Wall clock time and date at job start Sun Mar 29 2020 22:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47324 * 2 1 4 4 C 1.37096 * 120.00170 * 263.56171 * 3 2 1 5 5 H 1.07994 * 120.00071 * 188.39331 * 4 3 2 6 6 C 1.38953 * 119.99940 * 8.38214 * 4 3 2 7 7 N 1.31413 * 119.99629 * 25.17494 * 6 4 3 8 8 Si 1.86796 * 120.00130 * 205.16851 * 6 4 3 9 9 H 1.48503 * 109.47261 * 84.99103 * 8 6 4 10 10 H 1.48508 * 109.47160 * 204.99124 * 8 6 4 11 11 H 1.48504 * 109.47218 * 324.98727 * 8 6 4 12 12 C 1.34779 * 120.00048 * 83.55963 * 3 2 1 13 13 O 1.21291 * 119.99829 * 180.02562 * 12 3 2 14 14 C 1.50703 * 119.99674 * 359.97438 * 12 3 2 15 15 C 1.50701 * 109.46888 * 180.02562 * 14 12 3 16 16 C 1.33395 * 125.20286 * 90.00149 * 15 14 12 17 17 C 1.38423 * 114.92006 * 179.97438 * 16 15 14 18 18 C 1.33386 * 114.91879 * 0.02562 * 17 16 15 19 19 S 1.75884 * 125.20169 * 269.69756 * 15 14 12 20 20 H 1.09003 * 109.47427 * 59.99963 * 1 2 3 21 21 H 1.09000 * 109.47428 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46937 * 299.99792 * 1 2 3 23 23 H 1.09001 * 109.46937 * 240.00208 * 2 1 3 24 24 H 1.08995 * 109.47401 * 120.00338 * 2 1 3 25 25 H 0.97002 * 119.99576 * 180.02562 * 7 6 4 26 26 H 1.09001 * 109.47362 * 300.00023 * 14 12 3 27 27 H 1.09000 * 109.46895 * 60.00416 * 14 12 3 28 28 H 1.08002 * 122.53626 * 359.95650 * 16 15 14 29 29 H 1.08001 * 122.53699 * 180.02562 * 17 16 15 30 30 H 1.08009 * 125.20044 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3724 1.9831 -1.1798 5 1 2.8579 2.9477 -1.1694 6 6 2.1067 1.3520 -2.3889 7 7 1.1281 0.4789 -2.4731 8 14 3.1403 1.7447 -3.8944 9 1 4.3645 0.9041 -3.8874 10 1 2.3535 1.4633 -5.1221 11 1 3.5245 3.1790 -3.8707 12 6 2.1196 2.0602 1.1599 13 8 2.5235 3.2039 1.1598 14 6 1.7298 1.3987 2.4566 15 6 1.9346 2.3650 3.5948 16 6 1.0180 3.2191 4.0528 17 6 1.4345 4.0102 5.1097 18 6 2.6893 3.7988 5.5095 19 16 3.4163 2.5338 4.5273 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 0.9429 0.0380 -3.3171 26 1 0.6809 1.1053 2.4140 27 1 2.3482 0.5151 2.6140 28 1 0.0263 3.2883 3.6309 29 1 0.7920 4.7429 5.5752 30 1 3.1820 4.3211 6.3165 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049432.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:48 Heat of formation + Delta-G solvation = 9.640530 kcal Electronic energy + Delta-G solvation = -14905.825604 eV Core-core repulsion = 12407.534984 eV Total energy + Delta-G solvation = -2498.290620 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.75391 -37.23281 -35.03498 -32.12531 -31.19383 -29.39434 -26.92370 -24.67042 -22.87484 -22.10481 -19.30975 -18.68088 -16.83115 -16.57652 -16.04448 -15.16326 -14.52653 -14.19269 -14.00150 -12.87782 -12.78670 -12.61677 -12.45401 -12.07650 -11.97736 -11.68988 -11.36364 -11.14567 -10.96758 -10.73889 -10.39788 -10.33060 -10.12267 -9.84517 -8.89749 -8.53421 -8.11196 -8.08172 -7.75326 -6.35727 -3.76729 1.38713 2.02180 2.38229 3.12952 3.16483 3.26663 3.31808 3.88831 4.14429 4.89633 5.06957 5.22967 5.33988 5.62848 5.80055 5.89223 5.91449 5.97374 6.22502 6.47952 6.54707 6.60916 6.67926 6.74720 6.87158 7.25098 7.47066 7.73165 8.09902 8.51967 9.19586 9.44999 10.00791 10.65081 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.040374 B = 0.006581 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.352664 B = 4253.535164 C = 4589.362883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.119 3.881 3 N -0.442 5.442 4 C -0.306 4.306 5 H 0.104 0.896 6 C 0.030 3.970 7 N -0.867 5.867 8 Si 0.918 3.082 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.271 1.271 12 C 0.444 3.556 13 O -0.582 6.582 14 C -0.068 4.068 15 C -0.121 4.121 16 C -0.147 4.147 17 C -0.126 4.126 18 C -0.231 4.231 19 S 0.093 5.907 20 H 0.092 0.908 21 H 0.038 0.962 22 H 0.023 0.977 23 H 0.103 0.897 24 H 0.031 0.969 25 H 0.267 0.733 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.313 -1.539 10.432 10.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.005 4.005 3 N -0.161 5.161 4 C -0.433 4.433 5 H 0.122 0.878 6 C -0.173 4.173 7 N -0.507 5.507 8 Si 0.745 3.255 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.195 1.195 12 C 0.231 3.769 13 O -0.467 6.467 14 C -0.110 4.110 15 C -0.239 4.239 16 C -0.177 4.177 17 C -0.157 4.157 18 C -0.366 4.366 19 S 0.356 5.644 20 H 0.111 0.889 21 H 0.057 0.943 22 H 0.042 0.958 23 H 0.121 0.879 24 H 0.050 0.950 25 H 0.077 0.923 26 H 0.117 0.883 27 H 0.104 0.896 28 H 0.153 0.847 29 H 0.152 0.848 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.221 -1.791 10.239 10.466 hybrid contribution -1.058 0.734 -0.776 1.503 sum 0.163 -1.057 9.464 9.524 Atomic orbital electron populations 1.22132 0.96679 0.99880 1.02038 1.21469 0.94529 0.83735 1.00787 1.43813 1.55621 1.11231 1.05415 1.19726 1.35965 1.05540 0.82104 0.87830 1.25174 0.96016 0.97221 0.98865 1.70112 1.24975 1.28898 1.26676 0.86065 0.79973 0.79196 0.80259 1.20387 1.21137 1.19522 1.19693 0.85634 0.87011 0.84521 1.90537 1.51377 1.18115 1.86631 1.20246 1.03479 0.96315 0.90963 1.23990 0.95928 1.03085 1.00895 1.20008 1.01266 0.97652 0.98741 1.20058 0.95837 1.01437 0.98417 1.25438 0.99134 1.05508 1.06551 1.84057 1.16821 1.35693 1.27803 0.88920 0.94287 0.95758 0.87950 0.95029 0.92303 0.88283 0.89608 0.84719 0.84849 0.82485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.64 37.15 0.36 -2.68 16 2 C 0.12 2.59 5.07 -4.04 -0.02 2.57 16 3 N -0.44 -11.19 2.64 -114.82 -0.30 -11.50 16 4 C -0.31 -8.46 9.43 -14.93 -0.14 -8.60 16 5 H 0.10 3.06 7.31 -52.49 -0.38 2.68 16 6 C 0.03 0.77 4.90 -17.47 -0.09 0.69 16 7 N -0.87 -21.94 8.65 55.50 0.48 -21.46 16 8 Si 0.92 20.45 29.62 -169.99 -5.04 15.42 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 12 C 0.44 10.89 7.57 -10.98 -0.08 10.81 16 13 O -0.58 -16.41 15.63 5.55 0.09 -16.32 16 14 C -0.07 -1.29 4.80 -29.03 -0.14 -1.43 16 15 C -0.12 -2.21 5.00 -36.00 -0.18 -2.39 16 16 C -0.15 -2.50 10.05 -41.21 -0.41 -2.92 16 17 C -0.13 -1.87 10.18 -41.21 -0.42 -2.29 16 18 C -0.23 -3.30 11.23 29.04 0.33 -2.97 16 19 S 0.09 1.51 23.33 -107.50 -2.51 -1.00 16 20 H 0.09 2.18 6.38 -51.93 -0.33 1.85 16 21 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.02 0.45 6.45 -51.93 -0.33 0.12 16 23 H 0.10 2.42 5.83 -51.93 -0.30 2.12 16 24 H 0.03 0.59 6.71 -51.93 -0.35 0.25 16 25 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 26 H 0.10 1.72 6.41 -51.93 -0.33 1.39 16 27 H 0.09 1.46 7.42 -51.93 -0.39 1.08 16 28 H 0.14 2.14 8.06 -52.49 -0.42 1.72 16 29 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.16 1.76 8.06 -52.48 -0.42 1.33 16 LS Contribution 266.18 15.07 4.01 4.01 Total: -1.00 -30.01 266.18 -7.31 -37.32 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -3.24 Total: 2.74 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -0.80 Total: -9.21 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.18 Total: -32.96 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: 0.09 Total: -16.32 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.04 Total: 15.42 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.51 Total: -1.00 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.01 -7.31 -37.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049432.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.958 kcal (2) G-P(sol) polarization free energy of solvation -30.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds