Wall clock time and date at job start Sun Mar 29 2020 22:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46506 * 109.46591 * 2 1 4 4 C 1.46494 * 120.00004 * 265.08816 * 3 2 1 5 5 C 1.50705 * 109.47047 * 262.22123 * 4 3 2 6 6 H 1.07996 * 120.00224 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99991 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99964 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99853 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46862 * 89.99920 * 9 7 5 11 11 H 1.48497 * 109.47127 * 209.99762 * 9 7 5 12 12 H 1.48497 * 109.47361 * 329.99803 * 9 7 5 13 13 C 1.34777 * 119.99696 * 85.09415 * 3 2 1 14 14 O 1.21702 * 120.00336 * 1.93332 * 13 3 2 15 15 C 1.46588 * 119.99920 * 181.94198 * 13 3 2 16 16 C 1.36641 * 125.45710 * 172.13937 * 15 13 3 17 17 C 1.37477 * 113.29735 * 179.97438 * 16 15 13 18 18 C 1.33819 * 115.09582 * 359.97438 * 17 16 15 19 19 S 1.70612 * 110.95828 * 0.02562 * 18 17 16 20 20 H 1.09004 * 109.46845 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47517 * 299.99900 * 1 2 3 22 22 H 1.09003 * 109.47071 * 60.00008 * 1 2 3 23 23 H 1.08998 * 109.47051 * 240.00699 * 2 1 3 24 24 H 1.08994 * 109.47348 * 119.99906 * 2 1 3 25 25 H 1.08993 * 109.47544 * 22.22447 * 4 3 2 26 26 H 1.09007 * 109.46882 * 142.22643 * 4 3 2 27 27 H 0.97000 * 119.99700 * 180.02562 * 8 7 5 28 28 H 1.07998 * 123.35273 * 0.26702 * 16 15 13 29 29 H 1.07993 * 122.44894 * 180.02562 * 17 16 15 30 30 H 1.07997 * 124.51882 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3648 2.0357 -1.2640 5 6 3.8538 1.9525 -1.4811 6 1 4.4794 1.4609 -0.7508 7 6 4.4174 2.5030 -2.6127 8 7 5.7167 2.4299 -2.8024 9 14 3.3353 3.3527 -3.8762 10 1 3.2154 4.7933 -3.5365 11 1 3.9429 3.2108 -5.2238 12 1 1.9874 2.7295 -3.8729 13 6 2.1487 2.0499 1.1630 14 8 1.8946 1.4949 2.2158 15 6 2.5966 3.4457 1.1597 16 6 2.6229 4.2722 2.2475 17 6 3.0901 5.5331 1.9611 18 6 3.4355 5.7339 0.6840 19 16 3.1870 4.3241 -0.2443 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.8495 1.5368 -2.0847 26 1 2.0610 3.0819 -1.2267 27 1 6.1132 2.8176 -3.5983 28 1 2.3122 3.9642 3.2349 29 1 3.1732 6.3046 2.7121 30 1 3.8203 6.6642 0.2930 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454250.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:38 Heat of formation + Delta-G solvation = 0.816558 kcal Electronic energy + Delta-G solvation = -15256.630223 eV Core-core repulsion = 12757.956967 eV Total energy + Delta-G solvation = -2498.673257 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.20349 -36.83492 -35.25780 -33.00036 -31.18995 -28.70955 -27.82894 -24.51505 -22.86461 -22.51075 -19.71774 -18.34191 -17.28337 -17.12377 -15.72841 -15.07220 -14.77919 -14.54957 -13.91720 -13.29069 -13.01602 -12.73606 -12.68682 -12.37337 -12.05239 -11.82770 -11.75186 -11.46120 -11.11832 -10.85540 -10.50628 -10.43004 -9.84254 -9.41383 -9.26789 -8.99361 -8.21880 -7.85928 -7.62118 -6.41440 -4.37917 1.30339 2.40877 2.90097 3.03791 3.08089 3.12538 3.16793 3.76418 3.96561 4.08370 4.89304 5.27098 5.58968 5.63151 5.69084 5.76643 5.96539 6.11036 6.12898 6.19072 6.32428 6.40217 6.55290 6.61320 6.87985 7.04762 7.15122 7.24210 7.98166 8.21537 8.65321 8.86422 9.13673 10.69655 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.018474 B = 0.014215 C = 0.009235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.300867 B = 1969.212072 C = 3031.341341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.118 3.882 3 N -0.592 5.592 4 C 0.197 3.803 5 C -0.537 4.537 6 H 0.087 0.913 7 C 0.089 3.911 8 N -0.872 5.872 9 Si 0.846 3.154 10 H -0.262 1.262 11 H -0.275 1.275 12 H -0.258 1.258 13 C 0.594 3.406 14 O -0.562 6.562 15 C -0.282 4.282 16 C -0.082 4.082 17 C -0.166 4.166 18 C -0.323 4.323 19 S 0.359 5.641 20 H 0.060 0.940 21 H 0.056 0.944 22 H 0.053 0.947 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.050 0.950 26 H 0.031 0.969 27 H 0.271 0.729 28 H 0.138 0.862 29 H 0.122 0.878 30 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.075 2.773 1.452 7.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.005 4.005 3 N -0.322 5.322 4 C 0.073 3.927 5 C -0.578 4.578 6 H 0.105 0.895 7 C -0.118 4.118 8 N -0.507 5.507 9 Si 0.671 3.329 10 H -0.187 1.187 11 H -0.201 1.201 12 H -0.182 1.182 13 C 0.383 3.617 14 O -0.444 6.444 15 C -0.404 4.404 16 C -0.117 4.117 17 C -0.197 4.197 18 C -0.461 4.461 19 S 0.635 5.365 20 H 0.079 0.921 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.099 0.901 24 H 0.093 0.907 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.081 0.919 28 H 0.155 0.845 29 H 0.140 0.860 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.811 2.250 0.315 7.180 hybrid contribution -0.369 1.073 0.719 1.343 sum -7.181 3.323 1.033 7.979 Atomic orbital electron populations 1.22147 0.96687 1.01526 1.02050 1.21291 0.93414 0.82758 1.03015 1.47772 1.63740 1.13659 1.07044 1.20092 0.97896 0.92096 0.82587 1.21406 0.90140 1.38341 1.07958 0.89465 1.24817 0.94840 0.95001 0.97096 1.69864 1.10020 1.43074 1.27746 0.87234 0.81897 0.81442 0.82310 1.18667 1.20052 1.18194 1.16983 0.76752 0.84527 0.83451 1.90702 1.53394 1.69187 1.31122 1.24635 1.16137 0.99419 1.00172 1.20450 1.00200 0.92485 0.98532 1.19680 1.06123 0.97465 0.96399 1.26538 1.09203 1.08262 1.02130 1.85348 1.51065 0.94517 1.05571 0.92071 0.92463 0.92783 0.90089 0.90651 0.93201 0.95244 0.91857 0.84465 0.86011 0.83379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 10.20 37.16 0.38 -2.10 16 2 C 0.12 2.10 6.06 -4.03 -0.02 2.07 16 3 N -0.59 -12.45 2.49 -176.63 -0.44 -12.89 16 4 C 0.20 4.26 3.80 -5.19 -0.02 4.24 16 5 C -0.54 -13.36 7.50 -34.44 -0.26 -13.62 16 6 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 7 C 0.09 2.25 5.08 -17.82 -0.09 2.15 16 8 N -0.87 -23.68 13.96 55.43 0.77 -22.91 16 9 Si 0.85 18.15 26.79 -169.99 -4.55 13.60 16 10 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 11 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 12 H -0.26 -5.21 6.54 56.52 0.37 -4.84 16 13 C 0.59 13.31 7.53 -12.89 -0.10 13.22 16 14 O -0.56 -13.42 16.50 5.19 0.09 -13.33 16 15 C -0.28 -6.01 6.23 -36.79 -0.23 -6.24 16 16 C -0.08 -1.58 10.02 -40.44 -0.41 -1.98 16 17 C -0.17 -2.89 10.15 -41.41 -0.42 -3.31 16 18 C -0.32 -5.80 10.92 29.18 0.32 -5.48 16 19 S 0.36 7.34 15.20 -107.50 -1.63 5.70 16 20 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.08 1.35 8.03 -51.93 -0.42 0.93 16 24 H 0.08 1.37 7.55 -51.93 -0.39 0.98 16 25 H 0.05 1.03 7.07 -51.93 -0.37 0.66 16 26 H 0.03 0.65 3.95 -22.38 -0.09 0.56 16 27 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 28 H 0.14 2.46 8.06 -52.49 -0.42 2.04 16 29 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.15 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 264.75 15.07 3.99 3.99 Total: -1.00 -28.02 264.75 -6.02 -34.04 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -3.39 Total: 2.83 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -0.85 Total: -11.04 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.33 Total: -35.79 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.09 Total: -13.33 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -4.55 Total: 13.60 kcal Atomic # 16 Polarization: 7.34 SS G_CDS: -1.63 Total: 5.70 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.02 -6.02 -34.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454250.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.857 kcal (2) G-P(sol) polarization free energy of solvation -28.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds