Wall clock time and date at job start Sun Mar 29 2020 22:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47018 * 2 1 4 4 N 1.46901 * 109.47378 * 240.00309 * 2 1 3 5 5 C 1.46898 * 110.99822 * 84.99833 * 4 2 1 6 6 C 1.50701 * 109.46979 * 180.02562 * 5 4 2 7 7 H 1.08005 * 120.00032 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00294 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99811 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00316 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47172 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47206 * 120.00017 * 10 8 6 13 13 H 1.48504 * 109.47320 * 240.00272 * 10 8 6 14 14 C 1.50698 * 109.47173 * 120.00126 * 2 1 3 15 15 C 1.38236 * 120.00579 * 100.00046 * 14 2 1 16 16 C 1.38220 * 120.01151 * 179.97438 * 15 14 2 17 17 C 1.38265 * 120.02927 * 0.02562 * 16 15 14 18 18 C 1.38196 * 120.01248 * 359.97438 * 17 16 15 19 19 C 1.38334 * 120.00580 * 279.97863 * 14 2 1 20 20 Cl 1.73595 * 120.01372 * 0.04429 * 19 14 2 21 21 H 1.09001 * 109.47453 * 60.00294 * 1 2 3 22 22 H 1.09006 * 109.46940 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47597 * 299.99701 * 1 2 3 24 24 H 1.00901 * 110.99855 * 208.95110 * 4 2 1 25 25 H 1.08995 * 109.47224 * 299.99612 * 5 4 2 26 26 H 1.09004 * 109.47482 * 60.00456 * 5 4 2 27 27 H 0.97002 * 119.99753 * 179.97438 * 9 8 6 28 28 H 1.07991 * 119.99550 * 0.02562 * 15 14 2 29 29 H 1.07998 * 119.98921 * 180.02562 * 16 15 14 30 30 H 1.07999 * 119.99413 * 179.70049 * 17 16 15 31 31 H 1.08002 * 120.00655 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0824 0.2227 -2.3468 6 6 2.5874 -0.5216 -3.5560 7 1 2.8371 -1.5696 -3.4796 8 6 2.7305 0.1352 -4.7598 9 7 2.4269 1.4115 -4.8526 10 14 3.3571 -0.7872 -6.2584 11 1 3.6258 -2.2013 -5.8927 12 1 2.3327 -0.7404 -7.3326 13 1 4.6103 -0.1537 -6.7415 14 6 2.0323 -0.7104 1.2304 15 6 2.4587 -2.0226 1.1454 16 6 2.9200 -2.6742 2.2737 17 6 2.9547 -2.0142 3.4882 18 6 2.5286 -0.7024 3.5745 19 6 2.0672 -0.0494 2.4451 20 17 1.5313 1.5982 2.5528 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 2.9173 -1.1204 -1.0287 25 1 1.0871 0.6164 -2.5525 26 1 2.7588 1.0464 -2.1182 27 1 2.5280 1.8736 -5.6995 28 1 2.4322 -2.5385 0.1970 29 1 3.2534 -3.6992 2.2068 30 1 3.3107 -2.5254 4.3705 31 1 2.5554 -0.1871 4.5233 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199542.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:27 Heat of formation + Delta-G solvation = 10.482079 kcal Electronic energy + Delta-G solvation = -14494.466502 eV Core-core repulsion = 11994.168667 eV Total energy + Delta-G solvation = -2500.297835 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.51823 -36.32741 -35.99945 -32.92507 -30.89570 -30.65285 -28.74870 -26.16451 -23.42741 -22.71511 -21.42947 -19.86998 -17.31128 -16.27665 -15.62907 -15.23883 -14.65196 -14.33211 -13.97314 -13.70412 -13.41254 -12.71503 -12.34218 -12.13816 -11.67465 -11.52516 -11.38615 -11.32747 -11.27725 -10.89115 -10.75644 -10.54288 -10.24110 -9.86797 -9.18031 -8.80307 -8.56330 -8.47349 -7.35926 -6.03272 -4.05259 1.22402 1.35211 2.25419 3.31004 3.38242 3.42933 3.70752 4.42223 4.77095 4.86026 5.04244 5.17678 5.32922 5.37753 5.52065 5.67641 5.84569 5.93986 6.06503 6.19618 6.29259 6.42187 6.50753 6.61999 6.73382 6.89676 7.26582 7.41155 7.77909 8.12099 8.35814 8.57634 9.03817 9.59611 11.07920 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.033178 B = 0.005837 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.741263 B = 4796.087160 C = 5351.300419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.116 3.884 3 H 0.053 0.947 4 N -0.683 5.683 5 C 0.194 3.806 6 C -0.513 4.513 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.899 3.101 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.285 1.285 14 C -0.065 4.065 15 C -0.096 4.096 16 C -0.117 4.117 17 C -0.120 4.120 18 C -0.115 4.115 19 C -0.035 4.035 20 Cl -0.072 7.072 21 H 0.063 0.937 22 H 0.057 0.943 23 H 0.049 0.951 24 H 0.330 0.670 25 H 0.030 0.970 26 H -0.013 1.013 27 H 0.261 0.739 28 H 0.146 0.854 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.301 -4.543 16.344 16.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.006 3.994 3 H 0.071 0.929 4 N -0.316 5.316 5 C 0.067 3.933 6 C -0.552 4.552 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.537 5.537 10 Si 0.727 3.273 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.066 4.066 15 C -0.114 4.114 16 C -0.135 4.135 17 C -0.139 4.139 18 C -0.134 4.134 19 C -0.062 4.062 20 Cl -0.043 7.043 21 H 0.082 0.918 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.148 0.852 25 H 0.049 0.951 26 H 0.005 0.995 27 H 0.070 0.930 28 H 0.164 0.836 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.982 -4.481 16.038 16.681 hybrid contribution 1.065 0.371 -0.607 1.280 sum 0.083 -4.110 15.431 15.969 Atomic orbital electron populations 1.21700 0.93794 1.01959 1.01231 1.20474 0.96123 0.95631 0.87214 0.92899 1.60896 1.32390 1.34788 1.03478 1.19614 0.96689 0.90200 0.86786 1.21203 1.43281 0.96742 0.93967 0.91914 1.24990 0.95672 0.94897 0.99027 1.69977 1.48861 1.09004 1.25812 0.86434 0.78360 0.79936 0.82618 1.19664 1.21001 1.21113 1.20140 0.97676 0.94671 0.94093 1.21238 0.97025 0.93475 0.99677 1.21279 0.99339 1.00193 0.92670 1.21044 1.00625 0.94084 0.98115 1.20962 1.00031 0.95175 0.97206 1.20838 1.03672 0.86559 0.95136 1.98356 1.88717 1.18858 1.98337 0.91834 0.92402 0.93231 0.85247 0.95143 0.99503 0.92961 0.83606 0.85574 0.85585 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 9.35 37.15 0.35 -1.88 16 2 C 0.12 2.13 2.28 -68.87 -0.16 1.98 16 3 H 0.05 1.06 7.01 -51.93 -0.36 0.69 16 4 N -0.68 -14.54 5.60 -109.22 -0.61 -15.15 16 5 C 0.19 5.08 5.24 -4.98 -0.03 5.05 16 6 C -0.51 -14.49 9.32 -34.44 -0.32 -14.81 16 7 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 10 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 C -0.06 -1.02 4.99 -104.59 -0.52 -1.54 16 15 C -0.10 -1.37 8.87 -39.59 -0.35 -1.72 16 16 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 17 C -0.12 -1.30 10.05 -39.59 -0.40 -1.70 16 18 C -0.11 -1.38 9.83 -39.55 -0.39 -1.77 16 19 C -0.04 -0.50 6.31 -39.49 -0.25 -0.75 16 20 Cl -0.07 -1.01 26.63 -51.86 -1.38 -2.39 16 21 H 0.06 1.18 7.45 -51.93 -0.39 0.80 16 22 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.05 0.76 7.26 -51.93 -0.38 0.39 16 24 H 0.33 6.70 6.97 -39.29 -0.27 6.42 16 25 H 0.03 0.86 7.44 -51.93 -0.39 0.47 16 26 H -0.01 -0.36 8.06 -51.93 -0.42 -0.78 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.15 2.14 6.70 -52.49 -0.35 1.78 16 29 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 30 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 277.43 15.07 4.18 4.18 Total: -1.00 -29.83 277.43 -8.45 -38.28 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -3.79 Total: 2.02 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -2.56 Total: -17.42 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.13 Total: -41.31 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.38 Total: -2.39 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.83 -8.45 -38.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199542.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.764 kcal (2) G-P(sol) polarization free energy of solvation -29.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds