Wall clock time and date at job start Sun Mar 29 2020 22:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 6 6 C 1.34776 * 120.00080 * 275.00208 * 5 3 2 7 7 O 1.21686 * 120.00255 * 0.02562 * 6 5 3 8 8 C 1.46381 * 119.99989 * 180.02562 * 6 5 3 9 9 H 1.08003 * 119.99966 * 359.97438 * 8 6 5 10 10 C 1.40040 * 119.99934 * 180.02562 * 8 6 5 11 11 N 1.30675 * 120.00206 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 119.99922 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47518 * 59.99618 * 12 10 8 14 14 H 1.48505 * 109.47011 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47198 * 299.99583 * 12 10 8 16 16 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 17 17 C 1.33384 * 125.20199 * 99.71416 * 16 3 2 18 18 C 1.38429 * 114.91829 * 179.86450 * 17 16 3 19 19 C 1.33388 * 114.92264 * 0.43408 * 18 17 16 20 20 S 1.75883 * 109.59217 * 359.77010 * 19 18 17 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 25 25 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 26 26 H 0.97001 * 119.99703 * 95.00546 * 5 3 2 27 27 H 0.96999 * 120.00194 * 180.02562 * 11 10 8 28 28 H 1.07999 * 122.54124 * 0.02713 * 17 16 3 29 29 H 1.08004 * 122.54141 * 180.19951 * 18 17 16 30 30 H 1.07999 * 125.20796 * 179.74883 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6525 2.0974 1.2518 6 6 0.4352 2.6643 1.3670 7 8 -0.3422 2.6318 0.4313 8 6 0.0482 3.3193 2.6176 9 1 0.7379 3.3478 3.4482 10 6 -1.2169 3.9079 2.7374 11 7 -2.0516 3.8729 1.7326 12 14 -1.7110 4.7430 4.3336 13 1 -0.7694 5.8542 4.6231 14 1 -3.0883 5.2830 4.2039 15 1 -1.6681 3.7562 5.4425 16 6 3.5419 1.4443 -0.1238 17 6 4.2202 1.6603 -1.2519 18 6 5.5976 1.6161 -1.1218 19 6 6.0378 1.3553 0.1101 20 16 4.6685 1.1542 1.1954 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 2.2720 2.1231 1.9978 27 1 -2.9277 4.2809 1.8155 28 1 3.7318 1.8574 -2.1947 29 1 6.2654 1.7768 -1.9553 30 1 7.0761 1.2789 0.3971 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044388595.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:12 Heat of formation + Delta-G solvation = -35.739738 kcal Electronic energy + Delta-G solvation = -14803.329501 eV Core-core repulsion = 12303.071044 eV Total energy + Delta-G solvation = -2500.258457 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.06231 -38.54866 -36.19809 -34.49958 -32.85216 -30.86382 -28.45449 -26.62606 -24.15437 -22.73526 -21.41852 -20.26615 -19.17888 -18.00178 -17.40998 -16.40651 -16.31992 -15.79166 -15.69126 -14.55533 -14.37842 -14.06231 -13.72904 -13.57165 -13.38140 -13.08063 -12.85117 -12.66181 -12.58162 -12.38106 -12.24306 -12.01883 -11.78477 -11.53506 -10.89390 -9.82152 -9.59172 -9.38650 -9.35413 -8.25915 -6.82492 0.09454 0.70250 1.14184 1.39985 1.43008 1.54042 1.85945 2.25619 2.51400 3.11876 3.63772 3.69985 4.21262 4.23370 4.28755 4.52698 4.60494 4.73485 4.79955 4.95596 5.01963 5.19246 5.26731 5.33253 5.42344 5.58595 5.60015 5.90276 6.20366 6.29056 6.89735 7.53399 8.52884 8.70557 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.033298 B = 0.006771 C = 0.006102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.683239 B = 4134.170993 C = 4587.791676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.113 4.113 3 C 0.223 3.777 4 H 0.061 0.939 5 N -0.751 5.751 6 C 0.547 3.453 7 O -0.610 6.610 8 C -0.578 4.578 9 H 0.080 0.920 10 C 0.034 3.966 11 N -0.817 5.817 12 Si 0.991 3.009 13 H -0.257 1.257 14 H -0.274 1.274 15 H -0.256 1.256 16 C -0.194 4.194 17 C -0.140 4.140 18 C -0.137 4.137 19 C -0.209 4.209 20 S 0.094 5.906 21 H 0.035 0.965 22 H 0.032 0.968 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.387 0.613 27 H 0.273 0.727 28 H 0.144 0.856 29 H 0.168 0.832 30 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.341 -5.477 -1.044 15.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.152 4.152 3 C 0.116 3.884 4 H 0.079 0.921 5 N -0.405 5.405 6 C 0.351 3.649 7 O -0.495 6.495 8 C -0.615 4.615 9 H 0.098 0.902 10 C -0.181 4.181 11 N -0.447 5.447 12 Si 0.811 3.189 13 H -0.181 1.181 14 H -0.198 1.198 15 H -0.180 1.180 16 C -0.312 4.312 17 C -0.172 4.172 18 C -0.167 4.167 19 C -0.345 4.345 20 S 0.357 5.643 21 H 0.054 0.946 22 H 0.051 0.949 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.101 0.899 26 H 0.220 0.780 27 H 0.083 0.917 28 H 0.162 0.838 29 H 0.185 0.815 30 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 13.471 -5.777 -0.277 14.660 hybrid contribution -0.186 0.780 -0.709 1.070 sum 13.285 -4.997 -0.986 14.228 Atomic orbital electron populations 1.21632 0.96054 0.99767 1.01407 1.21864 0.95618 0.95356 1.02378 1.19028 0.86767 0.93645 0.88997 0.92085 1.46042 1.17783 1.62015 1.14703 1.18358 0.79809 0.77848 0.88893 1.90569 1.52447 1.64098 1.42432 1.21380 1.01853 1.38840 0.99395 0.90197 1.26832 0.95441 0.94730 1.01131 1.70159 1.06669 1.35007 1.32847 0.85166 0.77795 0.78888 0.77040 1.18115 1.19830 1.18007 1.24698 0.98323 1.10064 0.98081 1.20400 0.94700 1.03327 0.98729 1.20380 0.94489 1.03223 0.98623 1.26012 1.02947 1.09211 0.96296 1.84237 0.96924 1.70206 1.12933 0.94625 0.94885 0.92312 0.91720 0.89878 0.77990 0.91662 0.83819 0.81477 0.78916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.58 8.51 71.98 0.61 -4.97 16 2 C -0.11 -4.08 5.59 30.59 0.17 -3.91 16 3 C 0.22 8.87 2.68 44.24 0.12 8.99 16 4 H 0.06 2.80 7.56 -2.39 -0.02 2.78 16 5 N -0.75 -34.54 5.01 -450.40 -2.26 -36.80 16 6 C 0.55 31.38 6.31 86.36 0.55 31.92 16 7 O -0.61 -39.17 12.15 -4.30 -0.05 -39.22 16 8 C -0.58 -33.04 9.54 24.83 0.24 -32.80 16 9 H 0.08 4.17 7.85 -2.91 -0.02 4.14 16 10 C 0.03 1.91 5.50 85.30 0.47 2.38 16 11 N -0.82 -49.77 11.83 21.83 0.26 -49.51 16 12 Si 0.99 41.37 29.56 68.60 2.03 43.40 16 13 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 14 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 15 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 16 C -0.19 -6.19 5.45 24.59 0.13 -6.06 16 17 C -0.14 -3.83 10.04 21.22 0.21 -3.62 16 18 C -0.14 -2.94 10.18 21.22 0.22 -2.72 16 19 C -0.21 -4.31 11.23 66.72 0.75 -3.56 16 20 S 0.09 2.50 22.31 -56.49 -1.26 1.23 16 21 H 0.03 1.62 7.84 -2.39 -0.02 1.60 16 22 H 0.03 1.68 5.64 -2.39 -0.01 1.67 16 23 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 24 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 26 H 0.39 16.17 7.66 -92.71 -0.71 15.46 16 27 H 0.27 15.18 8.29 -92.71 -0.77 14.41 16 28 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 29 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 30 H 0.19 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -71.42 270.65 2.62 -68.80 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 0.44 Total: 26.45 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: 3.47 Total: -14.35 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -2.00 Total: -86.31 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -0.05 Total: -39.22 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -1.26 Total: 1.23 kcal Total: -71.42 2.62 -68.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044388595.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.060 kcal (2) G-P(sol) polarization free energy of solvation -71.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds