 0.094 3.906 13 C -0.071 4.071 14 C -0.105 4.105 15 C -0.121 4.121 16 C -0.114 4.114 17 C -0.118 4.118 18 C -0.012 4.012 19 Cl -0.052 7.052 20 H 0.260 0.740 21 H 0.013 0.987 22 H 0.026 0.974 23 H 0.059 0.941 24 H 0.015 0.985 25 H 0.336 0.664 26 H 0.082 0.918 27 H 0.034 0.966 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.970 -19.566 -0.343 19.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.060 4.060 11 N -0.310 5.310 12 C -0.035 4.035 13 C -0.072 4.072 14 C -0.124 4.124 15 C -0.139 4.139 16 C -0.132 4.132 17 C -0.136 4.136 18 C -0.039 4.039 19 Cl -0.022 7.022 20 H 0.070 0.930 21 H 0.031 0.969 22 H 0.044 0.956 23 H 0.077 0.923 24 H 0.033 0.967 25 H 0.153 0.847 26 H 0.100 0.900 27 H 0.052 0.948 28 H 0.146 0.854 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.762 -19.341 0.489 19.427 hybrid contribution 0.713 1.029 -0.841 1.508 sum 2.475 -18.312 -0.352 18.482 Atomic orbital electron populations 1.69978 1.06033 1.26541 1.50684 1.24997 0.94825 0.99178 0.95333 0.86596 0.79856 0.83516 0.78029 1.20729 1.21202 1.19886 1.21180 0.92965 0.91030 1.50824 0.92785 1.19057 0.94007 0.90320 0.97750 1.22161 0.96978 0.88232 0.98622 1.60605 1.19276 1.01384 1.49714 1.20897 0.93753 0.87626 1.01235 1.19890 0.98312 0.96968 0.92038 1.21085 0.99243 0.94789 0.97259 1.21172 0.97825 0.96618 0.98334 1.21064 0.99843 0.99827 0.92483 1.21074 0.99418 0.93793 0.99346 1.20846 1.00348 0.93560 0.89170 1.98397 1.96762 1.71892 1.35195 0.93019 0.96856 0.95575 0.92267 0.96706 0.84657 0.90007 0.94774 0.85421 0.85707 0.85490 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.28 13.29 55.43 0.74 -26.55 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.03 0.69 5.23 -27.88 -0.15 0.55 16 10 C 0.07 1.45 5.62 -3.83 -0.02 1.43 16 11 N -0.68 -12.36 6.37 -115.06 -0.73 -13.09 16 12 C 0.09 1.41 5.14 -4.97 -0.03 1.39 16 13 C -0.07 -0.96 5.40 -104.59 -0.56 -1.52 16 14 C -0.10 -1.19 9.67 -39.59 -0.38 -1.58 16 15 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 16 C -0.11 -1.10 10.05 -39.59 -0.40 -1.50 16 17 C -0.12 -1.33 9.83 -39.55 -0.39 -1.72 16 18 C -0.01 -0.16 6.31 -39.50 -0.25 -0.41 16 19 Cl -0.05 -0.77 27.55 -51.86 -1.43 -2.20 16 20 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 21 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 22 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 24 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.34 6.00 8.72 -39.29 -0.34 5.66 16 26 H 0.08 1.26 7.60 -51.93 -0.39 0.87 16 27 H 0.03 0.48 7.95 -51.93 -0.41 0.06 16 28 H 0.13 1.25 8.00 -52.49 -0.42 0.83 16 29 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 31 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 285.00 15.07 4.29 4.29 Total: -1.00 -30.81 285.00 -9.21 -40.01 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -4.07 Total: -0.67 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -2.98 Total: -18.68 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.00 Total: -39.64 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.43 Total: -2.20 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.81 -9.21 -40.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020045602.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.202 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds