Wall clock time and date at job start Sun Mar 29 2020 22:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46927 * 2 1 4 4 C 1.46498 * 119.99634 * 90.00234 * 3 2 1 5 5 C 1.50695 * 109.47363 * 90.00131 * 4 3 2 6 6 C 1.33396 * 125.20605 * 89.99183 * 5 4 3 7 7 C 1.38421 * 114.92157 * 179.97438 * 6 5 4 8 8 C 1.33389 * 114.92180 * 0.02562 * 7 6 5 9 9 S 1.75882 * 109.59340 * 359.75555 * 8 7 6 10 10 C 1.34772 * 119.99716 * 269.99936 * 3 2 1 11 11 O 1.21689 * 119.99667 * 179.97438 * 10 3 2 12 12 C 1.46376 * 120.00157 * 0.02562 * 10 3 2 13 13 H 1.07995 * 120.00207 * 355.04360 * 12 10 3 14 14 C 1.40055 * 119.99494 * 175.03957 * 12 10 3 15 15 N 1.30666 * 120.00467 * 6.21936 * 14 12 10 16 16 Si 1.86800 * 119.99568 * 186.22095 * 14 12 10 17 17 H 1.48499 * 109.47223 * 94.98234 * 16 14 12 18 18 H 1.48497 * 109.47091 * 214.98295 * 16 14 12 19 19 H 1.48503 * 109.47178 * 334.98264 * 16 14 12 20 20 H 1.09010 * 109.46954 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47440 * 299.99696 * 1 2 3 22 22 H 1.08994 * 109.47275 * 60.00170 * 1 2 3 23 23 H 1.08996 * 109.46743 * 240.00045 * 2 1 3 24 24 H 1.08999 * 109.47403 * 120.00308 * 2 1 3 25 25 H 1.09001 * 109.47319 * 329.99358 * 4 3 2 26 26 H 1.09001 * 109.46439 * 209.99755 * 4 3 2 27 27 H 1.08001 * 122.53252 * 359.96502 * 6 5 4 28 28 H 1.08004 * 122.53752 * 180.02562 * 7 6 5 29 29 H 1.07994 * 125.20202 * 180.02562 * 8 7 6 30 30 H 0.97003 * 120.00074 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.6857 1.8351 1.7038 6 6 4.7267 2.6042 1.3807 7 6 5.9416 2.1888 1.8979 8 6 5.8874 1.0820 2.6405 9 16 4.2275 0.5061 2.7206 10 6 2.2429 2.0165 -1.1672 11 8 2.6480 3.1640 -1.1672 12 6 1.9984 1.3267 -2.4348 13 1 1.7153 0.2845 -2.4366 14 6 2.1317 2.0183 -3.6454 15 7 2.5908 3.2416 -3.6519 16 14 1.6531 1.1917 -5.2507 17 1 0.2582 1.5614 -5.6012 18 1 2.5697 1.6386 -6.3301 19 1 1.7508 -0.2821 -5.0970 20 1 -0.3633 -1.0278 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 1.5816 1.6877 2.0284 26 1 2.0955 3.1410 1.1384 27 1 4.6288 3.4842 0.7623 28 1 6.8635 2.7205 1.7141 29 1 6.7327 0.6139 3.1227 30 1 2.6834 3.7204 -4.4905 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042317376.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:22 Heat of formation + Delta-G solvation = -24.602148 kcal Electronic energy + Delta-G solvation = -14961.422056 eV Core-core repulsion = 12461.646562 eV Total energy + Delta-G solvation = -2499.775494 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.98062 -38.42846 -36.23411 -34.64254 -32.55831 -30.18984 -28.62966 -26.59745 -24.06412 -23.83828 -21.17959 -19.98961 -18.50043 -17.93332 -17.52220 -16.61187 -16.39370 -16.02388 -15.12822 -14.48872 -14.33317 -14.00605 -13.75774 -13.53193 -13.31288 -13.19128 -13.01065 -12.86562 -12.72751 -12.43758 -12.05850 -11.99906 -11.72342 -11.65000 -10.91272 -9.90845 -9.49028 -9.30340 -9.13526 -8.26807 -6.79585 0.09032 0.76446 1.09449 1.39139 1.39839 1.55120 1.84252 2.24958 2.49310 2.95089 3.62257 3.97654 4.18686 4.27537 4.29900 4.58993 4.69424 4.71245 4.74941 4.77461 4.98660 5.13750 5.26186 5.37693 5.47817 5.51985 5.61113 5.81979 6.16894 6.40274 6.90991 7.44434 8.50936 8.70349 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.029595 B = 0.007750 C = 0.006855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.874131 B = 3612.267562 C = 4083.605321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.119 3.881 3 N -0.636 5.636 4 C 0.193 3.807 5 C -0.195 4.195 6 C -0.148 4.148 7 C -0.147 4.147 8 C -0.210 4.210 9 S 0.120 5.880 10 C 0.545 3.455 11 O -0.624 6.624 12 C -0.564 4.564 13 H 0.090 0.910 14 C 0.030 3.970 15 N -0.821 5.821 16 Si 0.989 3.011 17 H -0.264 1.264 18 H -0.275 1.275 19 H -0.247 1.247 20 H 0.085 0.915 21 H 0.054 0.946 22 H 0.037 0.963 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.106 0.894 28 H 0.152 0.848 29 H 0.196 0.804 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.087 -8.860 10.194 13.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.004 4.004 3 N -0.371 5.371 4 C 0.067 3.933 5 C -0.313 4.313 6 C -0.179 4.179 7 C -0.177 4.177 8 C -0.345 4.345 9 S 0.382 5.618 10 C 0.351 3.649 11 O -0.511 6.511 12 C -0.601 4.601 13 H 0.108 0.892 14 C -0.185 4.185 15 N -0.450 5.450 16 Si 0.809 3.191 17 H -0.188 1.188 18 H -0.200 1.200 19 H -0.171 1.171 20 H 0.103 0.897 21 H 0.073 0.927 22 H 0.056 0.944 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.116 0.884 26 H 0.077 0.923 27 H 0.124 0.876 28 H 0.170 0.830 29 H 0.213 0.787 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.635 -9.319 10.823 14.296 hybrid contribution 0.653 1.519 -1.616 2.311 sum 1.287 -7.800 9.207 12.135 Atomic orbital electron populations 1.22092 0.95676 1.02489 1.01301 1.21385 0.94690 0.82394 1.01974 1.48027 1.70084 1.14820 1.04216 1.19516 0.89215 0.97876 0.86661 1.25237 1.01011 1.00278 1.04811 1.20294 0.93314 1.02098 1.02181 1.20300 0.98557 0.98524 1.00350 1.25925 1.00545 1.01022 1.07001 1.83608 1.01598 1.27985 1.48610 1.18570 0.76862 0.85461 0.84015 1.90539 1.52270 1.20850 1.87410 1.21477 1.49903 0.98821 0.89873 0.89220 1.26927 0.92049 0.94945 1.04587 1.70196 1.33968 1.12283 1.28591 0.85126 0.78636 0.79688 0.75639 1.18845 1.20003 1.17060 0.89664 0.92680 0.94394 0.91509 0.90518 0.88425 0.92263 0.87589 0.83010 0.78650 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.87 10.24 71.98 0.74 -4.13 16 2 C 0.12 4.26 5.87 86.38 0.51 4.76 16 3 N -0.64 -28.85 2.46 -831.26 -2.04 -30.90 16 4 C 0.19 7.74 5.90 85.63 0.50 8.24 16 5 C -0.19 -7.32 6.09 24.59 0.15 -7.17 16 6 C -0.15 -5.91 10.05 21.22 0.21 -5.70 16 7 C -0.15 -4.65 10.18 21.22 0.22 -4.43 16 8 C -0.21 -5.48 11.23 66.72 0.75 -4.73 16 9 S 0.12 3.35 23.33 -56.49 -1.32 2.03 16 10 C 0.54 31.51 7.61 86.36 0.66 32.16 16 11 O -0.62 -41.49 14.62 -4.31 -0.06 -41.56 16 12 C -0.56 -31.82 8.76 24.83 0.22 -31.61 16 13 H 0.09 4.57 5.95 -2.91 -0.02 4.55 16 14 C 0.03 1.67 5.49 85.31 0.47 2.14 16 15 N -0.82 -50.52 11.85 21.84 0.26 -50.26 16 16 Si 0.99 41.26 29.56 68.60 2.03 43.29 16 17 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 18 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 19 H -0.25 -9.53 7.11 99.48 0.71 -8.83 16 20 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 21 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.07 2.57 6.04 -2.39 -0.01 2.55 16 24 H 0.08 2.30 8.07 -2.39 -0.02 2.28 16 25 H 0.10 3.14 8.07 -2.39 -0.02 3.12 16 26 H 0.06 2.72 7.42 -2.39 -0.02 2.70 16 27 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 28 H 0.15 4.09 8.06 -2.91 -0.02 4.06 16 29 H 0.20 3.53 8.06 -2.91 -0.02 3.51 16 30 H 0.27 15.24 8.29 -92.71 -0.77 14.47 16 Total: -1.00 -74.23 276.99 4.42 -69.81 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 1.14 Total: 18.04 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 4.42 Total: -10.45 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -1.78 Total: -81.16 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -0.06 Total: -41.56 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -1.32 Total: 2.03 kcal Total: -74.23 4.42 -69.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042317376.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.212 kcal (2) G-P(sol) polarization free energy of solvation -74.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds