Wall clock time and date at job start Sun Mar 29 2020 22:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47047 * 2 1 4 4 C 1.37097 * 119.99950 * 264.77348 * 3 2 1 5 5 H 1.08002 * 120.00088 * 138.84913 * 4 3 2 6 6 C 1.38948 * 119.99919 * 318.84813 * 4 3 2 7 7 N 1.31408 * 120.00087 * 341.83226 * 6 4 3 8 8 Si 1.86796 * 120.00012 * 161.83765 * 6 4 3 9 9 H 1.48501 * 109.47142 * 59.99739 * 8 6 4 10 10 H 1.48506 * 109.47413 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46939 * 300.00027 * 8 6 4 12 12 C 1.34775 * 120.00059 * 84.77128 * 3 2 1 13 13 O 1.21293 * 120.00224 * 180.02562 * 12 3 2 14 14 C 1.50705 * 119.99818 * 359.97438 * 12 3 2 15 15 C 1.50702 * 109.46827 * 180.02562 * 14 12 3 16 16 C 1.38425 * 122.54139 * 90.00440 * 15 14 12 17 17 C 1.33381 * 114.92268 * 179.97438 * 16 15 14 18 18 S 1.75884 * 109.59500 * 0.02562 * 17 16 15 19 19 C 1.33390 * 122.54006 * 269.97707 * 15 14 12 20 20 H 1.08998 * 109.46813 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47061 * 299.99757 * 1 2 3 22 22 H 1.09002 * 109.47021 * 59.99791 * 1 2 3 23 23 H 1.09000 * 109.47061 * 240.00243 * 2 1 3 24 24 H 1.08992 * 109.47188 * 120.00156 * 2 1 3 25 25 H 0.97002 * 120.00185 * 179.97438 * 7 6 4 26 26 H 1.08998 * 109.46902 * 60.00456 * 14 12 3 27 27 H 1.08998 * 109.47470 * 300.00301 * 14 12 3 28 28 H 1.07996 * 122.53395 * 359.70744 * 16 15 14 29 29 H 1.08001 * 125.20507 * 179.97438 * 17 16 15 30 30 H 1.08006 * 125.20230 * 0.06254 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3488 1.9915 -1.1824 5 1 2.0742 3.0219 -1.3535 6 6 3.0371 1.2843 -2.1605 7 7 3.6791 0.1819 -1.8452 8 14 3.0500 1.9006 -3.9238 9 1 3.6536 3.2567 -3.9698 10 1 3.8492 0.9748 -4.7661 11 1 1.6578 1.9608 -4.4373 12 6 2.1427 2.0520 1.1623 13 8 2.5466 3.1958 1.1623 14 6 1.7788 1.3814 2.4620 15 6 2.0064 2.3397 3.6026 16 6 1.0232 3.2005 4.0593 17 6 1.3887 3.9821 5.0765 18 16 3.0592 3.6433 5.5101 19 6 3.1703 2.4224 4.2489 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 4.1593 -0.3120 -2.5281 26 1 2.4003 0.4968 2.6007 27 1 0.7293 1.0881 2.4382 28 1 0.0364 3.2393 3.6222 29 1 0.7559 4.7120 5.5594 30 1 4.0472 1.8309 4.0304 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049465.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:49 Heat of formation + Delta-G solvation = -18.948891 kcal Electronic energy + Delta-G solvation = -14900.361063 eV Core-core repulsion = 12400.830712 eV Total energy + Delta-G solvation = -2499.530351 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.65515 -38.66363 -36.74066 -34.07623 -31.94169 -31.09987 -29.10325 -26.70229 -24.20829 -23.74084 -21.03694 -19.49366 -18.69011 -18.36900 -17.68791 -16.87159 -16.39198 -15.82565 -15.46977 -14.59153 -14.51392 -14.01571 -13.89297 -13.58769 -13.47023 -13.31390 -13.02666 -12.79626 -12.63765 -12.58381 -12.21819 -12.09249 -11.75623 -11.65159 -10.86106 -10.35588 -9.63741 -9.36434 -9.19199 -8.32095 -6.08591 0.15617 0.83452 1.10181 1.39844 1.40617 1.50774 1.81087 2.11718 2.32657 3.03111 3.22470 3.99419 4.10069 4.23901 4.35868 4.41279 4.58712 4.66971 4.68420 4.76157 4.92108 5.07575 5.17519 5.33483 5.46146 5.52859 5.58715 5.62957 6.26044 6.59855 7.22538 7.50950 8.13238 8.71264 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.038446 B = 0.006335 C = 0.005954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.118303 B = 4418.936877 C = 4701.914019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.101 3.899 3 N -0.457 5.457 4 C -0.341 4.341 5 H 0.058 0.942 6 C 0.004 3.996 7 N -0.893 5.893 8 Si 0.980 3.020 9 H -0.280 1.280 10 H -0.271 1.271 11 H -0.262 1.262 12 C 0.454 3.546 13 O -0.623 6.623 14 C -0.068 4.068 15 C -0.088 4.088 16 C -0.139 4.139 17 C -0.210 4.210 18 S 0.103 5.897 19 C -0.225 4.225 20 H 0.085 0.915 21 H 0.057 0.943 22 H 0.039 0.961 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.273 0.727 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.146 0.854 29 H 0.192 0.808 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.784 -1.200 10.621 12.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.023 4.023 3 N -0.177 5.177 4 C -0.470 4.470 5 H 0.076 0.924 6 C -0.199 4.199 7 N -0.530 5.530 8 Si 0.803 3.197 9 H -0.205 1.205 10 H -0.196 1.196 11 H -0.187 1.187 12 C 0.243 3.757 13 O -0.509 6.509 14 C -0.111 4.111 15 C -0.101 4.101 16 C -0.170 4.170 17 C -0.345 4.345 18 S 0.366 5.634 19 C -0.360 4.360 20 H 0.104 0.896 21 H 0.076 0.924 22 H 0.058 0.942 23 H 0.096 0.904 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.120 0.880 27 H 0.132 0.868 28 H 0.164 0.836 29 H 0.209 0.791 30 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.469 -0.241 11.617 12.449 hybrid contribution -0.555 -0.273 -2.172 2.258 sum -5.023 -0.514 9.445 10.710 Atomic orbital electron populations 1.22122 0.95188 1.02568 1.01394 1.21578 0.94093 0.83487 1.03108 1.43743 1.56492 1.13032 1.04409 1.19287 1.36523 0.98061 0.93095 0.92382 1.26131 0.93174 0.96661 1.03885 1.69983 1.29541 1.18212 1.35275 0.85222 0.78912 0.77947 0.77612 1.20549 1.19607 1.18690 1.21188 0.80892 0.87503 0.86093 1.90486 1.51728 1.20942 1.87742 1.20369 1.04542 0.97366 0.88784 1.18669 0.94236 0.99797 0.97370 1.20202 1.01246 0.97480 0.98044 1.25846 0.98825 1.06232 1.03586 1.83753 1.10254 1.35277 1.34090 1.25562 1.01807 1.05659 1.02975 0.89617 0.92373 0.94165 0.90430 0.91376 0.91798 0.87994 0.86846 0.83622 0.79076 0.82196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 10.15 71.98 0.73 -4.42 16 2 C 0.10 4.24 5.41 86.38 0.47 4.70 16 3 N -0.46 -23.51 2.50 -635.53 -1.59 -25.11 16 4 C -0.34 -19.65 8.84 84.04 0.74 -18.91 16 5 H 0.06 3.58 7.82 -2.91 -0.02 3.56 16 6 C 0.00 0.21 4.95 84.93 0.42 0.63 16 7 N -0.89 -48.77 11.61 21.66 0.25 -48.52 16 8 Si 0.98 42.94 29.59 68.60 2.03 44.97 16 9 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 12 C 0.45 22.67 7.59 87.66 0.66 23.34 16 13 O -0.62 -36.70 15.95 -3.07 -0.05 -36.75 16 14 C -0.07 -2.51 4.56 29.10 0.13 -2.37 16 15 C -0.09 -3.10 4.29 -20.92 -0.09 -3.19 16 16 C -0.14 -4.34 9.98 21.21 0.21 -4.13 16 17 C -0.21 -5.54 11.23 66.72 0.75 -4.79 16 18 S 0.10 2.80 23.34 -56.49 -1.32 1.48 16 19 C -0.22 -7.50 10.98 66.72 0.73 -6.77 16 20 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 21 H 0.06 1.75 6.60 -2.39 -0.02 1.73 16 22 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.08 3.68 5.76 -2.39 -0.01 3.66 16 24 H 0.07 2.54 6.66 -2.39 -0.02 2.52 16 25 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 26 H 0.10 3.42 7.39 -2.39 -0.02 3.40 16 27 H 0.11 3.48 6.52 -2.39 -0.02 3.47 16 28 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 29 H 0.19 3.66 8.06 -2.91 -0.02 3.63 16 30 H 0.16 5.12 8.06 -2.91 -0.02 5.10 16 Total: -1.00 -69.69 271.79 5.23 -64.46 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 1.14 Total: 15.37 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: 4.76 Total: -15.91 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -1.34 Total: -73.62 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -0.05 Total: -36.75 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -1.32 Total: 1.48 kcal Total: -69.69 5.23 -64.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049465.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.515 kcal (2) G-P(sol) polarization free energy of solvation -69.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds