Wall clock time and date at job start Sun Mar 29 2020 22:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47047 * 2 1 4 4 C 1.37097 * 119.99950 * 264.77348 * 3 2 1 5 5 H 1.08002 * 120.00088 * 138.84913 * 4 3 2 6 6 C 1.38948 * 119.99919 * 318.84813 * 4 3 2 7 7 N 1.31408 * 120.00087 * 341.83226 * 6 4 3 8 8 Si 1.86796 * 120.00012 * 161.83765 * 6 4 3 9 9 H 1.48501 * 109.47142 * 59.99739 * 8 6 4 10 10 H 1.48506 * 109.47413 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46939 * 300.00027 * 8 6 4 12 12 C 1.34775 * 120.00059 * 84.77128 * 3 2 1 13 13 O 1.21293 * 120.00224 * 180.02562 * 12 3 2 14 14 C 1.50705 * 119.99818 * 359.97438 * 12 3 2 15 15 C 1.50702 * 109.46827 * 180.02562 * 14 12 3 16 16 C 1.38425 * 122.54139 * 90.00440 * 15 14 12 17 17 C 1.33381 * 114.92268 * 179.97438 * 16 15 14 18 18 S 1.75884 * 109.59500 * 0.02562 * 17 16 15 19 19 C 1.33390 * 122.54006 * 269.97707 * 15 14 12 20 20 H 1.08998 * 109.46813 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47061 * 299.99757 * 1 2 3 22 22 H 1.09002 * 109.47021 * 59.99791 * 1 2 3 23 23 H 1.09000 * 109.47061 * 240.00243 * 2 1 3 24 24 H 1.08992 * 109.47188 * 120.00156 * 2 1 3 25 25 H 0.97002 * 120.00185 * 179.97438 * 7 6 4 26 26 H 1.08998 * 109.46902 * 60.00456 * 14 12 3 27 27 H 1.08998 * 109.47470 * 300.00301 * 14 12 3 28 28 H 1.07996 * 122.53395 * 359.70744 * 16 15 14 29 29 H 1.08001 * 125.20507 * 179.97438 * 17 16 15 30 30 H 1.08006 * 125.20230 * 0.06254 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3488 1.9915 -1.1824 5 1 2.0742 3.0219 -1.3535 6 6 3.0371 1.2843 -2.1605 7 7 3.6791 0.1819 -1.8452 8 14 3.0500 1.9006 -3.9238 9 1 3.6536 3.2567 -3.9698 10 1 3.8492 0.9748 -4.7661 11 1 1.6578 1.9608 -4.4373 12 6 2.1427 2.0520 1.1623 13 8 2.5466 3.1958 1.1623 14 6 1.7788 1.3814 2.4620 15 6 2.0064 2.3397 3.6026 16 6 1.0232 3.2005 4.0593 17 6 1.3887 3.9821 5.0765 18 16 3.0592 3.6433 5.5101 19 6 3.1703 2.4224 4.2489 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 4.1593 -0.3120 -2.5281 26 1 2.4003 0.4968 2.6007 27 1 0.7293 1.0881 2.4382 28 1 0.0364 3.2393 3.6222 29 1 0.7559 4.7120 5.5594 30 1 4.0472 1.8309 4.0304 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049465.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:49 Heat of formation + Delta-G solvation = 0.106229 kcal Electronic energy + Delta-G solvation = -14899.534771 eV Core-core repulsion = 12400.830712 eV Total energy + Delta-G solvation = -2498.704059 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.93270 -37.22869 -34.81431 -32.11978 -30.51592 -29.39611 -27.67074 -24.79692 -22.81883 -22.15411 -19.32009 -18.14702 -17.11478 -16.72984 -15.84399 -15.01514 -14.92518 -14.06712 -13.79491 -12.99664 -12.86166 -12.67343 -12.53453 -12.09407 -11.88406 -11.69919 -11.55932 -11.04973 -11.02087 -10.94879 -10.49043 -10.34287 -10.28008 -10.07975 -8.88119 -8.51202 -8.34317 -7.94085 -7.37628 -6.28707 -3.96936 1.38105 2.01098 2.30532 3.10202 3.21935 3.26880 3.31067 3.98726 4.20892 4.96680 5.06252 5.23578 5.42002 5.70674 5.75786 5.85887 5.92362 5.99050 6.13019 6.23430 6.36647 6.38090 6.53394 6.77153 6.89918 6.90409 7.23818 7.61479 8.34072 8.57209 9.24954 9.44525 10.08268 10.76577 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.038446 B = 0.006335 C = 0.005954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.118303 B = 4418.936877 C = 4701.914019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.103 3.897 3 N -0.444 5.444 4 C -0.308 4.308 5 H 0.086 0.914 6 C 0.038 3.962 7 N -0.874 5.874 8 Si 0.918 3.082 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.466 3.534 13 O -0.572 6.572 14 C -0.083 4.083 15 C -0.067 4.067 16 C -0.114 4.114 17 C -0.219 4.219 18 S 0.065 5.935 19 C -0.199 4.199 20 H 0.050 0.950 21 H 0.042 0.958 22 H 0.056 0.944 23 H 0.103 0.897 24 H 0.048 0.952 25 H 0.267 0.733 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.136 0.864 29 H 0.159 0.841 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.896 -0.765 9.874 11.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.022 4.022 3 N -0.165 5.165 4 C -0.436 4.436 5 H 0.104 0.896 6 C -0.166 4.166 7 N -0.512 5.512 8 Si 0.744 3.256 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.254 3.746 13 O -0.454 6.454 14 C -0.125 4.125 15 C -0.079 4.079 16 C -0.145 4.145 17 C -0.354 4.354 18 S 0.327 5.673 19 C -0.334 4.334 20 H 0.069 0.931 21 H 0.061 0.939 22 H 0.076 0.924 23 H 0.121 0.879 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.154 0.846 29 H 0.177 0.823 30 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.563 0.236 10.860 11.432 hybrid contribution -0.882 -0.432 -2.006 2.234 sum -4.446 -0.196 8.853 9.909 Atomic orbital electron populations 1.22234 0.98304 1.00332 1.01520 1.21452 0.91560 0.85715 1.03422 1.43440 1.56542 1.11736 1.04743 1.19321 1.34765 0.98495 0.90977 0.89618 1.25409 0.94078 0.96600 1.00517 1.69916 1.29612 1.17613 1.34018 0.86150 0.78338 0.78837 0.82261 1.19781 1.21001 1.19905 1.20243 0.81978 0.87957 0.84462 1.90537 1.49522 1.18627 1.86733 1.20490 1.02878 0.97347 0.91828 1.18533 0.93209 0.98952 0.97184 1.20043 1.00797 0.96747 0.96870 1.25386 0.98577 1.06802 1.04600 1.83916 1.10387 1.37047 1.35918 1.25316 1.01874 1.04476 1.01700 0.93110 0.93856 0.92439 0.87921 0.93365 0.92288 0.89272 0.89439 0.84629 0.82318 0.82213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 10.15 37.16 0.38 -2.53 16 2 C 0.10 2.20 5.41 -4.04 -0.02 2.17 16 3 N -0.44 -11.26 2.50 -114.81 -0.29 -11.55 16 4 C -0.31 -8.60 8.84 -14.93 -0.13 -8.74 16 5 H 0.09 2.51 7.82 -52.49 -0.41 2.10 16 6 C 0.04 1.02 4.95 -17.47 -0.09 0.93 16 7 N -0.87 -23.76 11.61 55.50 0.64 -23.12 16 8 Si 0.92 20.81 29.59 -169.99 -5.03 15.78 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 12 C 0.47 11.49 7.59 -10.98 -0.08 11.40 16 13 O -0.57 -16.33 15.95 5.55 0.09 -16.25 16 14 C -0.08 -1.55 4.56 -29.03 -0.13 -1.68 16 15 C -0.07 -1.20 4.29 -106.25 -0.46 -1.66 16 16 C -0.11 -1.85 9.98 -41.21 -0.41 -2.27 16 17 C -0.22 -3.15 11.23 29.04 0.33 -2.83 16 18 S 0.06 0.94 23.34 -107.50 -2.51 -1.57 16 19 C -0.20 -3.38 10.98 29.04 0.32 -3.06 16 20 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 21 H 0.04 0.70 6.60 -51.93 -0.34 0.36 16 22 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 23 H 0.10 2.43 5.76 -51.93 -0.30 2.13 16 24 H 0.05 0.93 6.66 -51.93 -0.35 0.59 16 25 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 26 H 0.09 1.55 7.39 -51.93 -0.38 1.16 16 27 H 0.09 1.43 6.52 -51.93 -0.34 1.09 16 28 H 0.14 2.01 8.06 -52.49 -0.42 1.58 16 29 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.16 2.55 8.06 -52.48 -0.42 2.13 16 LS Contribution 271.79 15.07 4.10 4.10 Total: -1.00 -31.58 271.79 -6.67 -38.25 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -3.37 Total: 2.60 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -0.30 Total: -8.25 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.36 Total: -34.67 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: 0.09 Total: -16.25 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.51 Total: -1.57 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.58 -6.67 -38.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049465.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.358 kcal (2) G-P(sol) polarization free energy of solvation -31.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds