Wall clock time and date at job start Sun Mar 29 2020 21:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29362 * 1 3 3 Si 1.86799 * 119.99727 * 2 1 4 4 H 1.48507 * 109.47007 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47411 * 300.00469 * 3 2 1 6 6 H 1.48506 * 109.47151 * 60.00707 * 3 2 1 7 7 C 1.46631 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00098 * 180.02562 * 7 2 1 9 9 O 1.22319 * 119.99819 * 359.97438 * 7 2 1 10 10 C 1.35714 * 116.99791 * 185.09417 * 9 7 2 11 11 C 1.38938 * 120.07444 * 354.37417 * 10 9 7 12 12 C 1.38063 * 119.92903 * 179.97438 * 11 10 9 13 13 C 1.38338 * 120.07469 * 359.72977 * 12 11 10 14 14 N 1.48009 * 119.93084 * 180.27099 * 13 12 11 15 15 O 1.31698 * 120.00369 * 0.27403 * 14 13 12 16 16 O 1.31703 * 120.00066 * 180.27412 * 14 13 12 17 17 C 1.38286 * 120.13843 * 0.54544 * 13 12 11 18 18 C 1.50698 * 119.96677 * 179.72532 * 17 13 12 19 19 O 1.42894 * 109.47798 * 179.72467 * 18 17 13 20 20 C 1.38110 * 120.07505 * 359.45469 * 17 13 12 21 21 H 0.96996 * 120.00628 * 359.97438 * 1 2 3 22 22 H 1.08005 * 120.03236 * 0.02562 * 11 10 9 23 23 H 1.07996 * 119.96592 * 180.02562 * 12 11 10 24 24 H 1.09005 * 109.46784 * 59.72370 * 18 17 13 25 25 H 1.09002 * 109.47331 * 299.73149 * 18 17 13 26 26 H 0.96699 * 114.00569 * 300.00620 * 19 18 17 27 27 H 1.07998 * 120.03954 * 180.25227 * 20 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2936 0.0000 0.0000 3 14 2.2275 1.6178 0.0000 4 1 3.6876 1.3464 -0.0006 5 1 1.8687 2.3965 -1.2124 6 1 1.8689 2.3964 1.2126 7 6 2.0268 -1.2698 -0.0006 8 1 3.1068 -1.2698 -0.0001 9 8 1.4153 -2.3292 -0.0006 10 6 2.1504 -3.4649 0.1063 11 6 3.5381 -3.4001 0.0917 12 6 4.2830 -4.5573 0.2011 13 6 3.6492 -5.7801 0.3308 14 7 4.4509 -7.0181 0.4539 15 8 5.7663 -6.9545 0.4453 16 8 3.8489 -8.1835 0.5720 17 6 2.2681 -5.8487 0.3400 18 6 1.5816 -7.1834 0.4752 19 8 0.1653 -6.9940 0.4650 20 6 1.5170 -4.6948 0.2309 21 1 -0.4851 0.8400 0.0004 22 1 4.0337 -2.4452 -0.0044 23 1 5.3618 -4.5075 0.1902 24 1 1.8788 -7.6513 1.4138 25 1 1.8683 -7.8256 -0.3576 26 1 -0.1615 -6.4313 1.1803 27 1 0.4385 -4.7486 0.2422 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034431138.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:12 Heat of formation + Delta-G solvation = -29.013253 kcal Electronic energy + Delta-G solvation = -16488.053247 eV Core-core repulsion = 13409.500507 eV Total energy + Delta-G solvation = -3078.552740 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.067 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.52828 -40.13374 -37.94169 -37.24363 -36.03820 -34.12583 -32.10508 -31.69432 -28.75736 -27.20078 -26.12674 -23.20287 -22.96968 -20.76764 -19.98851 -18.70757 -17.96569 -17.75808 -17.48827 -17.32171 -16.79949 -16.06976 -15.66685 -15.40581 -14.91824 -14.44029 -14.29336 -13.85939 -13.45048 -13.31569 -12.96546 -12.35924 -12.10795 -11.76517 -11.57916 -11.37182 -11.09435 -10.94327 -10.73120 -9.95971 -9.91010 -9.64939 -6.11642 -1.43105 0.53338 0.68269 1.04715 1.36937 1.58184 1.65509 1.89189 2.03020 2.17472 2.77069 3.49585 3.52080 3.89680 4.00664 4.18215 4.42684 4.56929 4.61524 4.69352 4.84937 5.04738 5.13213 5.34085 5.40897 5.62787 5.80616 6.32874 6.63553 6.78599 7.07219 7.18868 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.034722 B = 0.006380 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.210291 B = 4387.427863 C = 5172.137202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.679 5.679 2 C -0.003 4.003 3 Si 1.039 2.961 4 H -0.228 1.228 5 H -0.245 1.245 6 H -0.245 1.245 7 C -0.120 4.120 8 H 0.173 0.827 9 O -0.014 6.014 10 C -0.097 4.097 11 C -0.152 4.152 12 C -0.078 4.078 13 C -0.072 4.072 14 N 0.024 4.976 15 O -0.502 6.502 16 O -0.480 6.480 17 C -0.115 4.115 18 C 0.152 3.848 19 O -0.572 6.572 20 C -0.093 4.093 21 H 0.349 0.651 22 H 0.170 0.830 23 H 0.121 0.879 24 H 0.050 0.950 25 H 0.080 0.920 26 H 0.389 0.611 27 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.251 21.065 -0.097 22.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.302 5.302 2 C -0.235 4.235 3 Si 0.849 3.151 4 H -0.149 1.149 5 H -0.168 1.168 6 H -0.168 1.168 7 C -0.212 4.212 8 H 0.189 0.811 9 O 0.112 5.888 10 C -0.154 4.154 11 C -0.175 4.175 12 C -0.098 4.098 13 C -0.193 4.193 14 N 0.374 4.626 15 O -0.607 6.607 16 O -0.587 6.587 17 C -0.118 4.118 18 C 0.074 3.926 19 O -0.380 6.380 20 C -0.115 4.115 21 H 0.166 0.834 22 H 0.187 0.813 23 H 0.139 0.861 24 H 0.068 0.932 25 H 0.098 0.902 26 H 0.238 0.762 27 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.588 20.328 -0.606 21.706 hybrid contribution 0.630 -0.206 0.441 0.796 sum -6.958 20.121 -0.165 21.291 Atomic orbital electron populations 1.68814 1.10486 1.37938 1.12959 1.29624 0.97003 1.02828 0.94060 0.84222 0.79902 0.69785 0.81157 1.14935 1.16832 1.16826 1.25025 0.99283 0.82810 1.14091 0.81052 1.80297 1.42360 1.14661 1.51435 1.18564 0.89761 0.83739 1.23346 1.20580 0.91680 0.98123 1.07079 1.20169 0.99699 0.89777 1.00188 1.19739 0.90312 0.83032 1.26211 1.49268 1.01065 1.02845 1.09461 1.95886 0.92725 1.95894 1.76186 1.95856 1.72608 1.16110 1.74138 1.19552 0.90535 0.96892 1.04797 1.20850 0.78609 0.91778 1.01337 1.86468 1.21247 1.73707 1.56544 1.19549 0.99737 0.87536 1.04633 0.83403 0.81304 0.86135 0.93225 0.90200 0.76180 0.83358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 80. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -15.26 13.65 23.22 0.32 -14.94 15 2 C 0.00 -0.06 5.69 87.25 0.50 0.44 15 3 Si 1.04 11.12 29.64 68.60 2.03 13.15 15 4 H -0.23 -2.26 7.11 99.48 0.71 -1.55 15 5 H -0.24 -2.64 7.11 99.48 0.71 -1.93 15 6 H -0.24 -2.65 7.11 99.48 0.71 -1.95 15 7 C -0.12 -2.80 9.48 70.01 0.66 -2.13 15 8 H 0.17 3.08 5.02 -2.91 -0.01 3.06 15 9 O -0.01 -0.41 9.28 52.26 0.49 0.07 15 10 C -0.10 -3.39 6.59 22.60 0.15 -3.24 15 11 C -0.15 -5.28 9.12 22.40 0.20 -5.08 15 12 C -0.08 -3.52 9.57 22.25 0.21 -3.31 15 13 C -0.07 -3.85 6.88 36.41 0.25 -3.60 15 14 N 0.02 1.53 4.98 -46.38 -0.23 1.30 15 15 O -0.50 -34.53 19.15 3.52 0.07 -34.46 15 16 O -0.48 -31.97 15.94 3.51 0.06 -31.92 15 17 C -0.11 -5.35 5.87 -19.88 -0.12 -5.46 15 18 C 0.15 6.99 5.65 71.24 0.40 7.39 15 19 O -0.57 -21.36 12.69 -148.98 -1.89 -23.25 15 20 C -0.09 -3.55 9.16 22.40 0.21 -3.35 15 21 H 0.35 5.76 8.26 -92.71 -0.77 4.99 15 22 H 0.17 4.13 5.69 -2.91 -0.02 4.11 15 23 H 0.12 5.47 7.57 -2.91 -0.02 5.45 15 24 H 0.05 2.44 7.21 -2.38 -0.02 2.42 15 25 H 0.08 4.11 7.24 -2.39 -0.02 4.09 15 26 H 0.39 10.81 8.12 -74.06 -0.60 10.21 15 27 H 0.15 4.90 6.59 -2.91 -0.02 4.88 15 Total: -1.00 -78.54 250.39 3.95 -74.58 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: 0.65 Total: 33.79 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 2.47 Total: -18.34 kcal Atomic # 7 Polarization: -13.72 SS G_CDS: 0.09 Total: -13.64 kcal Atomic # 8 Polarization: -88.27 SS G_CDS: -1.28 Total: -89.55 kcal Atomic # 14 Polarization: 11.12 SS G_CDS: 2.03 Total: 13.15 kcal Total: -78.54 3.95 -74.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034431138.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.572 kcal (2) G-P(sol) polarization free energy of solvation -78.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds