Wall clock time and date at job start Sun Mar 29 2020 22:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 6 6 C 1.34776 * 120.00080 * 275.00208 * 5 3 2 7 7 O 1.21686 * 120.00255 * 0.02562 * 6 5 3 8 8 C 1.46381 * 119.99989 * 180.02562 * 6 5 3 9 9 H 1.08003 * 119.99966 * 359.97438 * 8 6 5 10 10 C 1.40040 * 119.99934 * 180.02562 * 8 6 5 11 11 N 1.30675 * 120.00206 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 119.99922 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47518 * 59.99618 * 12 10 8 14 14 H 1.48505 * 109.47011 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47198 * 299.99583 * 12 10 8 16 16 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 17 17 C 1.33384 * 125.20199 * 99.71416 * 16 3 2 18 18 C 1.38429 * 114.91829 * 179.86450 * 17 16 3 19 19 C 1.33388 * 114.92264 * 0.43408 * 18 17 16 20 20 S 1.75883 * 109.59217 * 359.77010 * 19 18 17 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 25 25 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 26 26 H 0.97001 * 119.99703 * 95.00546 * 5 3 2 27 27 H 0.96999 * 120.00194 * 180.02562 * 11 10 8 28 28 H 1.07999 * 122.54124 * 0.02713 * 17 16 3 29 29 H 1.08004 * 122.54141 * 180.19951 * 18 17 16 30 30 H 1.07999 * 125.20796 * 179.74883 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6525 2.0974 1.2518 6 6 0.4352 2.6643 1.3670 7 8 -0.3422 2.6318 0.4313 8 6 0.0482 3.3193 2.6176 9 1 0.7379 3.3478 3.4482 10 6 -1.2169 3.9079 2.7374 11 7 -2.0516 3.8729 1.7326 12 14 -1.7110 4.7430 4.3336 13 1 -0.7694 5.8542 4.6231 14 1 -3.0883 5.2830 4.2039 15 1 -1.6681 3.7562 5.4425 16 6 3.5419 1.4443 -0.1238 17 6 4.2202 1.6603 -1.2519 18 6 5.5976 1.6161 -1.1218 19 6 6.0378 1.3553 0.1101 20 16 4.6685 1.1542 1.1954 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 2.2720 2.1231 1.9978 27 1 -2.9277 4.2809 1.8155 28 1 3.7318 1.8574 -2.1947 29 1 6.2654 1.7768 -1.9553 30 1 7.0761 1.2789 0.3971 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044388595.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:12 Heat of formation + Delta-G solvation = -14.795014 kcal Electronic energy + Delta-G solvation = -14802.421270 eV Core-core repulsion = 12303.071044 eV Total energy + Delta-G solvation = -2499.350225 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.40565 -37.12837 -34.45375 -32.38951 -31.04323 -29.53834 -26.51802 -25.08163 -22.92931 -21.00569 -19.72874 -18.90016 -17.54202 -16.49168 -15.47846 -15.10390 -14.71312 -14.04806 -13.97782 -13.04948 -12.85015 -12.51103 -12.40659 -12.14690 -11.88603 -11.37663 -11.18442 -10.96620 -10.87295 -10.71051 -10.48338 -10.37826 -10.24399 -10.03884 -8.84685 -8.46901 -8.29231 -7.60636 -7.48474 -6.18455 -4.64081 1.19370 1.81521 2.21297 2.92026 3.16223 3.21260 3.23038 4.10936 4.58282 4.79186 5.07194 5.17682 5.60258 5.62634 5.71891 5.80240 5.94491 6.09112 6.23850 6.38794 6.43813 6.56900 6.60862 6.67684 6.92065 7.35849 7.43604 7.88914 8.06948 8.31663 9.02628 9.50188 10.59227 10.77551 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.033298 B = 0.006771 C = 0.006102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.683239 B = 4134.170993 C = 4587.791676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 C 0.220 3.780 4 H 0.094 0.906 5 N -0.760 5.760 6 C 0.558 3.442 7 O -0.571 6.571 8 C -0.546 4.546 9 H 0.066 0.934 10 C 0.090 3.910 11 N -0.767 5.767 12 Si 0.906 3.094 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.268 1.268 16 C -0.155 4.155 17 C -0.150 4.150 18 C -0.129 4.129 19 C -0.230 4.230 20 S 0.102 5.898 21 H 0.057 0.943 22 H 0.077 0.923 23 H 0.031 0.969 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.378 0.622 27 H 0.268 0.732 28 H 0.139 0.861 29 H 0.135 0.865 30 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.009 -5.228 -1.885 13.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C 0.111 3.889 4 H 0.112 0.888 5 N -0.416 5.416 6 C 0.362 3.638 7 O -0.453 6.453 8 C -0.583 4.583 9 H 0.084 0.916 10 C -0.130 4.130 11 N -0.395 5.395 12 Si 0.731 3.269 13 H -0.193 1.193 14 H -0.206 1.206 15 H -0.193 1.193 16 C -0.273 4.273 17 C -0.180 4.180 18 C -0.160 4.160 19 C -0.366 4.366 20 S 0.365 5.635 21 H 0.076 0.924 22 H 0.096 0.904 23 H 0.050 0.950 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.210 0.790 27 H 0.079 0.921 28 H 0.156 0.844 29 H 0.153 0.847 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 11.087 -5.505 -1.121 12.429 hybrid contribution 0.420 0.746 -0.366 0.931 sum 11.507 -4.759 -1.487 12.540 Atomic orbital electron populations 1.21779 0.93957 0.99193 1.04778 1.21938 0.97757 0.95781 1.00644 1.19127 0.84206 0.93754 0.91773 0.88832 1.46343 1.19162 1.62856 1.13233 1.18124 0.78738 0.77737 0.89170 1.90608 1.50829 1.62602 1.41288 1.20847 1.00716 1.38079 0.98650 0.91608 1.25663 0.95903 0.94533 0.96928 1.69999 1.05975 1.33698 1.29866 0.86465 0.77958 0.79966 0.82560 1.19327 1.20568 1.19300 1.25078 0.99952 1.06150 0.96161 1.20096 0.93448 1.05398 0.99082 1.20113 0.95291 1.03265 0.97349 1.25563 1.02236 1.11557 0.97238 1.84248 0.96312 1.69985 1.12991 0.92428 0.90425 0.94979 0.92694 0.92684 0.79021 0.92081 0.84351 0.84685 0.82324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.51 37.16 0.32 -2.56 16 2 C -0.12 -2.20 5.59 -26.74 -0.15 -2.35 16 3 C 0.22 4.27 2.68 -69.08 -0.19 4.09 16 4 H 0.09 2.03 7.56 -51.93 -0.39 1.63 16 5 N -0.76 -16.99 5.01 -56.35 -0.28 -17.27 16 6 C 0.56 15.35 6.31 -12.98 -0.08 15.27 16 7 O -0.57 -17.35 12.15 5.20 0.06 -17.28 16 8 C -0.55 -15.25 9.54 -35.63 -0.34 -15.59 16 9 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 10 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 11 N -0.77 -22.56 11.83 55.55 0.66 -21.90 16 12 Si 0.91 20.07 29.56 -169.99 -5.02 15.05 16 13 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 14 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 15 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 16 C -0.16 -2.54 5.45 -36.00 -0.20 -2.74 16 17 C -0.15 -2.19 10.04 -41.21 -0.41 -2.60 16 18 C -0.13 -1.62 10.18 -41.21 -0.42 -2.04 16 19 C -0.23 -2.82 11.23 29.04 0.33 -2.49 16 20 S 0.10 1.45 22.31 -107.50 -2.40 -0.95 16 21 H 0.06 1.25 7.84 -51.93 -0.41 0.84 16 22 H 0.08 1.91 5.64 -51.93 -0.29 1.62 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.38 7.78 7.66 -40.82 -0.31 7.47 16 27 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 28 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 29 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 30 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 270.65 15.07 4.08 4.08 Total: -1.00 -31.49 270.65 -7.63 -39.12 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -3.49 Total: 7.79 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -1.24 Total: -8.63 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.37 Total: -39.17 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: 0.06 Total: -17.28 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.40 Total: -0.95 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.49 -7.63 -39.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044388595.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.326 kcal (2) G-P(sol) polarization free energy of solvation -31.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds