Wall clock time and date at job start Sun Mar 29 2020 22:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46950 * 2 1 4 4 N 1.46502 * 109.47487 * 173.36124 * 3 2 1 5 5 C 1.36972 * 119.99694 * 80.91803 * 4 3 2 6 6 H 1.08005 * 119.99677 * 172.18625 * 5 4 3 7 7 C 1.38970 * 120.00624 * 352.18744 * 5 4 3 8 8 N 1.31419 * 119.99329 * 5.79184 * 7 5 4 9 9 Si 1.86791 * 120.00161 * 185.79305 * 7 5 4 10 10 H 1.48495 * 109.47491 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47122 * 120.00167 * 9 7 5 12 12 H 1.48507 * 109.47237 * 240.00022 * 9 7 5 13 13 C 1.34773 * 120.00106 * 260.92518 * 4 3 2 14 14 O 1.21658 * 120.00149 * 184.64224 * 13 4 3 15 15 C 1.47112 * 119.99719 * 4.63763 * 13 4 3 16 16 C 1.44437 * 123.47365 * 26.52786 * 15 13 4 17 17 C 1.32764 * 113.08991 * 179.97438 * 16 15 13 18 18 S 1.75503 * 110.59062 * 359.77989 * 17 16 15 19 19 C 1.36098 * 123.47017 * 206.50942 * 15 13 4 20 20 H 1.08997 * 109.47374 * 60.00151 * 1 2 3 21 21 H 1.09000 * 109.47074 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47116 * 300.00276 * 1 2 3 23 23 H 1.09000 * 109.47116 * 239.99724 * 2 1 3 24 24 H 1.08995 * 109.46831 * 119.99317 * 2 1 3 25 25 H 1.08999 * 109.47428 * 53.35871 * 3 2 1 26 26 H 1.09004 * 109.46862 * 293.35843 * 3 2 1 27 27 H 0.97009 * 119.99207 * 180.02562 * 8 7 5 28 28 H 1.08003 * 123.45885 * 359.97438 * 16 15 13 29 29 H 1.08002 * 124.70332 * 180.02562 * 17 16 15 30 30 H 1.07999 * 124.59570 * 359.97438 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.4962 1.4457 0.1597 5 6 4.3043 1.2150 -0.9220 6 1 5.3733 1.3412 -0.8341 7 6 3.7486 0.8185 -2.1325 8 7 2.4427 0.7748 -2.2730 9 14 4.8580 0.3477 -3.5597 10 1 6.2783 0.4810 -3.1476 11 1 4.5865 -1.0578 -3.9550 12 1 4.5909 1.2462 -4.7116 13 6 4.0409 1.6756 1.3709 14 8 5.2487 1.7622 1.4882 15 6 3.1748 1.8218 2.5510 16 6 1.8659 1.2204 2.6580 17 6 1.2641 1.4849 3.8115 18 16 2.2878 2.4859 4.8265 19 6 3.5244 2.5374 3.6546 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5137 0.8900 25 1 1.5828 1.9895 0.8246 26 1 1.7769 1.9208 -0.9435 27 1 2.0549 0.4977 -3.1179 28 1 1.4222 0.6174 1.8796 29 1 0.2825 1.1298 4.0885 30 1 4.4605 3.0626 3.7736 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044372618.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:37 Heat of formation + Delta-G solvation = 28.451956 kcal Electronic energy + Delta-G solvation = -15406.421529 eV Core-core repulsion = 12908.946633 eV Total energy + Delta-G solvation = -2497.474896 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.17761 -36.09053 -35.54825 -32.26951 -31.43260 -29.13082 -26.32140 -24.90019 -23.41111 -20.71769 -20.33445 -18.57319 -17.48671 -16.85795 -15.37002 -15.25827 -14.28234 -14.05742 -13.78227 -13.35411 -12.69398 -12.46463 -12.29369 -12.03560 -11.78068 -11.64985 -11.20619 -11.04506 -10.87367 -10.49056 -10.38085 -10.26934 -10.01856 -9.90247 -8.87352 -8.52641 -8.47005 -7.85203 -7.72555 -6.22840 -3.85344 1.39522 2.04656 2.38629 2.71196 3.15838 3.22417 3.30076 4.08296 4.27057 4.94875 5.12128 5.29190 5.65691 5.85079 5.94324 6.00533 6.02798 6.21370 6.42056 6.44387 6.58450 6.66238 6.83050 6.88181 6.92507 7.36403 7.60422 7.75494 8.06220 8.50282 9.13384 9.39504 9.96339 10.59381 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.033750 B = 0.008511 C = 0.006969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.441233 B = 3289.001474 C = 4016.599647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C 0.110 3.890 4 N -0.430 5.430 5 C -0.286 4.286 6 H 0.106 0.894 7 C 0.021 3.979 8 N -0.872 5.872 9 Si 0.933 3.067 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.490 3.510 14 O -0.596 6.596 15 C -0.118 4.118 16 C -0.127 4.127 17 C -0.242 4.242 18 S 0.117 5.883 19 C -0.207 4.207 20 H 0.057 0.943 21 H 0.041 0.959 22 H 0.038 0.962 23 H 0.107 0.893 24 H 0.034 0.966 25 H 0.042 0.958 26 H 0.123 0.877 27 H 0.265 0.735 28 H 0.178 0.822 29 H 0.160 0.840 30 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.623 0.370 6.655 9.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C -0.013 4.013 4 N -0.146 5.146 5 C -0.414 4.414 6 H 0.124 0.876 7 C -0.180 4.180 8 N -0.515 5.515 9 Si 0.760 3.240 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.207 1.207 13 C 0.277 3.723 14 O -0.483 6.483 15 C -0.135 4.135 16 C -0.157 4.157 17 C -0.377 4.377 18 S 0.380 5.620 19 C -0.345 4.345 20 H 0.076 0.924 21 H 0.060 0.940 22 H 0.057 0.943 23 H 0.125 0.875 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.140 0.860 27 H 0.076 0.924 28 H 0.195 0.805 29 H 0.178 0.822 30 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.322 0.976 7.934 10.191 hybrid contribution 0.479 -0.874 -2.098 2.323 sum -5.843 0.102 5.836 8.259 Atomic orbital electron populations 1.21684 0.97363 1.00118 1.00834 1.22234 0.93807 0.98771 1.02279 1.22242 0.79757 0.96814 1.02511 1.43746 1.06300 1.58358 1.06203 1.19940 0.92535 1.41005 0.87946 0.87629 1.25311 0.96426 0.97210 0.99070 1.70099 1.09169 1.46838 1.25352 0.85734 0.80105 0.78107 0.80077 1.19288 1.20610 1.20733 1.17268 0.87113 0.85564 0.82321 1.90606 1.14421 1.57941 1.85338 1.20682 0.95267 1.00802 0.96770 1.22599 0.93794 1.00856 0.98411 1.25364 1.04821 1.08483 0.98993 1.82595 1.08327 1.50840 1.20232 1.25272 1.04612 1.06639 0.97988 0.92402 0.94010 0.94340 0.87526 0.94775 0.94028 0.85976 0.92358 0.80517 0.82225 0.81717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.69 37.16 0.36 -1.98 16 2 C -0.13 -2.72 4.55 -26.73 -0.12 -2.84 16 3 C 0.11 2.47 4.16 -4.04 -0.02 2.45 16 4 N -0.43 -11.17 2.65 -116.13 -0.31 -11.48 16 5 C -0.29 -7.84 9.50 -14.98 -0.14 -7.98 16 6 H 0.11 3.07 7.18 -52.48 -0.38 2.69 16 7 C 0.02 0.52 5.21 -17.46 -0.09 0.43 16 8 N -0.87 -21.16 7.19 55.50 0.40 -20.76 16 9 Si 0.93 20.19 29.56 -169.99 -5.02 15.17 16 10 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 11 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 12 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 13 C 0.49 12.78 7.50 -12.66 -0.09 12.68 16 14 O -0.60 -17.44 16.48 5.23 0.09 -17.36 16 15 C -0.12 -2.55 5.46 -104.63 -0.57 -3.12 16 16 C -0.13 -2.34 7.75 -39.02 -0.30 -2.64 16 17 C -0.24 -3.67 11.12 28.86 0.32 -3.35 16 18 S 0.12 1.69 23.02 -107.50 -2.47 -0.78 16 19 C -0.21 -3.88 10.62 29.96 0.32 -3.56 16 20 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.04 0.56 7.44 -51.93 -0.39 0.18 16 23 H 0.11 2.47 5.71 -51.93 -0.30 2.17 16 24 H 0.03 0.70 6.55 -51.93 -0.34 0.36 16 25 H 0.04 0.87 4.88 -51.93 -0.25 0.62 16 26 H 0.12 2.96 5.83 -51.93 -0.30 2.66 16 27 H 0.27 6.10 8.31 -40.82 -0.34 5.76 16 28 H 0.18 3.23 2.06 -52.48 -0.11 3.12 16 29 H 0.16 1.90 8.06 -52.49 -0.42 1.48 16 30 H 0.17 3.02 8.06 -52.49 -0.42 2.60 16 LS Contribution 256.11 15.07 3.86 3.86 Total: -1.00 -28.93 256.11 -6.69 -35.63 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -2.89 Total: 5.63 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -0.34 Total: -9.92 kcal Atomic # 7 Polarization: -32.33 SS G_CDS: 0.09 Total: -32.23 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: 0.09 Total: -17.36 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.47 Total: -0.78 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.93 -6.69 -35.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044372618.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.078 kcal (2) G-P(sol) polarization free energy of solvation -28.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds