Wall clock time and date at job start Sun Mar 29 2020 22:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47542 * 2 1 4 4 C 1.50707 * 109.47286 * 119.99429 * 2 1 3 5 5 C 1.38236 * 119.98313 * 338.25883 * 4 2 1 6 6 C 1.38222 * 120.01341 * 179.72353 * 5 4 2 7 7 C 1.38358 * 119.98151 * 0.54472 * 6 5 4 8 8 Cl 1.73596 * 120.01299 * 179.70650 * 7 6 5 9 9 C 1.38348 * 119.97458 * 359.72230 * 7 6 5 10 10 C 1.38224 * 119.98813 * 0.02562 * 9 7 6 11 11 N 1.46502 * 109.47530 * 239.99636 * 2 1 3 12 12 C 1.46498 * 119.99518 * 303.99007 * 11 2 1 13 13 C 1.36936 * 120.00080 * 123.98367 * 11 2 1 14 14 H 1.07999 * 120.00203 * 8.40131 * 13 11 2 15 15 C 1.38817 * 119.99924 * 188.39503 * 13 11 2 16 16 N 1.31621 * 119.99592 * 354.51624 * 15 13 11 17 17 Si 1.86792 * 119.99951 * 174.51471 * 15 13 11 18 18 H 1.48499 * 109.47243 * 60.00353 * 17 15 13 19 19 H 1.48504 * 109.47222 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47425 * 300.00099 * 17 15 13 21 21 H 1.09007 * 109.47291 * 60.00469 * 1 2 3 22 22 H 1.08995 * 109.47271 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47334 * 300.00347 * 1 2 3 24 24 H 1.08000 * 119.99522 * 359.97438 * 5 4 2 25 25 H 1.07994 * 120.01031 * 180.26612 * 6 5 4 26 26 H 1.08000 * 120.00736 * 179.97438 * 9 7 6 27 27 H 1.07994 * 119.99314 * 180.02562 * 10 9 7 28 28 H 1.09003 * 109.46778 * 236.33656 * 12 11 2 29 29 H 1.09001 * 109.47396 * 116.34395 * 12 11 2 30 30 H 1.08997 * 109.47395 * 356.33899 * 12 11 2 31 31 H 0.97005 * 119.99263 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.2140 -0.8371 2.3375 6 6 1.6722 -1.4935 3.4644 7 6 2.9540 -2.0137 3.4884 8 17 3.5328 -2.8315 4.9060 9 6 3.7744 -1.8816 2.3822 10 6 3.3132 -1.2296 1.2540 11 7 2.0184 -0.6907 -1.1961 12 6 1.5938 -2.0652 -1.4728 13 6 2.8716 -0.0514 -2.0555 14 1 3.2915 0.9065 -1.7864 15 6 3.1968 -0.6347 -3.2724 16 7 2.7728 -1.8483 -3.5547 17 14 4.2362 0.3028 -4.5093 18 1 5.5527 0.6280 -3.9042 19 1 4.4412 -0.5340 -5.7189 20 1 3.5416 1.5595 -4.8881 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 0.2152 -0.4269 2.3204 25 1 1.0313 -1.5963 4.3275 26 1 4.7752 -2.2871 2.4005 27 1 3.9534 -1.1268 0.3904 28 1 2.4718 -2.7035 -1.5725 29 1 1.0205 -2.0889 -2.3995 30 1 0.9735 -2.4260 -0.6524 31 1 3.0004 -2.2561 -4.4049 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046512318.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:28 Heat of formation + Delta-G solvation = 31.881972 kcal Electronic energy + Delta-G solvation = -14911.507320 eV Core-core repulsion = 12412.137454 eV Total energy + Delta-G solvation = -2499.369866 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.51187 -37.99143 -37.07043 -34.38891 -32.13727 -31.41187 -29.57230 -28.07514 -25.62773 -23.54061 -23.31702 -20.82185 -18.89908 -18.10264 -17.04295 -16.21383 -16.08855 -15.65711 -15.20458 -14.56663 -14.40136 -14.33260 -13.99421 -13.49949 -13.00347 -12.73873 -12.66113 -12.58887 -12.39597 -12.24046 -12.07892 -12.04244 -11.80180 -11.63867 -11.46389 -10.61109 -9.88347 -9.42794 -8.91128 -7.71804 -5.15824 0.28237 0.45462 1.20224 1.48250 1.49885 1.56211 2.51566 2.78296 3.36923 3.68157 3.99826 4.03002 4.05678 4.43853 4.50865 4.58964 4.70449 4.80562 4.86103 5.04529 5.12624 5.15709 5.35522 5.40231 5.46214 5.56677 5.67284 5.84844 5.89383 5.98590 6.34015 7.20627 7.93517 8.32904 9.26041 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.034832 B = 0.006339 C = 0.005805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.673247 B = 4416.214784 C = 4822.005735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.198 3.802 3 H 0.073 0.927 4 C -0.091 4.091 5 C -0.106 4.106 6 C -0.112 4.112 7 C -0.049 4.049 8 Cl -0.074 7.074 9 C -0.122 4.122 10 C -0.098 4.098 11 N -0.611 5.611 12 C 0.197 3.803 13 C -0.251 4.251 14 H 0.079 0.921 15 C -0.060 4.060 16 N -0.946 5.946 17 Si 0.968 3.032 18 H -0.280 1.280 19 H -0.298 1.298 20 H -0.278 1.278 21 H 0.044 0.956 22 H 0.048 0.952 23 H 0.087 0.913 24 H 0.158 0.842 25 H 0.155 0.845 26 H 0.133 0.867 27 H 0.108 0.892 28 H 0.006 0.994 29 H 0.014 0.986 30 H 0.014 0.986 31 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.843 1.498 14.413 14.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.091 3.909 3 H 0.091 0.909 4 C -0.094 4.094 5 C -0.125 4.125 6 C -0.130 4.130 7 C -0.076 4.076 8 Cl -0.046 7.046 9 C -0.140 4.140 10 C -0.116 4.116 11 N -0.334 5.334 12 C 0.053 3.947 13 C -0.380 4.380 14 H 0.097 0.903 15 C -0.253 4.253 16 N -0.596 5.596 17 Si 0.797 3.203 18 H -0.206 1.206 19 H -0.225 1.225 20 H -0.204 1.204 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.105 0.895 24 H 0.175 0.825 25 H 0.173 0.827 26 H 0.150 0.850 27 H 0.126 0.874 28 H 0.024 0.976 29 H 0.032 0.968 30 H 0.032 0.968 31 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.756 1.337 14.372 14.695 hybrid contribution 0.950 0.004 -1.079 1.438 sum -1.807 1.341 13.293 13.482 Atomic orbital electron populations 1.22210 0.95067 1.01627 1.01888 1.19491 0.93893 0.94520 0.82977 0.90878 1.21068 0.93934 0.97806 0.96543 1.21384 1.00739 0.98906 0.91445 1.21276 0.93899 0.98067 0.99765 1.20969 0.95851 1.01652 0.89091 1.98336 1.89034 1.77963 1.39222 1.21106 1.00386 1.00359 0.92174 1.21000 0.96503 0.97245 0.96877 1.44205 1.53613 1.12063 1.23533 1.20508 0.95656 0.84118 0.94425 1.19655 1.19547 1.02255 0.96560 0.90331 1.25612 1.02445 0.97597 0.99646 1.70425 1.51225 1.14693 1.23219 0.85309 0.78653 0.77706 0.78588 1.20575 1.22467 1.20432 0.93661 0.93262 0.89466 0.82457 0.82690 0.84957 0.87413 0.97558 0.96785 0.96775 0.94763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.69 8.16 71.98 0.59 -4.10 16 2 C 0.20 7.51 3.06 44.24 0.14 7.65 16 3 H 0.07 2.78 7.80 -2.39 -0.02 2.76 16 4 C -0.09 -3.12 5.00 -19.86 -0.10 -3.22 16 5 C -0.11 -2.85 9.13 22.27 0.20 -2.65 16 6 C -0.11 -2.77 9.83 22.29 0.22 -2.55 16 7 C -0.05 -1.36 6.32 22.32 0.14 -1.22 16 8 Cl -0.07 -1.78 28.96 -2.72 -0.08 -1.86 16 9 C -0.12 -3.83 9.83 22.29 0.22 -3.61 16 10 C -0.10 -3.59 9.22 22.27 0.21 -3.38 16 11 N -0.61 -29.58 2.03 -706.98 -1.44 -31.01 16 12 C 0.20 9.98 8.04 127.77 1.03 11.01 16 13 C -0.25 -13.38 9.73 84.03 0.82 -12.56 16 14 H 0.08 4.02 7.69 -2.91 -0.02 4.00 16 15 C -0.06 -3.33 5.46 84.86 0.46 -2.87 16 16 N -0.95 -55.85 9.47 21.65 0.21 -55.65 16 17 Si 0.97 45.07 29.56 68.60 2.03 47.10 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 22 H 0.05 1.58 6.91 -2.39 -0.02 1.56 16 23 H 0.09 2.02 6.64 -2.39 -0.02 2.00 16 24 H 0.16 3.30 6.00 -2.91 -0.02 3.28 16 25 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 26 H 0.13 3.83 8.06 -2.91 -0.02 3.80 16 27 H 0.11 4.66 7.61 -2.91 -0.02 4.63 16 28 H 0.01 0.33 7.18 -2.39 -0.02 0.31 16 29 H 0.01 0.77 6.92 -2.39 -0.02 0.75 16 30 H 0.01 0.62 6.65 -2.39 -0.02 0.61 16 31 H 0.24 14.10 8.31 -92.70 -0.77 13.32 16 Total: -1.00 -60.39 271.08 5.76 -54.64 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: 1.12 Total: 4.28 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: 3.92 Total: -17.49 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -1.23 Total: -86.66 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -0.08 Total: -1.86 kcal Total: -60.39 5.76 -54.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046512318.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.518 kcal (2) G-P(sol) polarization free energy of solvation -60.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds