Wall clock time and date at job start Sun Mar 29 2020 22:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46927 * 2 1 4 4 C 1.46498 * 119.99634 * 90.00234 * 3 2 1 5 5 C 1.50695 * 109.47363 * 90.00131 * 4 3 2 6 6 C 1.33396 * 125.20605 * 89.99183 * 5 4 3 7 7 C 1.38421 * 114.92157 * 179.97438 * 6 5 4 8 8 C 1.33389 * 114.92180 * 0.02562 * 7 6 5 9 9 S 1.75882 * 109.59340 * 359.75555 * 8 7 6 10 10 C 1.34772 * 119.99716 * 269.99936 * 3 2 1 11 11 O 1.21689 * 119.99667 * 179.97438 * 10 3 2 12 12 C 1.46376 * 120.00157 * 0.02562 * 10 3 2 13 13 H 1.07995 * 120.00207 * 355.04360 * 12 10 3 14 14 C 1.40055 * 119.99494 * 175.03957 * 12 10 3 15 15 N 1.30666 * 120.00467 * 6.21936 * 14 12 10 16 16 Si 1.86800 * 119.99568 * 186.22095 * 14 12 10 17 17 H 1.48499 * 109.47223 * 94.98234 * 16 14 12 18 18 H 1.48497 * 109.47091 * 214.98295 * 16 14 12 19 19 H 1.48503 * 109.47178 * 334.98264 * 16 14 12 20 20 H 1.09010 * 109.46954 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47440 * 299.99696 * 1 2 3 22 22 H 1.08994 * 109.47275 * 60.00170 * 1 2 3 23 23 H 1.08996 * 109.46743 * 240.00045 * 2 1 3 24 24 H 1.08999 * 109.47403 * 120.00308 * 2 1 3 25 25 H 1.09001 * 109.47319 * 329.99358 * 4 3 2 26 26 H 1.09001 * 109.46439 * 209.99755 * 4 3 2 27 27 H 1.08001 * 122.53252 * 359.96502 * 6 5 4 28 28 H 1.08004 * 122.53752 * 180.02562 * 7 6 5 29 29 H 1.07994 * 125.20202 * 180.02562 * 8 7 6 30 30 H 0.97003 * 120.00074 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.6857 1.8351 1.7038 6 6 4.7267 2.6042 1.3807 7 6 5.9416 2.1888 1.8979 8 6 5.8874 1.0820 2.6405 9 16 4.2275 0.5061 2.7206 10 6 2.2429 2.0165 -1.1672 11 8 2.6480 3.1640 -1.1672 12 6 1.9984 1.3267 -2.4348 13 1 1.7153 0.2845 -2.4366 14 6 2.1317 2.0183 -3.6454 15 7 2.5908 3.2416 -3.6519 16 14 1.6531 1.1917 -5.2507 17 1 0.2582 1.5614 -5.6012 18 1 2.5697 1.6386 -6.3301 19 1 1.7508 -0.2821 -5.0970 20 1 -0.3633 -1.0278 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 1.5816 1.6877 2.0284 26 1 2.0955 3.1410 1.1384 27 1 4.6288 3.4842 0.7623 28 1 6.8635 2.7205 1.7141 29 1 6.7327 0.6139 3.1227 30 1 2.6834 3.7204 -4.4905 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042317376.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:22 Heat of formation + Delta-G solvation = -4.424840 kcal Electronic energy + Delta-G solvation = -14960.547102 eV Core-core repulsion = 12461.646562 eV Total energy + Delta-G solvation = -2498.900541 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.20520 -36.92003 -34.34643 -32.55401 -31.08291 -28.61245 -26.72952 -24.94569 -22.65000 -22.23611 -19.34233 -18.58377 -16.81999 -16.21485 -15.63773 -15.06124 -14.86319 -14.22770 -13.46182 -12.91666 -12.69217 -12.47478 -12.35897 -11.99698 -11.73613 -11.58201 -11.33854 -11.13526 -10.93584 -10.87815 -10.45362 -10.35712 -10.21258 -9.97888 -8.85356 -8.32840 -8.04925 -7.54794 -7.30858 -6.20492 -4.63679 1.42872 2.06525 2.41035 3.12761 3.20013 3.22439 3.25140 4.09688 4.54772 4.63933 5.31391 5.42597 5.65617 5.71415 5.78291 5.95176 6.07379 6.09178 6.18111 6.31704 6.38968 6.61734 6.63805 6.87602 6.90157 6.99737 7.45360 7.61054 8.12666 8.33729 9.02384 9.40993 10.56708 10.75545 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.029595 B = 0.007750 C = 0.006855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.874131 B = 3612.267562 C = 4083.605321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.123 3.877 3 N -0.635 5.635 4 C 0.192 3.808 5 C -0.161 4.161 6 C -0.129 4.129 7 C -0.126 4.126 8 C -0.228 4.228 9 S 0.061 5.939 10 C 0.560 3.440 11 O -0.574 6.574 12 C -0.541 4.541 13 H 0.072 0.928 14 C 0.088 3.912 15 N -0.766 5.766 16 Si 0.904 3.096 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.264 1.264 20 H 0.049 0.951 21 H 0.043 0.957 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.047 0.953 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.146 0.854 28 H 0.134 0.866 29 H 0.156 0.844 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.132 -5.782 9.292 11.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.001 4.001 3 N -0.373 5.373 4 C 0.065 3.935 5 C -0.280 4.280 6 C -0.159 4.159 7 C -0.157 4.157 8 C -0.364 4.364 9 S 0.323 5.677 10 C 0.366 3.634 11 O -0.457 6.457 12 C -0.577 4.577 13 H 0.090 0.910 14 C -0.132 4.132 15 N -0.395 5.395 16 Si 0.728 3.272 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.189 1.189 20 H 0.068 0.932 21 H 0.063 0.937 22 H 0.084 0.916 23 H 0.098 0.902 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.110 0.890 27 H 0.163 0.837 28 H 0.151 0.849 29 H 0.174 0.826 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.698 -6.193 9.868 11.672 hybrid contribution 0.603 0.598 -1.484 1.710 sum 1.301 -5.595 8.385 10.164 Atomic orbital electron populations 1.22183 0.97603 1.00477 1.02180 1.21168 0.93142 0.84572 1.01225 1.48204 1.70887 1.13529 1.04632 1.19493 0.87297 0.99624 0.87042 1.25336 1.01840 0.97918 1.02903 1.20300 0.91170 1.02674 1.01745 1.20219 0.99070 0.97171 0.99274 1.25410 0.99584 1.02379 1.08992 1.83928 1.01802 1.30987 1.50996 1.18240 0.77231 0.85791 0.82151 1.90580 1.50200 1.18724 1.86149 1.20992 1.49705 0.97829 0.89215 0.90957 1.25718 0.92830 0.94472 1.00150 1.70021 1.32254 1.10046 1.27152 0.86417 0.78873 0.80308 0.81562 1.19798 1.20491 1.18857 0.93184 0.93738 0.91577 0.90208 0.93446 0.91857 0.88985 0.83664 0.84854 0.82649 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 10.24 37.16 0.38 -2.36 16 2 C 0.12 2.31 5.87 -4.04 -0.02 2.29 16 3 N -0.64 -14.22 2.46 -176.73 -0.43 -14.65 16 4 C 0.19 3.78 5.90 -5.20 -0.03 3.75 16 5 C -0.16 -3.02 6.09 -36.00 -0.22 -3.24 16 6 C -0.13 -2.48 10.05 -41.21 -0.41 -2.89 16 7 C -0.13 -2.05 10.18 -41.21 -0.42 -2.47 16 8 C -0.23 -3.36 11.23 29.04 0.33 -3.04 16 9 S 0.06 0.95 23.33 -107.50 -2.51 -1.56 16 10 C 0.56 15.54 7.61 -12.99 -0.10 15.44 16 11 O -0.57 -17.91 14.62 5.20 0.08 -17.83 16 12 C -0.54 -14.94 8.76 -35.63 -0.31 -15.25 16 13 H 0.07 1.84 5.95 -52.49 -0.31 1.53 16 14 C 0.09 2.43 5.49 -17.37 -0.10 2.33 16 15 N -0.77 -22.64 11.85 55.55 0.66 -21.98 16 16 Si 0.90 19.99 29.56 -169.99 -5.03 14.97 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 20 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 21 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 23 H 0.08 1.58 6.04 -51.93 -0.31 1.27 16 24 H 0.05 0.78 8.07 -51.93 -0.42 0.37 16 25 H 0.06 1.06 8.07 -51.93 -0.42 0.64 16 26 H 0.09 1.96 7.42 -51.93 -0.39 1.58 16 27 H 0.15 3.08 8.06 -52.49 -0.42 2.66 16 28 H 0.13 1.85 8.06 -52.48 -0.42 1.43 16 29 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.27 7.20 8.29 -40.82 -0.34 6.87 16 LS Contribution 276.99 15.07 4.17 4.17 Total: -1.00 -32.23 276.99 -7.49 -39.71 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -3.52 Total: 2.62 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -0.91 Total: -5.45 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.22 Total: -36.63 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.08 Total: -17.83 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.97 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.51 Total: -1.56 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.23 -7.49 -39.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042317376.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.288 kcal (2) G-P(sol) polarization free energy of solvation -32.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds