Wall clock time and date at job start Sun Mar 29 2020 22:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46957 * 2 1 4 4 N 1.46499 * 109.47125 * 179.97438 * 3 2 1 5 5 C 1.36892 * 119.99870 * 267.65766 * 4 3 2 6 6 H 1.08001 * 119.99530 * 140.91428 * 5 4 3 7 7 C 1.39004 * 119.99817 * 320.63647 * 5 4 3 8 8 N 1.31395 * 120.00445 * 352.12100 * 7 5 4 9 9 Si 1.86799 * 119.99687 * 172.11729 * 7 5 4 10 10 H 1.48502 * 109.47250 * 90.00212 * 9 7 5 11 11 H 1.48504 * 109.47223 * 210.00299 * 9 7 5 12 12 H 1.48501 * 109.47344 * 330.00219 * 9 7 5 13 13 C 1.34777 * 120.00049 * 87.65648 * 4 3 2 14 14 O 1.21749 * 119.99572 * 174.22234 * 13 4 3 15 15 C 1.46447 * 120.00048 * 354.22313 * 13 4 3 16 16 C 1.36766 * 125.46271 * 172.81466 * 15 13 4 17 17 C 1.37449 * 113.28021 * 179.97438 * 16 15 13 18 18 C 1.33845 * 115.10567 * 0.02562 * 17 16 15 19 19 S 1.70615 * 110.97201 * 359.74934 * 18 17 16 20 20 H 1.08998 * 109.47346 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47594 * 300.00662 * 1 2 3 22 22 H 1.09002 * 109.47041 * 59.99904 * 1 2 3 23 23 H 1.08996 * 109.46910 * 239.99940 * 2 1 3 24 24 H 1.08998 * 109.46449 * 119.99680 * 2 1 3 25 25 H 1.09006 * 109.47296 * 59.99661 * 3 2 1 26 26 H 1.09002 * 109.47323 * 299.99923 * 3 2 1 27 27 H 0.96993 * 120.00388 * 180.02562 * 8 7 5 28 28 H 1.07996 * 123.36261 * 359.94302 * 16 15 13 29 29 H 1.08000 * 122.44584 * 180.02562 * 17 16 15 30 30 H 1.08008 * 124.51667 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1889 1.4912 1.1854 6 1 5.0876 0.9063 1.3145 7 6 3.7299 2.2978 2.2203 8 7 2.7335 3.1289 2.0130 9 14 4.5295 2.2001 3.9056 10 1 5.6507 3.1712 3.9786 11 1 3.5248 2.5248 4.9498 12 1 5.0488 0.8268 4.1283 13 6 4.1793 1.3946 -1.1653 14 8 5.3922 1.5006 -1.1717 15 6 3.4532 1.2151 -2.4244 16 6 4.0026 1.2890 -3.6747 17 6 3.0911 1.0792 -4.6818 18 6 1.8386 0.8423 -4.2739 19 16 1.7366 0.8637 -2.5709 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8932 -0.5138 0.8900 25 1 1.6766 1.9564 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 2.4134 3.6920 2.7350 28 1 5.0482 1.4923 -3.8529 29 1 3.3656 1.1038 -5.7261 30 1 1.0042 0.6581 -4.9346 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044373078.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:35 Heat of formation + Delta-G solvation = 3.438217 kcal Electronic energy + Delta-G solvation = -15271.752072 eV Core-core repulsion = 12773.192499 eV Total energy + Delta-G solvation = -2498.559573 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.73153 -36.99251 -35.19213 -32.96241 -31.30118 -29.12967 -26.08037 -25.11601 -23.56683 -21.17659 -20.42574 -18.40014 -17.38367 -16.78969 -15.55926 -15.10303 -14.73518 -14.12331 -13.88440 -13.85868 -12.88217 -12.57681 -12.32568 -12.18380 -11.83559 -11.67250 -11.33208 -11.27086 -11.01803 -10.76047 -10.40737 -10.38419 -10.14624 -9.91545 -9.08816 -8.62689 -8.22338 -7.74567 -7.53540 -6.35887 -4.10552 1.20426 2.17179 2.60141 3.02048 3.17694 3.22542 3.26066 4.05639 4.29199 4.76374 5.00688 5.42161 5.54587 5.61375 5.70109 5.86991 5.98912 6.03093 6.13961 6.35010 6.41042 6.52574 6.57736 6.77591 6.90093 6.92833 7.26966 7.53218 8.17817 8.43343 9.07281 9.25908 9.88519 10.62353 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.031743 B = 0.009340 C = 0.007692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.868580 B = 2996.995411 C = 3639.367093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.149 4.149 3 C 0.076 3.924 4 N -0.430 5.430 5 C -0.294 4.294 6 H 0.093 0.907 7 C 0.034 3.966 8 N -0.874 5.874 9 Si 0.929 3.071 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.518 3.482 14 O -0.572 6.572 15 C -0.226 4.226 16 C -0.099 4.099 17 C -0.145 4.145 18 C -0.309 4.309 19 S 0.239 5.761 20 H 0.050 0.950 21 H 0.057 0.943 22 H 0.051 0.949 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.140 0.860 26 H 0.057 0.943 27 H 0.271 0.729 28 H 0.143 0.857 29 H 0.127 0.873 30 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.031 -4.252 -5.683 9.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.189 4.189 3 C -0.050 4.050 4 N -0.147 5.147 5 C -0.423 4.423 6 H 0.111 0.889 7 C -0.170 4.170 8 N -0.513 5.513 9 Si 0.755 3.245 10 H -0.201 1.201 11 H -0.207 1.207 12 H -0.193 1.193 13 C 0.306 3.694 14 O -0.456 6.456 15 C -0.347 4.347 16 C -0.132 4.132 17 C -0.177 4.177 18 C -0.445 4.445 19 S 0.507 5.493 20 H 0.069 0.931 21 H 0.076 0.924 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.157 0.843 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.161 0.839 29 H 0.145 0.855 30 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.727 -4.269 -4.563 9.938 hybrid contribution 1.338 0.290 -0.565 1.481 sum -6.390 -3.980 -5.129 9.109 Atomic orbital electron populations 1.21696 0.95775 1.00990 1.01672 1.22155 0.95605 0.99136 1.01969 1.22275 0.82366 0.95322 1.04990 1.43387 1.04698 1.62258 1.04339 1.19521 1.09984 1.24398 0.88356 0.88902 1.25522 0.96720 0.93961 1.00748 1.69589 1.26082 1.22149 1.33460 0.85883 0.78864 0.79060 0.80663 1.20095 1.20694 1.19286 1.17206 0.87226 0.82944 0.82001 1.90658 1.13356 1.55490 1.86139 1.25228 0.97401 1.13084 0.99028 1.20605 1.00924 1.01362 0.90284 1.19838 0.92458 1.05356 1.00018 1.25934 1.01567 1.11387 1.05641 1.84180 1.06034 1.63736 0.95321 0.93084 0.92415 0.92981 0.92237 0.91071 0.84265 0.92558 0.91820 0.83934 0.85530 0.83129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.72 37.16 0.36 -1.69 16 2 C -0.15 -2.71 5.21 -26.73 -0.14 -2.85 16 3 C 0.08 1.66 4.47 -4.04 -0.02 1.65 16 4 N -0.43 -11.13 2.53 -116.37 -0.29 -11.42 16 5 C -0.29 -8.09 8.91 -15.01 -0.13 -8.22 16 6 H 0.09 2.63 7.78 -52.49 -0.41 2.23 16 7 C 0.03 0.88 5.24 -17.45 -0.09 0.79 16 8 N -0.87 -22.88 10.83 55.50 0.60 -22.28 16 9 Si 0.93 20.31 29.56 -169.99 -5.02 15.29 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 12 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 13 C 0.52 13.56 7.57 -12.95 -0.10 13.46 16 14 O -0.57 -16.82 16.78 5.14 0.09 -16.73 16 15 C -0.23 -4.88 6.18 -36.81 -0.23 -5.11 16 16 C -0.10 -1.91 10.02 -40.40 -0.40 -2.32 16 17 C -0.15 -2.33 10.15 -41.41 -0.42 -2.75 16 18 C -0.31 -4.69 10.92 29.19 0.32 -4.37 16 19 S 0.24 4.05 14.03 -107.50 -1.51 2.54 16 20 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.05 0.69 7.17 -51.93 -0.37 0.31 16 23 H 0.06 1.07 5.69 -34.80 -0.20 0.87 16 24 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 25 H 0.14 3.33 5.13 -51.93 -0.27 3.06 16 26 H 0.06 1.18 4.78 -24.85 -0.12 1.06 16 27 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 28 H 0.14 2.70 8.06 -52.49 -0.42 2.28 16 29 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 30 H 0.15 1.84 8.06 -52.48 -0.42 1.41 16 LS Contribution 260.88 15.07 3.93 3.93 Total: -1.00 -30.30 260.88 -6.10 -36.39 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -3.04 Total: 3.70 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -0.85 Total: -11.42 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.31 Total: -33.71 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: 0.09 Total: -16.73 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -1.51 Total: 2.54 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.30 -6.10 -36.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044373078.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.832 kcal (2) G-P(sol) polarization free energy of solvation -30.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds