Wall clock time and date at job start Sun Mar 29 2020 22:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.46936 * 2 1 4 4 C 1.33847 * 124.51615 * 90.00130 * 3 2 1 5 5 C 1.37444 * 115.11094 * 179.97438 * 4 3 2 6 6 C 1.36770 * 113.27940 * 359.97438 * 5 4 3 7 7 C 1.46456 * 125.46813 * 180.02562 * 6 5 4 8 8 O 1.21745 * 119.99543 * 7.30010 * 7 6 5 9 9 N 1.34773 * 120.00029 * 187.30926 * 7 6 5 10 10 C 1.46496 * 120.00510 * 5.30637 * 9 7 6 11 11 C 1.36885 * 119.99658 * 185.31164 * 9 7 6 12 12 H 1.08001 * 119.99997 * 338.61195 * 11 9 7 13 13 C 1.39008 * 119.99957 * 158.61564 * 11 9 7 14 14 N 1.31398 * 119.99815 * 342.42751 * 13 11 9 15 15 Si 1.86798 * 120.00030 * 162.42963 * 13 11 9 16 16 H 1.48502 * 109.47177 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47286 * 119.99870 * 15 13 11 18 18 H 1.48501 * 109.47162 * 240.00072 * 15 13 11 19 19 S 1.70619 * 124.51345 * 269.69917 * 3 2 1 20 20 H 1.09002 * 109.47150 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47357 * 299.99770 * 1 2 3 22 22 H 1.09007 * 109.47049 * 60.00080 * 1 2 3 23 23 H 1.08993 * 109.47157 * 119.99788 * 2 1 3 24 24 H 1.09001 * 109.47357 * 240.00230 * 2 1 3 25 25 H 1.08004 * 122.44605 * 359.93891 * 4 3 2 26 26 H 1.07999 * 123.36287 * 179.97438 * 5 4 3 27 27 H 1.09006 * 109.46969 * 35.99184 * 10 9 7 28 28 H 1.08998 * 109.47497 * 155.99052 * 10 9 7 29 29 H 1.08999 * 109.47431 * 275.99852 * 10 9 7 30 30 H 0.97003 * 119.99713 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2851 2.1359 1.1029 5 6 2.7376 3.4141 0.8783 6 6 2.8478 3.7230 -0.4495 7 6 3.3029 5.0065 -0.9885 8 8 3.7464 5.8581 -0.2400 9 7 3.2306 5.2448 -2.3131 10 6 2.5911 4.2692 -3.1992 11 6 3.7549 6.3986 -2.8304 12 1 3.9083 7.2559 -2.1917 13 6 4.0898 6.4669 -4.1778 14 7 4.2360 5.3628 -4.8752 15 14 4.3322 8.1280 -4.9970 16 1 4.1111 9.2078 -4.0017 17 1 5.7154 8.2204 -5.5293 18 1 3.3620 8.2767 -6.1114 19 16 2.3615 2.3298 -1.4059 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 2.1433 1.7377 2.0968 26 1 2.9817 4.1056 1.6711 27 1 1.7433 3.8142 -2.6869 28 1 2.2433 4.7714 -4.1019 29 1 3.3107 3.4959 -3.4679 30 1 4.4700 5.4105 -5.8153 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049286.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:35 Heat of formation + Delta-G solvation = -2.634588 kcal Electronic energy + Delta-G solvation = -14721.593676 eV Core-core repulsion = 12222.770767 eV Total energy + Delta-G solvation = -2498.822910 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.61063 -37.31159 -34.75174 -33.38907 -31.79625 -28.46338 -26.49199 -25.36909 -23.88752 -21.99191 -20.64235 -17.82840 -17.30733 -16.89864 -15.34302 -15.12431 -14.52830 -14.24611 -14.03651 -13.83632 -13.26529 -12.70524 -12.39645 -12.08279 -12.03089 -11.67028 -11.46053 -11.38514 -11.27847 -11.03291 -10.91592 -10.47729 -10.38230 -9.87067 -9.11577 -8.58977 -8.08566 -7.98893 -7.72458 -6.49891 -3.94468 1.18822 2.13456 2.57586 2.98416 3.14983 3.20078 3.27646 4.03423 4.25237 4.78296 4.93928 5.03578 5.11933 5.35027 5.61687 5.70052 5.82056 5.87285 5.93448 6.11082 6.14155 6.21864 6.55709 6.61509 6.78343 6.97287 6.98578 7.43921 8.01074 8.35279 9.05076 9.25001 9.85895 10.54570 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.045944 B = 0.006709 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.289313 B = 4172.198944 C = 4637.833289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.047 4.047 3 C -0.259 4.259 4 C -0.143 4.143 5 C -0.101 4.101 6 C -0.215 4.215 7 C 0.502 3.498 8 O -0.583 6.583 9 N -0.430 5.430 10 C 0.092 3.908 11 C -0.301 4.301 12 H 0.106 0.894 13 C 0.030 3.970 14 N -0.869 5.869 15 Si 0.929 3.071 16 H -0.265 1.265 17 H -0.280 1.280 18 H -0.278 1.278 19 S 0.214 5.786 20 H 0.055 0.945 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.127 0.873 26 H 0.142 0.858 27 H 0.040 0.960 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.386 -9.729 3.307 12.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.086 4.086 3 C -0.378 4.378 4 C -0.174 4.174 5 C -0.133 4.133 6 C -0.336 4.336 7 C 0.291 3.709 8 O -0.469 6.469 9 N -0.146 5.146 10 C -0.054 4.054 11 C -0.429 4.429 12 H 0.124 0.876 13 C -0.174 4.174 14 N -0.507 5.507 15 Si 0.755 3.245 16 H -0.189 1.189 17 H -0.205 1.205 18 H -0.204 1.204 19 S 0.482 5.518 20 H 0.074 0.926 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.144 0.856 26 H 0.160 0.840 27 H 0.058 0.942 28 H 0.111 0.889 29 H 0.081 0.919 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.219 -9.673 1.905 11.656 hybrid contribution 0.270 0.797 1.065 1.358 sum -5.950 -8.876 2.971 11.091 Atomic orbital electron populations 1.21788 0.94853 1.01344 1.02449 1.19974 0.95758 0.90395 1.02465 1.24646 1.10155 1.02114 1.00842 1.19744 1.04728 0.94316 0.98648 1.20518 1.01024 0.96409 0.95337 1.25059 1.11683 0.99412 0.97479 1.16809 0.85140 0.85790 0.83193 1.90648 1.52315 1.46191 1.57779 1.43508 1.47789 1.18716 1.04633 1.21745 0.95484 0.92863 0.95281 1.19805 1.38875 0.90763 0.93502 0.87611 1.25411 0.95955 0.99074 0.96991 1.70023 1.44154 1.27056 1.09502 0.85818 0.78008 0.81645 0.79038 1.18944 1.20542 1.20401 1.83715 1.60248 1.01989 1.05850 0.92565 0.92487 0.92443 0.90914 0.91292 0.85553 0.84012 0.94215 0.88864 0.91878 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.89 37.16 0.37 -1.14 16 2 C -0.05 -0.55 6.36 -27.88 -0.18 -0.73 16 3 C -0.26 -3.96 5.53 -35.85 -0.20 -4.16 16 4 C -0.14 -2.30 9.99 -41.41 -0.41 -2.72 16 5 C -0.10 -1.93 10.02 -40.40 -0.40 -2.34 16 6 C -0.22 -4.66 6.20 -36.81 -0.23 -4.89 16 7 C 0.50 13.20 7.58 -12.95 -0.10 13.11 16 8 O -0.58 -17.14 16.52 5.15 0.09 -17.06 16 9 N -0.43 -11.35 3.01 -123.77 -0.37 -11.72 16 10 C 0.09 2.07 7.15 59.84 0.43 2.50 16 11 C -0.30 -8.39 9.30 -15.01 -0.14 -8.53 16 12 H 0.11 3.08 7.38 -52.49 -0.39 2.70 16 13 C 0.03 0.79 4.93 -17.45 -0.09 0.70 16 14 N -0.87 -22.58 10.95 55.50 0.61 -21.98 16 15 Si 0.93 20.17 29.59 -169.99 -5.03 15.14 16 16 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 19 S 0.21 3.72 17.84 -107.50 -1.92 1.80 16 20 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 26 H 0.14 2.69 8.06 -52.49 -0.42 2.27 16 27 H 0.04 0.79 5.09 -27.18 -0.14 0.66 16 28 H 0.09 2.17 6.60 -51.93 -0.34 1.82 16 29 H 0.06 1.43 7.32 -51.93 -0.38 1.05 16 30 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 267.72 15.07 4.03 4.03 Total: -1.00 -30.50 267.72 -6.89 -37.39 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -3.34 Total: 0.59 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -0.95 Total: -8.20 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: 0.23 Total: -33.70 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: 0.09 Total: -17.06 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -1.92 Total: 1.80 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.50 -6.89 -37.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049286.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.753 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds