Wall clock time and date at job start Sun Mar 29 2020 22:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35953 * 117.00066 * 2 1 4 4 C 1.38811 * 119.97843 * 359.72574 * 3 2 1 5 5 C 1.37986 * 120.05093 * 180.28079 * 4 3 2 6 6 C 1.39141 * 120.01001 * 359.97438 * 5 4 3 7 7 N 1.39486 * 120.01670 * 180.02562 * 6 5 4 8 8 C 1.34776 * 119.99973 * 324.84890 * 7 6 5 9 9 O 1.21774 * 120.00380 * 4.59406 * 8 7 6 10 10 C 1.41745 * 119.99807 * 184.59331 * 8 7 6 11 11 H 1.08004 * 120.00107 * 5.03984 * 10 8 7 12 12 C 1.40139 * 120.00173 * 185.04399 * 10 8 7 13 13 N 1.30627 * 119.99814 * 354.95281 * 12 10 8 14 14 Si 1.86803 * 120.00071 * 174.95900 * 12 10 8 15 15 H 1.48500 * 109.46808 * 94.99795 * 14 12 10 16 16 H 1.48498 * 109.46652 * 214.99302 * 14 12 10 17 17 H 1.48492 * 109.46872 * 334.99683 * 14 12 10 18 18 C 1.39084 * 119.95886 * 0.02562 * 6 5 4 19 19 C 1.38139 * 119.95251 * 359.97438 * 18 6 5 20 20 F 1.35093 * 120.00531 * 179.97438 * 19 18 6 21 21 H 1.08995 * 109.47058 * 299.99957 * 1 2 3 22 22 H 1.09007 * 109.46905 * 59.99934 * 1 2 3 23 23 H 1.08994 * 109.46739 * 179.97438 * 1 2 3 24 24 H 1.07995 * 119.97322 * 0.25629 * 4 3 2 25 25 H 1.08005 * 119.99458 * 179.97438 * 5 4 3 26 26 H 0.97001 * 119.99825 * 144.85158 * 7 6 5 27 27 H 0.96994 * 120.00045 * 180.02562 * 13 12 10 28 28 H 1.08004 * 120.02496 * 180.02562 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2898 2.3752 -0.0058 5 6 1.9147 3.6055 -0.0116 6 6 3.3041 3.6803 -0.0112 7 7 3.9360 4.9238 -0.0166 8 6 3.3908 5.9538 -0.6936 9 8 2.3057 5.8232 -1.2308 10 6 4.0804 7.1891 -0.7804 11 1 5.0771 7.2808 -0.3748 12 6 3.4689 8.2915 -1.3926 13 7 2.3051 8.1555 -1.9701 14 14 4.3181 9.9553 -1.3829 15 1 5.0828 10.1280 -2.6441 16 1 3.2996 11.0301 -1.2704 17 1 5.2468 10.0302 -0.2266 18 6 4.0624 2.5143 -0.0055 19 6 3.4351 1.2836 0.0004 20 9 4.1706 0.1505 0.0055 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3632 -1.0276 -0.0005 24 1 0.2114 2.3178 -0.0060 25 1 1.3253 4.5105 -0.0165 26 1 4.7678 5.0472 0.4669 27 1 1.8821 8.9184 -2.3941 28 1 5.1410 2.5712 -0.0047 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037290885.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:45 Heat of formation + Delta-G solvation = -115.181129 kcal Electronic energy + Delta-G solvation = -16356.920131 eV Core-core repulsion = 13287.003661 eV Total energy + Delta-G solvation = -3069.916470 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.82572 -41.16980 -39.95539 -37.94652 -35.07431 -34.38971 -31.67146 -30.43854 -28.74430 -27.52644 -24.04484 -23.52956 -21.76789 -19.63344 -19.22270 -18.38486 -17.83044 -17.28014 -17.05884 -16.50199 -16.01409 -15.85368 -15.72294 -15.17175 -14.91392 -14.66107 -13.78841 -13.63843 -13.34317 -13.15829 -12.81386 -12.74229 -12.67668 -12.22983 -12.04559 -11.99719 -10.99803 -10.52514 -9.98102 -9.75091 -8.55899 -8.39078 -7.01004 0.15386 0.29818 1.40431 1.41900 1.58486 2.20339 2.26914 2.32186 2.63474 2.85886 3.32153 3.61312 3.80224 4.05475 4.24985 4.41306 4.44127 4.48620 4.65747 4.74360 4.96231 5.22769 5.26752 5.40716 5.53580 5.88989 6.14586 6.22014 6.41799 6.74600 7.37848 8.37134 8.55706 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.049596 B = 0.005522 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.422307 B = 5069.317975 C = 5542.925165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.329 6.329 3 C 0.057 3.943 4 C -0.152 4.152 5 C -0.117 4.117 6 C 0.159 3.841 7 N -0.692 5.692 8 C 0.531 3.469 9 O -0.612 6.612 10 C -0.564 4.564 11 H 0.092 0.908 12 C 0.033 3.967 13 N -0.799 5.799 14 Si 1.000 3.000 15 H -0.263 1.263 16 H -0.271 1.271 17 H -0.247 1.247 18 C -0.161 4.161 19 C 0.076 3.924 20 F -0.138 7.138 21 H 0.066 0.934 22 H 0.060 0.940 23 H 0.126 0.874 24 H 0.159 0.841 25 H 0.121 0.879 26 H 0.408 0.592 27 H 0.279 0.721 28 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.066 -8.893 4.966 10.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.010 3.990 4 C -0.171 4.171 5 C -0.138 4.138 6 C 0.061 3.939 7 N -0.337 5.337 8 C 0.340 3.660 9 O -0.499 6.499 10 C -0.599 4.599 11 H 0.110 0.890 12 C -0.185 4.185 13 N -0.427 5.427 14 Si 0.819 3.181 15 H -0.187 1.187 16 H -0.196 1.196 17 H -0.170 1.170 18 C -0.183 4.183 19 C 0.055 3.945 20 F -0.117 7.117 21 H 0.085 0.915 22 H 0.079 0.921 23 H 0.144 0.856 24 H 0.177 0.823 25 H 0.138 0.862 26 H 0.244 0.756 27 H 0.090 0.910 28 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.712 -9.069 4.469 10.136 hybrid contribution 0.437 0.731 0.021 0.852 sum -0.275 -8.338 4.490 9.474 Atomic orbital electron populations 1.23390 0.76178 1.05828 1.02301 1.86047 1.23686 1.25243 1.89407 1.18919 0.90585 0.85884 1.03629 1.21148 1.01098 0.89971 1.04866 1.21290 0.94066 0.98208 1.00282 1.17764 0.91859 0.86052 0.98217 1.43656 1.27839 1.08166 1.54007 1.17398 0.85928 0.84093 0.78558 1.90593 1.24182 1.83157 1.51964 1.20570 1.04138 0.95186 1.39989 0.89013 1.26993 0.94820 1.05127 0.91581 1.70146 1.15261 1.33062 1.24236 0.84965 0.78471 0.74603 0.80083 1.18746 1.19607 1.17029 1.20777 1.01413 0.88664 1.07402 1.16667 0.86180 0.82231 1.09387 1.91441 1.76778 1.48933 1.94518 0.91491 0.92142 0.85573 0.82338 0.86153 0.75569 0.91037 0.82220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 15 2 O -0.33 -9.75 10.36 -93.03 -0.96 -10.71 15 3 C 0.06 1.90 6.70 22.61 0.15 2.05 15 4 C -0.15 -5.20 9.03 22.35 0.20 -4.99 15 5 C -0.12 -4.95 8.69 22.43 0.19 -4.76 15 6 C 0.16 6.61 6.30 38.34 0.24 6.85 15 7 N -0.69 -30.66 5.31 -311.36 -1.65 -32.31 15 8 C 0.53 29.36 7.41 85.11 0.63 29.99 15 9 O -0.61 -38.49 12.32 -4.59 -0.06 -38.54 15 10 C -0.56 -30.14 9.31 23.60 0.22 -29.92 15 11 H 0.09 4.34 7.85 -2.91 -0.02 4.32 15 12 C 0.03 1.75 5.49 85.33 0.47 2.22 15 13 N -0.80 -46.10 11.75 21.85 0.26 -45.85 15 14 Si 1.00 38.37 29.56 68.60 2.03 40.40 15 15 H -0.26 -9.69 7.11 99.48 0.71 -8.99 15 16 H -0.27 -10.08 7.11 99.48 0.71 -9.37 15 17 H -0.25 -8.80 7.11 99.48 0.71 -8.09 15 18 C -0.16 -5.64 9.94 22.45 0.22 -5.41 15 19 C 0.08 2.64 7.31 22.45 0.16 2.80 15 20 F -0.14 -4.68 17.11 44.97 0.77 -3.91 15 21 H 0.07 1.14 7.67 -2.39 -0.02 1.12 15 22 H 0.06 1.12 7.65 -2.38 -0.02 1.11 15 23 H 0.13 1.67 8.14 -2.39 -0.02 1.65 15 24 H 0.16 4.40 6.29 -2.91 -0.02 4.38 15 25 H 0.12 5.91 6.22 -2.91 -0.02 5.89 15 26 H 0.41 15.09 8.78 -92.71 -0.81 14.27 15 27 H 0.28 14.51 8.29 -92.71 -0.77 13.74 15 28 H 0.16 4.72 8.06 -2.91 -0.02 4.70 15 Total: -1.00 -70.29 256.64 4.39 -65.90 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.40 Total: 24.74 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: 3.61 Total: 0.27 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -1.40 Total: -78.16 kcal Atomic # 8 Polarization: -48.23 SS G_CDS: -1.02 Total: -49.25 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.77 Total: -3.91 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.40 kcal Total: -70.29 4.39 -65.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037290885.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.280 kcal (2) G-P(sol) polarization free energy of solvation -70.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds