Wall clock time and date at job start Sun Mar 29 2020 22:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00205 * 2 1 4 4 H 1.48497 * 109.47471 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46935 * 300.00060 * 3 2 1 6 6 H 1.48500 * 109.47585 * 59.99963 * 3 2 1 7 7 C 1.38958 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99799 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99684 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99289 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00490 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99575 * 180.02562 * 10 9 7 13 13 C 1.52996 * 109.47094 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47210 * 179.97438 * 13 12 10 15 15 C 1.50706 * 109.47116 * 179.97438 * 14 13 12 16 16 C 1.33391 * 125.19937 * 90.00083 * 15 14 13 17 17 C 1.38423 * 114.92045 * 179.97438 * 16 15 14 18 18 C 1.33390 * 114.91979 * 359.97438 * 17 16 15 19 19 S 1.75878 * 125.20693 * 269.69344 * 15 14 13 20 20 H 0.96998 * 119.99854 * 359.97438 * 1 2 3 21 21 H 0.96992 * 120.00023 * 0.02562 * 9 7 2 22 22 H 1.08997 * 109.47561 * 59.99923 * 12 10 9 23 23 H 1.09000 * 109.46976 * 299.99617 * 12 10 9 24 24 H 1.09000 * 109.47531 * 59.99538 * 13 12 10 25 25 H 1.09008 * 109.47250 * 300.00113 * 13 12 10 26 26 H 1.09000 * 109.46884 * 60.00289 * 14 13 12 27 27 H 1.09000 * 109.46955 * 299.99604 * 14 13 12 28 28 H 1.07995 * 122.54106 * 359.95411 * 16 15 14 29 29 H 1.08001 * 122.53959 * 180.02562 * 17 16 15 30 30 H 1.07998 * 125.20163 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8895 2.3965 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0001 12 6 1.2437 -4.8630 -0.0011 13 6 2.2379 -6.0259 -0.0004 14 6 1.4729 -7.3509 -0.0003 15 6 2.4522 -8.4964 -0.0002 16 6 2.9518 -9.0808 1.0899 17 6 3.8365 -10.1164 0.8430 18 6 4.0549 -10.3734 -0.4476 19 16 3.1054 -9.2722 -1.4371 20 1 -0.4850 0.8400 0.0004 21 1 0.3534 -2.3906 -0.0005 22 1 0.6174 -4.9206 -0.8913 23 1 0.6168 -4.9209 0.8886 24 1 2.8640 -5.9682 0.8901 25 1 2.8653 -5.9682 -0.8899 26 1 0.8467 -7.4089 -0.8906 27 1 0.8459 -7.4084 0.8895 28 1 2.6865 -8.7693 2.0893 29 1 4.3131 -10.6746 1.6353 30 1 4.7113 -11.1426 -0.8268 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037714275.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:50 Heat of formation + Delta-G solvation = -26.757466 kcal Electronic energy + Delta-G solvation = -13882.124317 eV Core-core repulsion = 11382.255361 eV Total energy + Delta-G solvation = -2499.868956 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.38839 -37.84150 -34.60286 -33.73564 -31.23219 -30.09690 -26.79491 -24.81199 -23.25463 -21.39102 -19.25769 -19.03063 -17.82889 -17.06852 -15.77542 -15.48765 -15.03227 -14.48704 -14.00100 -13.49290 -13.38052 -13.03861 -12.63537 -12.30182 -12.25512 -11.71756 -11.38255 -11.29917 -11.06053 -10.98946 -10.73276 -10.33028 -10.31019 -10.19911 -9.50828 -8.62983 -8.48592 -8.35164 -7.95009 -6.40303 -3.80961 0.99834 1.63061 2.00196 2.73972 3.17331 3.27699 3.35306 3.94778 4.19153 4.71751 4.99569 5.04709 5.16994 5.28034 5.42758 5.54659 5.61845 5.73648 5.83453 5.91295 6.07510 6.11603 6.28431 6.44467 6.52168 6.58322 6.72154 7.56913 8.08280 8.63034 9.19564 9.57301 10.08843 10.77562 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.063989 B = 0.003860 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.469029 B = 7252.367844 C = 7355.176588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.439 3.561 11 O -0.597 6.597 12 C -0.131 4.131 13 C -0.091 4.091 14 C -0.054 4.054 15 C -0.155 4.155 16 C -0.150 4.150 17 C -0.130 4.130 18 C -0.225 4.225 19 S 0.092 5.908 20 H 0.271 0.729 21 H 0.393 0.607 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.139 0.861 29 H 0.137 0.863 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.057 -17.581 -0.088 17.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.483 6.483 12 C -0.171 4.171 13 C -0.130 4.130 14 C -0.093 4.093 15 C -0.273 4.273 16 C -0.180 4.180 17 C -0.161 4.161 18 C -0.361 4.361 19 S 0.355 5.645 20 H 0.081 0.919 21 H 0.226 0.774 22 H 0.095 0.905 23 H 0.096 0.904 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.157 0.843 29 H 0.154 0.846 30 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.563 -17.223 -1.646 17.371 hybrid contribution 0.016 0.622 1.521 1.643 sum 1.579 -16.601 -0.125 16.676 Atomic orbital electron populations 1.69623 1.05939 1.28024 1.50756 1.25268 0.95633 0.99730 0.97362 0.85808 0.79722 0.81161 0.77707 1.19229 1.20745 1.20745 1.19783 0.93423 0.82396 1.47401 0.87917 1.41933 1.09229 1.04735 1.64110 1.19993 0.88303 0.85098 0.84038 1.90516 1.14100 1.87488 1.56169 1.21494 0.98832 0.94052 1.02765 1.21256 0.97447 0.90408 1.03874 1.20306 0.95109 0.90713 1.03172 1.24617 1.04710 1.02619 0.95340 1.20134 1.00227 0.98128 0.99488 1.20158 1.00325 0.99305 0.96337 1.25549 1.07659 1.05921 0.96946 1.84310 1.41107 1.28922 1.10186 0.91941 0.77392 0.90490 0.90442 0.91105 0.91281 0.90801 0.89930 0.84317 0.84568 0.82230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.80 13.05 55.50 0.72 -24.07 16 2 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 3 Si 0.93 21.25 29.55 -169.99 -5.02 16.22 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.30 -8.52 9.68 -14.93 -0.14 -8.67 16 8 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 9 N -0.56 -14.57 5.29 -10.96 -0.06 -14.63 16 10 C 0.44 10.54 7.78 -10.98 -0.09 10.46 16 11 O -0.60 -16.55 15.56 5.54 0.09 -16.46 16 12 C -0.13 -2.27 5.70 -27.88 -0.16 -2.42 16 13 C -0.09 -1.46 4.49 -26.73 -0.12 -1.58 16 14 C -0.05 -0.66 5.71 -27.88 -0.16 -0.82 16 15 C -0.16 -1.96 5.76 -36.00 -0.21 -2.16 16 16 C -0.15 -1.77 10.05 -41.21 -0.41 -2.19 16 17 C -0.13 -1.40 10.18 -41.21 -0.42 -1.82 16 18 C -0.23 -2.36 11.23 29.04 0.33 -2.04 16 19 S 0.09 1.07 23.33 -107.50 -2.51 -1.43 16 20 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 21 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 22 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 23 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 24 H 0.07 1.23 8.10 -51.93 -0.42 0.80 16 25 H 0.07 1.21 8.10 -51.92 -0.42 0.79 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 29 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 280.48 15.07 4.23 4.23 Total: -1.00 -31.50 280.48 -7.66 -39.16 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -3.63 Total: 7.73 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -1.48 Total: -10.75 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.67 Total: -38.70 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: 0.09 Total: -16.46 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.51 Total: -1.43 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.50 -7.66 -39.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037714275.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.405 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds