Wall clock time and date at job start Sun Mar 29 2020 22:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46957 * 2 1 4 4 N 1.46499 * 109.47125 * 179.97438 * 3 2 1 5 5 C 1.36892 * 119.99870 * 267.65766 * 4 3 2 6 6 H 1.08001 * 119.99530 * 140.91428 * 5 4 3 7 7 C 1.39004 * 119.99817 * 320.63647 * 5 4 3 8 8 N 1.31395 * 120.00445 * 352.12100 * 7 5 4 9 9 Si 1.86799 * 119.99687 * 172.11729 * 7 5 4 10 10 H 1.48502 * 109.47250 * 90.00212 * 9 7 5 11 11 H 1.48504 * 109.47223 * 210.00299 * 9 7 5 12 12 H 1.48501 * 109.47344 * 330.00219 * 9 7 5 13 13 C 1.34777 * 120.00049 * 87.65648 * 4 3 2 14 14 O 1.21749 * 119.99572 * 174.22234 * 13 4 3 15 15 C 1.46447 * 120.00048 * 354.22313 * 13 4 3 16 16 C 1.36766 * 125.46271 * 172.81466 * 15 13 4 17 17 C 1.37449 * 113.28021 * 179.97438 * 16 15 13 18 18 C 1.33845 * 115.10567 * 0.02562 * 17 16 15 19 19 S 1.70615 * 110.97201 * 359.74934 * 18 17 16 20 20 H 1.08998 * 109.47346 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47594 * 300.00662 * 1 2 3 22 22 H 1.09002 * 109.47041 * 59.99904 * 1 2 3 23 23 H 1.08996 * 109.46910 * 239.99940 * 2 1 3 24 24 H 1.08998 * 109.46449 * 119.99680 * 2 1 3 25 25 H 1.09006 * 109.47296 * 59.99661 * 3 2 1 26 26 H 1.09002 * 109.47323 * 299.99923 * 3 2 1 27 27 H 0.96993 * 120.00388 * 180.02562 * 8 7 5 28 28 H 1.07996 * 123.36261 * 359.94302 * 16 15 13 29 29 H 1.08000 * 122.44584 * 180.02562 * 17 16 15 30 30 H 1.08008 * 124.51667 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1889 1.4912 1.1854 6 1 5.0876 0.9063 1.3145 7 6 3.7299 2.2978 2.2203 8 7 2.7335 3.1289 2.0130 9 14 4.5295 2.2001 3.9056 10 1 5.6507 3.1712 3.9786 11 1 3.5248 2.5248 4.9498 12 1 5.0488 0.8268 4.1283 13 6 4.1793 1.3946 -1.1653 14 8 5.3922 1.5006 -1.1717 15 6 3.4532 1.2151 -2.4244 16 6 4.0026 1.2890 -3.6747 17 6 3.0911 1.0792 -4.6818 18 6 1.8386 0.8423 -4.2739 19 16 1.7366 0.8637 -2.5709 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8932 -0.5138 0.8900 25 1 1.6766 1.9564 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 2.4134 3.6920 2.7350 28 1 5.0482 1.4923 -3.8529 29 1 3.3656 1.1038 -5.7261 30 1 1.0042 0.6581 -4.9346 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044373078.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:35 Heat of formation + Delta-G solvation = -15.615064 kcal Electronic energy + Delta-G solvation = -15272.578284 eV Core-core repulsion = 12773.192499 eV Total energy + Delta-G solvation = -2499.385785 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.60374 -38.45775 -37.06140 -34.71248 -33.12093 -30.66670 -27.81126 -26.75568 -25.16243 -22.70251 -22.06612 -19.88062 -19.20950 -18.62975 -17.31171 -16.68324 -16.40198 -15.80406 -15.68125 -15.48736 -14.39015 -14.22963 -13.84500 -13.55276 -13.37838 -13.21534 -13.11197 -12.98558 -12.61190 -12.33946 -12.09575 -12.01729 -11.67551 -11.37416 -10.96652 -10.65144 -9.76919 -9.46621 -9.11743 -8.32859 -6.18987 -0.26517 0.71179 1.25361 1.37921 1.40326 1.52716 1.64296 2.23816 2.41283 2.95937 3.04618 3.94434 4.12663 4.25905 4.29525 4.52111 4.54904 4.66641 4.69485 4.95877 5.13707 5.16730 5.28455 5.34516 5.37445 5.48000 5.55129 5.62840 6.17212 6.47171 7.06276 7.30313 7.91293 8.63301 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.031743 B = 0.009340 C = 0.007692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.868580 B = 2996.995411 C = 3639.367093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.141 4.141 3 C 0.076 3.924 4 N -0.442 5.442 5 C -0.335 4.335 6 H 0.067 0.933 7 C 0.002 3.998 8 N -0.890 5.890 9 Si 0.992 3.008 10 H -0.279 1.279 11 H -0.262 1.262 12 H -0.266 1.266 13 C 0.503 3.497 14 O -0.628 6.628 15 C -0.291 4.291 16 C -0.090 4.090 17 C -0.155 4.155 18 C -0.277 4.277 19 S 0.279 5.721 20 H 0.077 0.923 21 H 0.056 0.944 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.053 0.947 25 H 0.120 0.880 26 H 0.067 0.933 27 H 0.278 0.722 28 H 0.132 0.868 29 H 0.163 0.837 30 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.614 -4.836 -6.987 12.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.181 4.181 3 C -0.049 4.049 4 N -0.158 5.158 5 C -0.463 4.463 6 H 0.085 0.915 7 C -0.200 4.200 8 N -0.528 5.528 9 Si 0.815 3.185 10 H -0.205 1.205 11 H -0.186 1.186 12 H -0.191 1.191 13 C 0.293 3.707 14 O -0.517 6.517 15 C -0.411 4.411 16 C -0.124 4.124 17 C -0.185 4.185 18 C -0.414 4.414 19 S 0.548 5.452 20 H 0.096 0.904 21 H 0.075 0.925 22 H 0.086 0.914 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.138 0.862 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.150 0.850 29 H 0.181 0.819 30 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -10.371 -4.856 -5.857 12.863 hybrid contribution 2.089 0.478 -0.323 2.167 sum -8.282 -4.378 -6.180 11.223 Atomic orbital electron populations 1.21673 0.92300 1.03024 1.02420 1.22080 0.98445 0.96222 1.01326 1.22384 0.80151 0.97756 1.04559 1.43640 1.06263 1.62018 1.03923 1.19495 1.10502 1.26123 0.90192 0.91521 1.26269 0.96985 0.93040 1.03714 1.69683 1.26396 1.22061 1.34676 0.84966 0.78123 0.78869 0.76579 1.20505 1.18569 1.19052 1.17912 0.87081 0.82001 0.83684 1.90577 1.15765 1.57996 1.87399 1.24904 1.00725 1.18021 0.97463 1.20877 1.01340 0.99568 0.90636 1.20054 0.92006 1.05511 1.00904 1.26438 1.02484 1.07530 1.04921 1.83759 1.01889 1.62677 0.96877 0.90392 0.92507 0.91406 0.91875 0.92843 0.86225 0.91559 0.91155 0.84975 0.81930 0.78627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.72 71.98 0.70 -2.85 16 2 C -0.14 -5.06 5.21 30.59 0.16 -4.91 16 3 C 0.08 3.37 4.47 86.38 0.39 3.76 16 4 N -0.44 -24.02 2.53 -640.28 -1.62 -25.64 16 5 C -0.33 -19.46 8.91 84.09 0.75 -18.71 16 6 H 0.07 4.09 7.78 -2.91 -0.02 4.07 16 7 C 0.00 0.10 5.24 84.94 0.44 0.55 16 8 N -0.89 -47.40 10.83 21.67 0.23 -47.17 16 9 Si 0.99 42.46 29.56 68.60 2.03 44.48 16 10 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 12 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 13 C 0.50 27.76 7.57 86.38 0.65 28.41 16 14 O -0.63 -39.64 16.78 -4.51 -0.08 -39.72 16 15 C -0.29 -12.66 6.18 24.06 0.15 -12.51 16 16 C -0.09 -3.42 10.02 21.74 0.22 -3.20 16 17 C -0.15 -4.40 10.15 21.08 0.21 -4.19 16 18 C -0.28 -7.03 10.92 66.82 0.73 -6.30 16 19 S 0.28 8.75 14.03 -56.49 -0.79 7.95 16 20 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 21 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 22 H 0.07 1.54 7.17 -2.39 -0.02 1.53 16 23 H 0.06 2.21 5.69 -13.28 -0.08 2.13 16 24 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.12 5.83 5.13 -2.38 -0.01 5.82 16 26 H 0.07 2.77 4.78 -19.61 -0.09 2.67 16 27 H 0.28 13.68 8.31 -92.71 -0.77 12.90 16 28 H 0.13 5.16 8.06 -2.91 -0.02 5.13 16 29 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 30 H 0.20 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -70.48 260.88 5.18 -65.30 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 1.00 Total: 14.73 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: 4.40 Total: -19.95 kcal Atomic # 7 Polarization: -71.42 SS G_CDS: -1.39 Total: -72.80 kcal Atomic # 8 Polarization: -39.64 SS G_CDS: -0.08 Total: -39.72 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: 8.75 SS G_CDS: -0.79 Total: 7.95 kcal Total: -70.48 5.18 -65.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044373078.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.689 kcal (2) G-P(sol) polarization free energy of solvation -70.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds