Wall clock time and date at job start Sun Mar 29 2020 22:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46506 * 109.46591 * 2 1 4 4 C 1.46494 * 120.00004 * 265.08816 * 3 2 1 5 5 C 1.50705 * 109.47047 * 262.22123 * 4 3 2 6 6 H 1.07996 * 120.00224 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99991 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99964 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99853 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46862 * 89.99920 * 9 7 5 11 11 H 1.48497 * 109.47127 * 209.99762 * 9 7 5 12 12 H 1.48497 * 109.47361 * 329.99803 * 9 7 5 13 13 C 1.34777 * 119.99696 * 85.09415 * 3 2 1 14 14 O 1.21702 * 120.00336 * 1.93332 * 13 3 2 15 15 C 1.46588 * 119.99920 * 181.94198 * 13 3 2 16 16 C 1.36641 * 125.45710 * 172.13937 * 15 13 3 17 17 C 1.37477 * 113.29735 * 179.97438 * 16 15 13 18 18 C 1.33819 * 115.09582 * 359.97438 * 17 16 15 19 19 S 1.70612 * 110.95828 * 0.02562 * 18 17 16 20 20 H 1.09004 * 109.46845 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47517 * 299.99900 * 1 2 3 22 22 H 1.09003 * 109.47071 * 60.00008 * 1 2 3 23 23 H 1.08998 * 109.47051 * 240.00699 * 2 1 3 24 24 H 1.08994 * 109.47348 * 119.99906 * 2 1 3 25 25 H 1.08993 * 109.47544 * 22.22447 * 4 3 2 26 26 H 1.09007 * 109.46882 * 142.22643 * 4 3 2 27 27 H 0.97000 * 119.99700 * 180.02562 * 8 7 5 28 28 H 1.07998 * 123.35273 * 0.26702 * 16 15 13 29 29 H 1.07993 * 122.44894 * 180.02562 * 17 16 15 30 30 H 1.07997 * 124.51882 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3648 2.0357 -1.2640 5 6 3.8538 1.9525 -1.4811 6 1 4.4794 1.4609 -0.7508 7 6 4.4174 2.5030 -2.6127 8 7 5.7167 2.4299 -2.8024 9 14 3.3353 3.3527 -3.8762 10 1 3.2154 4.7933 -3.5365 11 1 3.9429 3.2108 -5.2238 12 1 1.9874 2.7295 -3.8729 13 6 2.1487 2.0499 1.1630 14 8 1.8946 1.4949 2.2158 15 6 2.5966 3.4457 1.1597 16 6 2.6229 4.2722 2.2475 17 6 3.0901 5.5331 1.9611 18 6 3.4355 5.7339 0.6840 19 16 3.1870 4.3241 -0.2443 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.8495 1.5368 -2.0847 26 1 2.0610 3.0819 -1.2267 27 1 6.1132 2.8176 -3.5983 28 1 2.3122 3.9642 3.2349 29 1 3.1732 6.3046 2.7121 30 1 3.8203 6.6642 0.2930 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454250.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:38 Heat of formation + Delta-G solvation = -16.250787 kcal Electronic energy + Delta-G solvation = -15257.370319 eV Core-core repulsion = 12757.956967 eV Total energy + Delta-G solvation = -2499.413352 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.87136 -38.33934 -36.96323 -34.81968 -32.72282 -30.27439 -29.53607 -26.01160 -24.64674 -23.98468 -21.25150 -19.88436 -19.18091 -18.78067 -17.34445 -16.68118 -16.43709 -16.14592 -15.57261 -14.76179 -14.65893 -14.42777 -14.22539 -13.86224 -13.48029 -13.35284 -13.26636 -12.95550 -12.66621 -12.45400 -12.10939 -11.89638 -11.75905 -11.00200 -10.94339 -10.85836 -9.82976 -9.44419 -9.22352 -8.33475 -6.35251 -0.24524 0.82319 1.37225 1.39418 1.42770 1.49240 1.57817 2.17637 2.30435 2.33259 3.01004 3.70433 4.20722 4.27197 4.34520 4.42937 4.53247 4.61231 4.68128 4.72643 4.86881 4.99320 5.16755 5.26685 5.32198 5.39983 5.60251 5.65677 6.11710 6.46211 6.62655 7.13606 7.23833 8.81835 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.018474 B = 0.014215 C = 0.009235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.300867 B = 1969.212072 C = 3031.341341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.108 3.892 3 N -0.595 5.595 4 C 0.202 3.798 5 C -0.534 4.534 6 H 0.035 0.965 7 C 0.048 3.952 8 N -0.924 5.924 9 Si 0.896 3.104 10 H -0.244 1.244 11 H -0.278 1.278 12 H -0.234 1.234 13 C 0.584 3.416 14 O -0.588 6.588 15 C -0.313 4.313 16 C -0.075 4.075 17 C -0.161 4.161 18 C -0.305 4.305 19 S 0.313 5.687 20 H 0.091 0.909 21 H 0.041 0.959 22 H 0.062 0.938 23 H 0.090 0.910 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.273 0.727 28 H 0.148 0.852 29 H 0.161 0.839 30 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.694 4.376 1.174 9.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.014 4.014 3 N -0.324 5.324 4 C 0.078 3.922 5 C -0.576 4.576 6 H 0.053 0.947 7 C -0.154 4.154 8 N -0.561 5.561 9 Si 0.717 3.283 10 H -0.168 1.168 11 H -0.203 1.203 12 H -0.157 1.157 13 C 0.374 3.626 14 O -0.472 6.472 15 C -0.434 4.434 16 C -0.111 4.111 17 C -0.192 4.192 18 C -0.443 4.443 19 S 0.588 5.412 20 H 0.110 0.890 21 H 0.060 0.940 22 H 0.081 0.919 23 H 0.109 0.891 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.165 0.835 29 H 0.178 0.822 30 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -8.453 3.823 0.028 9.277 hybrid contribution 0.186 0.613 0.970 1.162 sum -8.266 4.436 0.997 9.434 Atomic orbital electron populations 1.22047 0.94025 1.03446 1.01656 1.21548 0.95601 0.81276 1.02945 1.47916 1.63266 1.14685 1.06572 1.20022 0.95701 0.93303 0.83216 1.21281 0.91411 1.37913 1.06946 0.94656 1.25483 0.95748 0.95345 0.98853 1.70003 1.12225 1.45089 1.28789 0.86420 0.81124 0.81469 0.79243 1.16809 1.20326 1.15671 1.17288 0.76590 0.85223 0.83492 1.90666 1.54842 1.69931 1.31799 1.24716 1.18055 0.99416 1.01173 1.20815 0.98823 0.92975 0.98456 1.20029 1.04638 0.97402 0.97088 1.26742 1.07866 1.07978 1.01697 1.85256 1.52799 0.96481 1.06661 0.89018 0.93982 0.91901 0.89129 0.91785 0.91575 0.93906 0.91790 0.83459 0.82192 0.80334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.34 10.20 71.98 0.73 -3.60 16 2 C 0.11 3.81 6.06 86.38 0.52 4.34 16 3 N -0.60 -25.09 2.49 -830.96 -2.07 -27.16 16 4 C 0.20 8.59 3.80 85.64 0.32 8.91 16 5 C -0.53 -27.17 7.50 25.60 0.19 -26.98 16 6 H 0.04 2.12 8.06 -2.91 -0.02 2.10 16 7 C 0.05 2.43 5.08 84.66 0.43 2.86 16 8 N -0.92 -51.49 13.96 21.45 0.30 -51.19 16 9 Si 0.90 36.18 26.79 68.60 1.84 38.02 16 10 H -0.24 -9.13 7.11 99.48 0.71 -8.42 16 11 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 12 H -0.23 -8.48 6.54 99.48 0.65 -7.83 16 13 C 0.58 26.45 7.53 86.42 0.65 27.10 16 14 O -0.59 -28.48 16.50 -4.36 -0.07 -28.56 16 15 C -0.31 -13.17 6.23 24.08 0.15 -13.02 16 16 C -0.08 -2.75 10.02 21.72 0.22 -2.54 16 17 C -0.16 -5.06 10.15 21.09 0.21 -4.85 16 18 C -0.31 -9.97 10.92 66.81 0.73 -9.24 16 19 S 0.31 12.46 15.20 -56.49 -0.86 11.60 16 20 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 21 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.09 2.97 8.03 -2.39 -0.02 2.95 16 24 H 0.06 2.37 7.55 -2.39 -0.02 2.36 16 25 H 0.07 2.60 7.07 -2.39 -0.02 2.59 16 26 H 0.04 1.80 3.95 -21.17 -0.08 1.71 16 27 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 28 H 0.15 5.03 8.06 -2.91 -0.02 5.01 16 29 H 0.16 3.84 8.06 -2.91 -0.02 3.81 16 30 H 0.18 4.72 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -61.89 264.75 4.31 -57.58 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 1.00 Total: 16.72 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: 4.17 Total: -17.01 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -1.77 Total: -78.35 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.07 Total: -28.56 kcal Atomic # 14 Polarization: 36.18 SS G_CDS: 1.84 Total: 38.02 kcal Atomic # 16 Polarization: 12.46 SS G_CDS: -0.86 Total: 11.60 kcal Total: -61.89 4.31 -57.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454250.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.329 kcal (2) G-P(sol) polarization free energy of solvation -61.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds