Wall clock time and date at job start Sun Mar 29 2020 22:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00228 * 2 1 4 4 H 1.48505 * 109.46953 * 269.99628 * 3 2 1 5 5 H 1.48500 * 109.47181 * 29.99646 * 3 2 1 6 6 H 1.48500 * 109.47183 * 149.99829 * 3 2 1 7 7 C 1.37878 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00119 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00275 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47300 * 180.02562 * 9 7 2 11 11 N 1.46894 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.46909 * 110.99655 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46961 * 179.97438 * 12 11 10 14 14 C 1.38237 * 120.00455 * 104.99910 * 13 12 11 15 15 C 1.38224 * 120.01313 * 179.74163 * 14 13 12 16 16 C 1.38264 * 120.02445 * 0.26351 * 15 14 13 17 17 C 1.38190 * 120.01695 * 0.02562 * 16 15 14 18 18 C 1.38328 * 120.01174 * 285.27645 * 13 12 11 19 19 Cl 1.73603 * 120.01189 * 0.02562 * 18 13 12 20 20 H 0.97004 * 119.99534 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.46748 * 60.00223 * 9 7 2 22 22 H 1.09003 * 109.46944 * 300.00573 * 9 7 2 23 23 H 1.08996 * 109.46821 * 60.00366 * 10 9 7 24 24 H 1.08999 * 109.46762 * 300.00371 * 10 9 7 25 25 H 1.00898 * 111.00550 * 56.04592 * 11 10 9 26 26 H 1.08993 * 109.47031 * 60.00225 * 12 11 10 27 27 H 1.08991 * 109.47270 * 299.99716 * 12 11 10 28 28 H 1.08002 * 119.99593 * 0.02780 * 14 13 12 29 29 H 1.07996 * 119.98813 * 180.23496 * 15 14 13 30 30 H 1.08004 * 119.98845 * 179.97438 * 16 15 14 31 31 H 1.08000 * 120.00844 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0027 11 7 1.5106 -4.9342 0.0033 12 6 2.4351 -6.0759 0.0037 13 6 1.6470 -7.3604 0.0048 14 6 1.5491 -8.1124 -1.1510 15 6 0.8307 -9.2933 -1.1487 16 6 0.2051 -9.7203 0.0080 17 6 0.2973 -8.9664 1.1625 18 6 1.0166 -7.7843 1.1608 19 17 1.1325 -6.8365 2.6107 20 1 -0.4850 0.8401 -0.0004 21 1 0.6240 -2.5575 -0.8881 22 1 0.6245 -2.5563 0.8919 23 1 2.8717 -3.6036 0.8927 24 1 2.8718 -3.6051 -0.8873 25 1 0.8744 -4.9848 -0.7782 26 1 3.0630 -6.0346 0.8936 27 1 3.0629 -6.0353 -0.8863 28 1 2.0378 -7.7796 -2.0547 29 1 0.7576 -9.8824 -2.0509 30 1 -0.3564 -10.6429 0.0090 31 1 -0.1911 -9.3003 2.0660 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020045602.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:26 Heat of formation + Delta-G solvation = -14.639725 kcal Electronic energy + Delta-G solvation = -14058.425083 eV Core-core repulsion = 11557.037885 eV Total energy + Delta-G solvation = -2501.387198 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.36095 -37.43599 -37.21873 -35.13863 -33.00316 -31.60813 -30.55984 -27.02517 -25.03659 -23.58006 -22.49198 -22.09934 -18.51368 -17.96287 -17.06002 -16.58774 -16.30065 -15.83644 -15.64190 -14.90756 -14.66272 -14.37918 -13.96749 -13.82239 -13.55853 -12.97660 -12.85151 -12.52400 -12.39665 -12.31931 -12.17398 -11.91746 -11.57881 -11.39271 -11.24438 -10.56173 -9.86978 -9.56949 -9.24606 -8.19896 -6.31551 0.24732 0.33522 1.36205 1.40231 1.42149 1.53299 2.40721 2.69026 3.13590 3.46757 3.77387 3.89352 4.16380 4.32542 4.46927 4.48511 4.55562 4.64387 4.69895 4.82769 5.02317 5.07533 5.34279 5.43901 5.47590 5.50756 5.67974 5.78355 5.92346 6.13117 6.26724 6.52592 6.85870 7.37772 8.92368 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.042063 B = 0.004623 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.508005 B = 6055.181198 C = 6328.501308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.034 3.966 10 C 0.088 3.912 11 N -0.685 5.685 12 C 0.099 3.901 13 C -0.092 4.092 14 C -0.109 4.109 15 C -0.116 4.116 16 C -0.106 4.106 17 C -0.125 4.125 18 C -0.033 4.033 19 Cl -0.077 7.077 20 H 0.264 0.736 21 H -0.009 1.009 22 H -0.009 1.009 23 H 0.055 0.945 24 H 0.022 0.978 25 H 0.338 0.662 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.143 0.857 29 H 0.157 0.843 30 H 0.161 0.839 31 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.654 -20.787 -1.399 21.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.004 4.004 10 C -0.041 4.041 11 N -0.316 5.316 12 C -0.029 4.029 13 C -0.093 4.093 14 C -0.127 4.127 15 C -0.134 4.134 16 C -0.124 4.124 17 C -0.144 4.144 18 C -0.060 4.060 19 Cl -0.048 7.048 20 H 0.072 0.928 21 H 0.010 0.990 22 H 0.010 0.990 23 H 0.073 0.927 24 H 0.041 0.959 25 H 0.155 0.845 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.161 0.839 29 H 0.175 0.825 30 H 0.178 0.822 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.457 -20.587 -0.570 20.741 hybrid contribution 0.442 1.275 -0.552 1.458 sum 2.898 -19.312 -1.122 19.560 Atomic orbital electron populations 1.70117 1.07880 1.27778 1.51461 1.25979 0.95745 1.03389 0.94597 0.85415 0.78603 0.78261 0.78555 1.19575 1.20764 1.18757 1.21618 0.93540 0.92239 1.50900 0.92113 1.18894 0.94266 0.92277 0.94930 1.21749 0.95521 0.88103 0.98720 1.60471 1.19907 1.01173 1.50029 1.20843 0.93456 0.87189 1.01427 1.19826 0.99528 0.96851 0.93131 1.21332 0.99371 0.95171 0.96865 1.21584 0.96294 0.95947 0.99581 1.21498 0.98978 1.00397 0.91549 1.21338 0.99063 0.93170 1.00800 1.21069 1.01980 0.94519 0.88468 1.98382 1.96979 1.72742 1.36694 0.92763 0.99030 0.99037 0.92655 0.95949 0.84499 0.90857 0.93349 0.83924 0.82491 0.82176 0.83921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.00 13.29 21.45 0.28 -57.72 16 2 C 0.00 0.05 5.46 84.66 0.46 0.51 16 3 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 7 C -0.54 -31.73 9.11 25.60 0.23 -31.50 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.03 1.85 5.23 29.85 0.16 2.01 16 10 C 0.09 3.79 5.62 86.30 0.49 4.28 16 11 N -0.69 -25.26 6.37 -517.95 -3.30 -28.56 16 12 C 0.10 2.95 5.14 85.55 0.44 3.39 16 13 C -0.09 -2.42 5.40 -19.84 -0.11 -2.52 16 14 C -0.11 -2.22 9.67 22.27 0.22 -2.00 16 15 C -0.12 -1.86 10.05 22.27 0.22 -1.64 16 16 C -0.11 -1.70 10.05 22.26 0.22 -1.48 16 17 C -0.13 -2.62 9.83 22.29 0.22 -2.40 16 18 C -0.03 -0.89 6.31 22.32 0.14 -0.75 16 19 Cl -0.08 -2.34 27.55 -2.72 -0.07 -2.42 16 20 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 21 H -0.01 -0.51 8.14 -2.39 -0.02 -0.52 16 22 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 23 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 24 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.34 12.21 8.72 -89.70 -0.78 11.43 16 26 H 0.07 2.28 7.60 -2.39 -0.02 2.26 16 27 H 0.05 1.29 7.95 -2.39 -0.02 1.27 16 28 H 0.14 2.41 8.00 -2.91 -0.02 2.38 16 29 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 30 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 31 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -67.27 285.00 1.96 -65.31 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 0.34 Total: 8.56 kcal Atomic # 6 Polarization: -34.79 SS G_CDS: 2.69 Total: -32.10 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -3.02 Total: -86.28 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 17 Polarization: -2.34 SS G_CDS: -0.07 Total: -2.42 kcal Total: -67.27 1.96 -65.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020045602.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.667 kcal (2) G-P(sol) polarization free energy of solvation -67.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds