Wall clock time and date at job start Sun Mar 29 2020 22:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46950 * 2 1 4 4 N 1.46502 * 109.47487 * 173.36124 * 3 2 1 5 5 C 1.36972 * 119.99694 * 80.91803 * 4 3 2 6 6 H 1.08005 * 119.99677 * 172.18625 * 5 4 3 7 7 C 1.38970 * 120.00624 * 352.18744 * 5 4 3 8 8 N 1.31419 * 119.99329 * 5.79184 * 7 5 4 9 9 Si 1.86791 * 120.00161 * 185.79305 * 7 5 4 10 10 H 1.48495 * 109.47491 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47122 * 120.00167 * 9 7 5 12 12 H 1.48507 * 109.47237 * 240.00022 * 9 7 5 13 13 C 1.34773 * 120.00106 * 260.92518 * 4 3 2 14 14 O 1.21658 * 120.00149 * 184.64224 * 13 4 3 15 15 C 1.47112 * 119.99719 * 4.63763 * 13 4 3 16 16 C 1.44437 * 123.47365 * 26.52786 * 15 13 4 17 17 C 1.32764 * 113.08991 * 179.97438 * 16 15 13 18 18 S 1.75503 * 110.59062 * 359.77989 * 17 16 15 19 19 C 1.36098 * 123.47017 * 206.50942 * 15 13 4 20 20 H 1.08997 * 109.47374 * 60.00151 * 1 2 3 21 21 H 1.09000 * 109.47074 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47116 * 300.00276 * 1 2 3 23 23 H 1.09000 * 109.47116 * 239.99724 * 2 1 3 24 24 H 1.08995 * 109.46831 * 119.99317 * 2 1 3 25 25 H 1.08999 * 109.47428 * 53.35871 * 3 2 1 26 26 H 1.09004 * 109.46862 * 293.35843 * 3 2 1 27 27 H 0.97009 * 119.99207 * 180.02562 * 8 7 5 28 28 H 1.08003 * 123.45885 * 359.97438 * 16 15 13 29 29 H 1.08002 * 124.70332 * 180.02562 * 17 16 15 30 30 H 1.07999 * 124.59570 * 359.97438 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.4962 1.4457 0.1597 5 6 4.3043 1.2150 -0.9220 6 1 5.3733 1.3412 -0.8341 7 6 3.7486 0.8185 -2.1325 8 7 2.4427 0.7748 -2.2730 9 14 4.8580 0.3477 -3.5597 10 1 6.2783 0.4810 -3.1476 11 1 4.5865 -1.0578 -3.9550 12 1 4.5909 1.2462 -4.7116 13 6 4.0409 1.6756 1.3709 14 8 5.2487 1.7622 1.4882 15 6 3.1748 1.8218 2.5510 16 6 1.8659 1.2204 2.6580 17 6 1.2641 1.4849 3.8115 18 16 2.2878 2.4859 4.8265 19 6 3.5244 2.5374 3.6546 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5137 0.8900 25 1 1.5828 1.9895 0.8246 26 1 1.7769 1.9208 -0.9435 27 1 2.0549 0.4977 -3.1179 28 1 1.4222 0.6174 1.8796 29 1 0.2825 1.1298 4.0885 30 1 4.4605 3.0626 3.7736 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044372618.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:36 Heat of formation + Delta-G solvation = 10.957478 kcal Electronic energy + Delta-G solvation = -15407.180146 eV Core-core repulsion = 12908.946633 eV Total energy + Delta-G solvation = -2498.233513 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.96273 -37.64510 -37.46936 -34.01077 -33.33625 -30.53859 -28.10959 -26.60303 -25.05779 -22.33303 -21.89815 -20.24947 -19.08498 -18.65965 -17.18505 -16.82462 -16.02296 -15.84590 -15.61149 -15.04608 -14.14510 -13.90769 -13.76908 -13.65984 -13.48439 -13.11935 -12.90800 -12.77116 -12.44824 -12.19615 -12.13550 -11.94201 -11.61807 -11.56432 -10.71752 -10.48800 -9.90232 -9.62389 -9.16212 -8.16540 -5.89662 -0.02545 0.77289 1.04856 1.18525 1.41453 1.44805 1.54846 2.26386 2.41443 3.12759 3.16893 3.97037 4.10836 4.36994 4.53435 4.56986 4.61091 4.68836 4.91179 5.04003 5.10385 5.23153 5.30938 5.37411 5.43887 5.51200 5.70044 6.01181 6.09349 6.54750 7.13976 7.44833 8.00896 8.62242 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.033750 B = 0.008511 C = 0.006969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.441233 B = 3289.001474 C = 4016.599647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.123 4.123 3 C 0.115 3.885 4 N -0.438 5.438 5 C -0.339 4.339 6 H 0.071 0.929 7 C 0.001 3.999 8 N -0.864 5.864 9 Si 0.993 3.007 10 H -0.283 1.283 11 H -0.267 1.267 12 H -0.268 1.268 13 C 0.469 3.531 14 O -0.651 6.651 15 C -0.156 4.156 16 C -0.154 4.154 17 C -0.224 4.224 18 S 0.224 5.776 19 C -0.227 4.227 20 H 0.053 0.947 21 H 0.060 0.940 22 H 0.062 0.938 23 H 0.076 0.924 24 H 0.030 0.970 25 H 0.061 0.939 26 H 0.102 0.898 27 H 0.274 0.726 28 H 0.175 0.825 29 H 0.204 0.796 30 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.464 0.056 7.881 12.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.161 4.161 3 C -0.008 4.008 4 N -0.153 5.153 5 C -0.467 4.467 6 H 0.089 0.911 7 C -0.201 4.201 8 N -0.504 5.504 9 Si 0.816 3.184 10 H -0.208 1.208 11 H -0.192 1.192 12 H -0.193 1.193 13 C 0.259 3.741 14 O -0.542 6.542 15 C -0.174 4.174 16 C -0.183 4.183 17 C -0.358 4.358 18 S 0.489 5.511 19 C -0.365 4.365 20 H 0.072 0.928 21 H 0.079 0.921 22 H 0.081 0.919 23 H 0.094 0.906 24 H 0.049 0.951 25 H 0.079 0.921 26 H 0.120 0.880 27 H 0.085 0.915 28 H 0.191 0.809 29 H 0.221 0.779 30 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.238 0.662 9.156 13.024 hybrid contribution 1.308 -0.722 -2.361 2.794 sum -7.930 -0.059 6.795 10.443 Atomic orbital electron populations 1.21597 0.93833 1.01722 1.01829 1.22024 0.96741 0.96752 1.00563 1.22280 0.78029 0.98335 1.02107 1.43978 1.07572 1.57771 1.05987 1.19771 0.91669 1.45311 0.89980 0.91097 1.25949 0.97974 0.95982 1.00225 1.70203 1.09494 1.44600 1.26084 0.84885 0.77633 0.78506 0.77327 1.20835 1.19193 1.19261 1.18108 0.87305 0.84982 0.83754 1.90527 1.16861 1.60415 1.86420 1.20491 0.96814 1.04154 0.95891 1.22379 0.92917 1.02652 1.00325 1.25910 1.06059 1.06344 0.97506 1.82245 1.04507 1.47988 1.16384 1.25555 1.06143 1.05719 0.99118 0.92766 0.92099 0.91943 0.90551 0.95117 0.92118 0.88021 0.91507 0.80851 0.77894 0.82563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 9.69 71.98 0.70 -3.32 16 2 C -0.12 -4.98 4.55 30.59 0.14 -4.84 16 3 C 0.11 5.23 4.16 86.38 0.36 5.59 16 4 N -0.44 -24.00 2.65 -639.57 -1.69 -25.70 16 5 C -0.34 -19.78 9.50 84.07 0.80 -18.98 16 6 H 0.07 4.51 7.18 -2.91 -0.02 4.49 16 7 C 0.00 0.03 5.21 84.93 0.44 0.47 16 8 N -0.86 -42.19 7.19 21.67 0.16 -42.03 16 9 Si 0.99 42.16 29.56 68.60 2.03 44.19 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 12 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 13 C 0.47 25.97 7.50 86.57 0.65 26.62 16 14 O -0.65 -41.12 16.48 -4.22 -0.07 -41.19 16 15 C -0.16 -6.80 5.46 -19.87 -0.11 -6.91 16 16 C -0.15 -5.39 7.75 22.67 0.18 -5.22 16 17 C -0.22 -5.77 11.12 66.64 0.74 -5.03 16 18 S 0.22 5.59 23.02 -56.49 -1.30 4.29 16 19 C -0.23 -8.38 10.62 67.32 0.71 -7.67 16 20 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 21 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.06 1.61 7.44 -2.39 -0.02 1.59 16 23 H 0.08 3.56 5.71 -2.39 -0.01 3.55 16 24 H 0.03 1.26 6.55 -2.39 -0.02 1.24 16 25 H 0.06 2.53 4.88 -2.39 -0.01 2.52 16 26 H 0.10 5.03 5.83 -2.38 -0.01 5.01 16 27 H 0.27 12.38 8.31 -92.70 -0.77 11.61 16 28 H 0.17 6.06 2.06 -2.91 -0.01 6.05 16 29 H 0.20 3.46 8.06 -2.91 -0.02 3.44 16 30 H 0.16 5.88 8.06 -2.91 -0.02 5.86 16 Total: -1.00 -68.05 256.11 4.90 -63.15 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 1.17 Total: 16.57 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: 4.61 Total: -19.28 kcal Atomic # 7 Polarization: -66.19 SS G_CDS: -1.54 Total: -67.73 kcal Atomic # 8 Polarization: -41.12 SS G_CDS: -0.07 Total: -41.19 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: 5.59 SS G_CDS: -1.30 Total: 4.29 kcal Total: -68.05 4.90 -63.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044372618.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.109 kcal (2) G-P(sol) polarization free energy of solvation -68.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds