Wall clock time and date at job start Sun Mar 29 2020 22:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35912 * 117.00266 * 2 1 4 4 C 1.38509 * 120.08048 * 0.02562 * 3 2 1 5 5 C 1.38465 * 120.00250 * 179.97438 * 4 3 2 6 6 F 1.35092 * 119.91106 * 179.97438 * 5 4 3 7 7 C 1.38665 * 120.17560 * 0.02562 * 5 4 3 8 8 C 1.38046 * 120.16944 * 359.74147 * 7 5 4 9 9 C 1.38969 * 119.99598 * 0.50809 * 8 7 5 10 10 N 1.39556 * 120.09272 * 179.76411 * 9 8 7 11 11 C 1.34780 * 119.99953 * 34.71685 * 10 9 8 12 12 O 1.21792 * 119.99524 * 355.51311 * 11 10 9 13 13 C 1.41740 * 120.00167 * 175.50818 * 11 10 9 14 14 H 1.07992 * 119.99895 * 0.02562 * 13 11 10 15 15 C 1.40143 * 119.99518 * 179.72811 * 13 11 10 16 16 N 1.30623 * 120.00519 * 0.27133 * 15 13 11 17 17 Si 1.86803 * 119.99671 * 180.27650 * 15 13 11 18 18 H 1.48504 * 109.47130 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47252 * 119.99513 * 17 15 13 20 20 H 1.48497 * 109.46974 * 240.00076 * 17 15 13 21 21 H 1.09000 * 109.47213 * 59.99296 * 1 2 3 22 22 H 1.09001 * 109.47235 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47058 * 300.00214 * 1 2 3 24 24 H 1.07996 * 120.00091 * 359.95750 * 4 3 2 25 25 H 1.07993 * 119.91351 * 179.97438 * 7 5 4 26 26 H 1.08001 * 120.00317 * 180.25661 * 8 7 5 27 27 H 0.97003 * 120.00627 * 214.71123 * 10 9 8 28 28 H 0.97000 * 120.00111 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2934 2.3737 0.0005 5 6 1.9238 3.6065 0.0011 6 9 1.1878 4.7394 0.0011 7 6 3.3084 3.6814 0.0005 8 6 4.0656 2.5271 0.0049 9 6 3.4403 1.2860 -0.0009 10 7 4.2039 0.1179 -0.0015 11 6 5.3733 0.0768 0.6673 12 8 5.8036 1.0820 1.2036 13 6 6.1022 -1.1362 0.7465 14 1 5.7207 -2.0274 0.2706 15 6 7.3209 -1.1774 1.4371 16 7 7.7826 -0.0993 2.0123 17 14 8.2854 -2.7742 1.5350 18 1 7.5521 -3.8409 0.8072 19 1 9.6228 -2.5833 0.9186 20 1 8.4476 -3.1680 2.9576 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.2148 2.3187 0.0003 25 1 3.7956 4.6452 0.0005 26 1 5.1438 2.5886 0.0086 27 1 3.8930 -0.6646 -0.4832 28 1 8.6260 -0.1280 2.4906 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044389143.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:53 Heat of formation + Delta-G solvation = -115.485661 kcal Electronic energy + Delta-G solvation = -16528.686626 eV Core-core repulsion = 13458.756951 eV Total energy + Delta-G solvation = -3069.929675 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.84193 -41.38081 -39.59842 -37.89674 -35.27461 -34.42828 -31.36356 -30.52837 -28.55197 -27.76109 -24.02490 -23.40649 -21.79418 -19.71296 -19.29102 -17.94534 -17.89874 -17.36989 -16.86909 -16.62439 -16.26740 -15.84542 -15.57788 -15.20485 -14.83182 -14.64554 -13.81139 -13.69957 -13.33935 -13.14594 -12.78970 -12.70426 -12.43699 -12.36407 -11.97893 -11.89731 -11.07384 -10.74619 -9.91626 -9.60318 -8.56824 -8.37301 -7.00168 0.18874 0.30072 1.39673 1.41247 1.59328 2.21721 2.27462 2.33781 2.65595 2.93944 3.30187 3.62458 3.79445 4.03881 4.14009 4.40786 4.43424 4.53567 4.74515 4.83742 4.99808 5.20331 5.25615 5.31000 5.72917 5.89607 6.12243 6.14808 6.52178 6.75038 7.38671 8.38448 8.57011 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.035425 B = 0.006522 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.221724 B = 4292.427427 C = 4988.522828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.326 6.326 3 C 0.107 3.893 4 C -0.213 4.213 5 C 0.092 3.908 6 F -0.140 7.140 7 C -0.165 4.165 8 C -0.091 4.091 9 C 0.124 3.876 10 N -0.687 5.687 11 C 0.530 3.470 12 O -0.613 6.613 13 C -0.564 4.564 14 H 0.089 0.911 15 C 0.033 3.967 16 N -0.800 5.800 17 Si 1.001 2.999 18 H -0.247 1.247 19 H -0.266 1.266 20 H -0.267 1.267 21 H 0.071 0.929 22 H 0.122 0.878 23 H 0.063 0.937 24 H 0.171 0.829 25 H 0.149 0.851 26 H 0.125 0.875 27 H 0.405 0.595 28 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.172 -0.465 -4.774 13.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.240 6.240 3 C 0.059 3.941 4 C -0.233 4.233 5 C 0.071 3.929 6 F -0.119 7.119 7 C -0.185 4.185 8 C -0.112 4.112 9 C 0.025 3.975 10 N -0.331 5.331 11 C 0.340 3.660 12 O -0.500 6.500 13 C -0.598 4.598 14 H 0.107 0.893 15 C -0.185 4.185 16 N -0.428 5.428 17 Si 0.820 3.180 18 H -0.170 1.170 19 H -0.191 1.191 20 H -0.192 1.192 21 H 0.090 0.910 22 H 0.140 0.860 23 H 0.082 0.918 24 H 0.188 0.812 25 H 0.166 0.834 26 H 0.143 0.857 27 H 0.240 0.760 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.647 0.102 -4.276 12.407 hybrid contribution 0.163 -0.388 -0.004 0.421 sum -11.484 -0.286 -4.279 12.259 Atomic orbital electron populations 1.23418 0.76026 1.05838 1.02465 1.86068 1.23789 1.25335 1.88826 1.18539 0.89724 0.85464 1.00392 1.21043 1.01754 0.89614 1.10844 1.17271 0.88696 0.81830 1.05101 1.91452 1.76993 1.49140 1.94269 1.21047 0.92009 0.99614 1.05809 1.21008 1.00771 0.90319 0.99152 1.17668 0.87981 0.88692 1.03134 1.43515 1.22648 1.12728 1.54231 1.17417 0.79673 0.90425 0.78489 1.90587 1.69658 1.37805 1.51974 1.20581 1.06571 0.96555 1.36135 0.89319 1.27000 0.97919 1.01605 0.91975 1.70154 1.17933 1.31136 1.23569 0.84915 0.77640 0.76400 0.79029 1.16992 1.19055 1.19223 0.90995 0.86004 0.91838 0.81186 0.83357 0.85674 0.75964 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 15 2 O -0.33 -10.14 10.06 -92.55 -0.93 -11.07 15 3 C 0.11 3.79 6.71 22.67 0.15 3.95 15 4 C -0.21 -6.37 9.01 22.39 0.20 -6.17 15 5 C 0.09 2.96 7.30 22.43 0.16 3.12 15 6 F -0.14 -4.16 17.26 44.97 0.78 -3.39 15 7 C -0.17 -5.95 10.02 22.33 0.22 -5.73 15 8 C -0.09 -4.00 8.69 22.40 0.19 -3.81 15 9 C 0.12 5.39 6.32 38.42 0.24 5.63 15 10 N -0.69 -32.65 5.16 -311.00 -1.60 -34.26 15 11 C 0.53 30.58 7.41 85.11 0.63 31.21 15 12 O -0.61 -39.69 12.28 -4.64 -0.06 -39.75 15 13 C -0.56 -31.27 9.31 23.60 0.22 -31.05 15 14 H 0.09 4.42 7.85 -2.91 -0.02 4.40 15 15 C 0.03 1.80 5.50 85.34 0.47 2.27 15 16 N -0.80 -47.19 11.73 21.85 0.26 -46.93 15 17 Si 1.00 39.41 29.56 68.60 2.03 41.43 15 18 H -0.25 -9.03 7.11 99.48 0.71 -8.32 15 19 H -0.27 -10.03 7.11 99.48 0.71 -9.32 15 20 H -0.27 -10.15 7.11 99.48 0.71 -9.44 15 21 H 0.07 1.09 7.66 -2.39 -0.02 1.07 15 22 H 0.12 1.70 8.14 -2.39 -0.02 1.68 15 23 H 0.06 1.08 7.66 -2.39 -0.02 1.06 15 24 H 0.17 3.76 6.30 -2.91 -0.02 3.74 15 25 H 0.15 4.64 8.06 -2.91 -0.02 4.62 15 26 H 0.13 6.38 6.19 -2.91 -0.02 6.36 15 27 H 0.41 17.01 8.53 -92.71 -0.79 16.22 15 28 H 0.28 14.78 8.29 -92.71 -0.77 14.01 15 Total: -1.00 -71.56 256.14 4.50 -67.06 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 0.42 Total: 26.07 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 3.61 Total: 0.83 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -1.35 Total: -81.19 kcal Atomic # 8 Polarization: -49.83 SS G_CDS: -0.99 Total: -50.82 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.78 Total: -3.39 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.43 kcal Total: -71.56 4.50 -67.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044389143.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.431 kcal (2) G-P(sol) polarization free energy of solvation -71.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds