Wall clock time and date at job start Sun Mar 29 2020 22:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47324 * 2 1 4 4 C 1.37096 * 120.00170 * 263.56171 * 3 2 1 5 5 H 1.07994 * 120.00071 * 188.39331 * 4 3 2 6 6 C 1.38953 * 119.99940 * 8.38214 * 4 3 2 7 7 N 1.31413 * 119.99629 * 25.17494 * 6 4 3 8 8 Si 1.86796 * 120.00130 * 205.16851 * 6 4 3 9 9 H 1.48503 * 109.47261 * 84.99103 * 8 6 4 10 10 H 1.48508 * 109.47160 * 204.99124 * 8 6 4 11 11 H 1.48504 * 109.47218 * 324.98727 * 8 6 4 12 12 C 1.34779 * 120.00048 * 83.55963 * 3 2 1 13 13 O 1.21291 * 119.99829 * 180.02562 * 12 3 2 14 14 C 1.50703 * 119.99674 * 359.97438 * 12 3 2 15 15 C 1.50701 * 109.46888 * 180.02562 * 14 12 3 16 16 C 1.33395 * 125.20286 * 90.00149 * 15 14 12 17 17 C 1.38423 * 114.92006 * 179.97438 * 16 15 14 18 18 C 1.33386 * 114.91879 * 0.02562 * 17 16 15 19 19 S 1.75884 * 125.20169 * 269.69756 * 15 14 12 20 20 H 1.09003 * 109.47427 * 59.99963 * 1 2 3 21 21 H 1.09000 * 109.47428 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46937 * 299.99792 * 1 2 3 23 23 H 1.09001 * 109.46937 * 240.00208 * 2 1 3 24 24 H 1.08995 * 109.47401 * 120.00338 * 2 1 3 25 25 H 0.97002 * 119.99576 * 180.02562 * 7 6 4 26 26 H 1.09001 * 109.47362 * 300.00023 * 14 12 3 27 27 H 1.09000 * 109.46895 * 60.00416 * 14 12 3 28 28 H 1.08002 * 122.53626 * 359.95650 * 16 15 14 29 29 H 1.08001 * 122.53699 * 180.02562 * 17 16 15 30 30 H 1.08009 * 125.20044 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3724 1.9831 -1.1798 5 1 2.8579 2.9477 -1.1694 6 6 2.1067 1.3520 -2.3889 7 7 1.1281 0.4789 -2.4731 8 14 3.1403 1.7447 -3.8944 9 1 4.3645 0.9041 -3.8874 10 1 2.3535 1.4633 -5.1221 11 1 3.5245 3.1790 -3.8707 12 6 2.1196 2.0602 1.1599 13 8 2.5235 3.2039 1.1598 14 6 1.7298 1.3987 2.4566 15 6 1.9346 2.3650 3.5948 16 6 1.0180 3.2191 4.0528 17 6 1.4345 4.0102 5.1097 18 6 2.6893 3.7988 5.5095 19 16 3.4163 2.5338 4.5273 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 0.9429 0.0380 -3.3171 26 1 0.6809 1.1053 2.4140 27 1 2.3482 0.5151 2.6140 28 1 0.0263 3.2883 3.6309 29 1 0.7920 4.7429 5.5752 30 1 3.1820 4.3211 6.3165 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049432.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:48 Heat of formation + Delta-G solvation = -7.716357 kcal Electronic energy + Delta-G solvation = -14906.578256 eV Core-core repulsion = 12407.534984 eV Total energy + Delta-G solvation = -2499.043272 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.55370 -38.53708 -36.94826 -33.97634 -32.75663 -31.16363 -28.38644 -26.48181 -24.28156 -23.75772 -20.98495 -20.00333 -18.77704 -18.04978 -17.74551 -16.53305 -16.36202 -15.86061 -15.77935 -14.57070 -14.48829 -14.11487 -13.79308 -13.63141 -13.43081 -13.18289 -13.02551 -12.83422 -12.66730 -12.37499 -12.12559 -12.01435 -11.65849 -11.57227 -10.82018 -10.37085 -9.69905 -9.48231 -9.31187 -8.33000 -5.82484 0.14677 0.79980 1.17382 1.36383 1.43040 1.52957 1.90776 2.03482 2.30263 3.05861 3.16006 3.83927 4.11198 4.24916 4.30381 4.42059 4.57129 4.74552 4.79126 4.90060 4.93639 5.16221 5.26990 5.43376 5.46321 5.50923 5.65773 5.92834 6.09875 6.55695 7.21103 7.52495 8.09278 8.65077 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.040374 B = 0.006581 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.352664 B = 4253.535164 C = 4589.362883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.117 3.883 3 N -0.453 5.453 4 C -0.351 4.351 5 H 0.069 0.931 6 C 0.007 3.993 7 N -0.867 5.867 8 Si 0.978 3.022 9 H -0.270 1.270 10 H -0.272 1.272 11 H -0.282 1.282 12 C 0.432 3.568 13 O -0.630 6.630 14 C -0.053 4.053 15 C -0.160 4.160 16 C -0.150 4.150 17 C -0.138 4.138 18 C -0.215 4.215 19 S 0.078 5.922 20 H 0.057 0.943 21 H 0.067 0.933 22 H 0.036 0.964 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.274 0.726 26 H 0.116 0.884 27 H 0.105 0.895 28 H 0.139 0.861 29 H 0.165 0.835 30 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.642 -2.189 11.386 11.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.005 4.005 3 N -0.172 5.172 4 C -0.478 4.478 5 H 0.087 0.913 6 C -0.197 4.197 7 N -0.505 5.505 8 Si 0.802 3.198 9 H -0.195 1.195 10 H -0.197 1.197 11 H -0.207 1.207 12 C 0.222 3.778 13 O -0.518 6.518 14 C -0.095 4.095 15 C -0.278 4.278 16 C -0.180 4.180 17 C -0.168 4.168 18 C -0.350 4.350 19 S 0.341 5.659 20 H 0.076 0.924 21 H 0.086 0.914 22 H 0.055 0.945 23 H 0.101 0.899 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.134 0.866 27 H 0.123 0.877 28 H 0.157 0.843 29 H 0.182 0.818 30 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 0.866 -2.490 11.192 11.499 hybrid contribution -0.985 0.965 -1.058 1.738 sum -0.119 -1.525 10.135 10.249 Atomic orbital electron populations 1.21981 0.95460 1.01368 1.00925 1.21568 0.95503 0.82056 1.01405 1.44049 1.55554 1.12422 1.05128 1.19539 1.38569 1.05594 0.84137 0.91312 1.25800 0.96335 0.96922 1.00603 1.70186 1.24400 1.28301 1.27572 0.85200 0.78796 0.78321 0.77480 1.19509 1.19659 1.20700 1.20639 0.84493 0.86714 0.86002 1.90486 1.53347 1.20385 1.87605 1.20097 1.04585 0.96673 0.88136 1.24050 0.97322 1.04512 1.01877 1.20343 1.01368 0.97235 0.99054 1.20363 0.96585 1.01866 0.98021 1.25891 0.98769 1.04041 1.06290 1.84045 1.16605 1.37051 1.28202 0.92363 0.91399 0.94470 0.89944 0.91673 0.91632 0.86645 0.87718 0.84344 0.81756 0.79050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.47 9.64 71.98 0.69 -4.78 16 2 C 0.12 5.04 5.07 86.38 0.44 5.48 16 3 N -0.45 -23.33 2.64 -635.55 -1.68 -25.01 16 4 C -0.35 -20.05 9.43 84.04 0.79 -19.26 16 5 H 0.07 4.32 7.31 -2.91 -0.02 4.30 16 6 C 0.01 0.34 4.90 84.93 0.42 0.76 16 7 N -0.87 -43.58 8.65 21.66 0.19 -43.40 16 8 Si 0.98 42.14 29.62 68.60 2.03 44.17 16 9 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 10 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 C 0.43 21.56 7.57 87.66 0.66 22.22 16 13 O -0.63 -36.81 15.63 -3.06 -0.05 -36.86 16 14 C -0.05 -1.99 4.80 29.10 0.14 -1.85 16 15 C -0.16 -5.72 5.00 24.59 0.12 -5.60 16 16 C -0.15 -4.90 10.05 21.22 0.21 -4.68 16 17 C -0.14 -3.74 10.18 21.22 0.22 -3.52 16 18 C -0.21 -5.56 11.23 66.72 0.75 -4.82 16 19 S 0.08 2.45 23.33 -56.49 -1.32 1.13 16 20 H 0.06 2.71 6.38 -2.39 -0.02 2.70 16 21 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 22 H 0.04 1.33 6.45 -2.39 -0.02 1.32 16 23 H 0.08 3.86 5.83 -2.39 -0.01 3.84 16 24 H 0.07 2.33 6.71 -2.39 -0.02 2.31 16 25 H 0.27 12.87 8.31 -92.71 -0.77 12.10 16 26 H 0.12 3.82 6.41 -2.39 -0.02 3.81 16 27 H 0.10 3.42 7.42 -2.39 -0.02 3.40 16 28 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 29 H 0.17 3.35 8.06 -2.91 -0.02 3.32 16 30 H 0.19 3.53 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -66.48 266.18 4.77 -61.71 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 1.15 Total: 14.29 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 4.45 Total: -16.04 kcal Atomic # 7 Polarization: -66.91 SS G_CDS: -1.49 Total: -68.40 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -0.05 Total: -36.86 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -1.32 Total: 1.13 kcal Total: -66.48 4.77 -61.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049432.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.996 kcal (2) G-P(sol) polarization free energy of solvation -66.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds