Wall clock time and date at job start Sun Mar 29 2020 22:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47494 * 2 1 4 4 C 1.50705 * 109.46804 * 239.99885 * 2 1 3 5 5 C 1.38237 * 119.98835 * 200.66287 * 4 2 1 6 6 C 1.38216 * 120.01573 * 179.73024 * 5 4 2 7 7 C 1.38349 * 119.98108 * 0.54175 * 6 5 4 8 8 Cl 1.73602 * 120.00995 * 179.71010 * 7 6 5 9 9 C 1.38352 * 119.97835 * 359.72621 * 7 6 5 10 10 C 1.38212 * 119.98563 * 0.02562 * 9 7 6 11 11 N 1.46504 * 109.47396 * 120.00175 * 2 1 3 12 12 C 1.46498 * 119.99717 * 63.79299 * 11 2 1 13 13 C 1.36930 * 120.00119 * 243.79438 * 11 2 1 14 14 H 1.08005 * 119.99719 * 351.89340 * 13 11 2 15 15 C 1.38814 * 120.00278 * 171.88899 * 13 11 2 16 16 N 1.31617 * 119.99709 * 5.44881 * 15 13 11 17 17 Si 1.86796 * 120.00213 * 185.44672 * 15 13 11 18 18 H 1.48501 * 109.47242 * 59.99830 * 17 15 13 19 19 H 1.48498 * 109.47148 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47039 * 300.00446 * 17 15 13 21 21 H 1.08995 * 109.47519 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46429 * 299.99861 * 1 2 3 23 23 H 1.08999 * 109.47417 * 59.99907 * 1 2 3 24 24 H 1.08002 * 119.99468 * 359.97438 * 5 4 2 25 25 H 1.08000 * 120.00929 * 180.27018 * 6 5 4 26 26 H 1.07999 * 120.00921 * 179.97438 * 9 7 6 27 27 H 1.07996 * 119.99482 * 180.02562 * 10 9 7 28 28 H 1.08996 * 109.47345 * 3.34632 * 12 11 2 29 29 H 1.09002 * 109.47261 * 123.34925 * 12 11 2 30 30 H 1.09006 * 109.46872 * 243.34382 * 12 11 2 31 31 H 0.96994 * 119.99960 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 3.3188 -1.2154 -1.2601 6 6 3.7782 -1.8720 -2.3862 7 6 2.9538 -2.0139 -3.4882 8 17 3.5326 -2.8319 -4.9059 9 6 1.6682 -1.5036 -3.4602 10 6 1.2083 -0.8517 -2.3315 11 7 2.0184 -0.6907 1.1962 12 6 1.7344 -2.1151 1.3867 13 6 2.7404 -0.0047 2.1360 14 1 3.0621 1.0070 1.9372 15 6 3.0587 -0.6096 3.3442 16 7 2.7609 -1.8758 3.5448 17 14 3.9098 0.3735 4.6853 18 1 3.0548 1.5237 5.0742 19 1 4.1383 -0.4960 5.8671 20 1 5.2134 0.8744 4.1802 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3632 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 3.9639 -1.1003 -0.4015 25 1 4.7818 -2.2702 -2.4076 26 1 1.0244 -1.6137 -4.3203 27 1 0.2046 -0.4536 -2.3093 28 1 1.2049 -2.4999 0.5151 29 1 2.6708 -2.6588 1.5123 30 1 1.1161 -2.2467 2.2748 31 1 2.9837 -2.2986 4.3888 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046512321.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:30 Heat of formation + Delta-G solvation = 45.040472 kcal Electronic energy + Delta-G solvation = -14909.355631 eV Core-core repulsion = 12410.556361 eV Total energy + Delta-G solvation = -2498.799270 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.21448 -36.59826 -35.61387 -32.64838 -30.79652 -29.75621 -28.18489 -26.02386 -24.00155 -22.16762 -21.85563 -19.31024 -16.96006 -16.81156 -15.26630 -14.78771 -14.72053 -13.87854 -13.85869 -13.15614 -13.10030 -12.65740 -12.35104 -11.79663 -11.49491 -11.36245 -11.29327 -10.86727 -10.80059 -10.66251 -10.43213 -10.35446 -10.21190 -9.96703 -9.74286 -8.66010 -8.55024 -8.14717 -6.95339 -5.64965 -3.09063 1.53542 1.68598 2.36066 3.38454 3.43944 3.44718 4.02966 4.48632 5.10163 5.19225 5.32907 5.48070 5.51854 5.72344 5.83203 5.97379 6.08699 6.13550 6.31651 6.38868 6.49943 6.63385 6.78296 6.84413 6.86999 7.14526 7.26797 7.65070 7.73028 7.95473 8.37279 9.26076 9.88070 10.32044 11.33858 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.037109 B = 0.006202 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.355340 B = 4513.365239 C = 4883.010931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.205 3.795 3 H 0.077 0.923 4 C -0.073 4.073 5 C -0.077 4.077 6 C -0.117 4.117 7 C -0.047 4.047 8 Cl -0.092 7.092 9 C -0.120 4.120 10 C -0.115 4.115 11 N -0.600 5.600 12 C 0.173 3.827 13 C -0.250 4.250 14 H 0.074 0.926 15 C -0.002 4.002 16 N -0.916 5.916 17 Si 0.908 3.092 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.285 1.285 21 H 0.051 0.949 22 H 0.057 0.943 23 H 0.045 0.955 24 H 0.141 0.859 25 H 0.125 0.875 26 H 0.124 0.876 27 H 0.130 0.870 28 H -0.009 1.009 29 H 0.039 0.961 30 H 0.043 0.957 31 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.742 0.745 -12.351 12.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.096 3.904 3 H 0.095 0.905 4 C -0.076 4.076 5 C -0.096 4.096 6 C -0.136 4.136 7 C -0.073 4.073 8 Cl -0.064 7.064 9 C -0.138 4.138 10 C -0.134 4.134 11 N -0.323 5.323 12 C 0.030 3.970 13 C -0.379 4.379 14 H 0.092 0.908 15 C -0.198 4.198 16 N -0.563 5.563 17 Si 0.738 3.262 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.212 1.212 21 H 0.070 0.930 22 H 0.076 0.924 23 H 0.063 0.937 24 H 0.159 0.841 25 H 0.143 0.857 26 H 0.142 0.858 27 H 0.148 0.852 28 H 0.009 0.991 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.642 0.550 -12.273 12.395 hybrid contribution 0.536 0.263 0.632 0.869 sum -1.106 0.812 -11.641 11.722 Atomic orbital electron populations 1.22370 0.97830 1.01366 1.00404 1.19271 0.92183 0.94967 0.83984 0.90527 1.21161 0.93608 0.96724 0.96085 1.21206 0.96154 0.95256 0.96959 1.21059 0.99663 1.00493 0.92335 1.20840 0.95526 1.02008 0.88952 1.98327 1.89133 1.78387 1.40536 1.20917 0.94045 0.99734 0.99146 1.21170 1.00163 0.99583 0.92450 1.44059 1.62246 1.06871 1.19099 1.20963 0.98906 0.82401 0.94770 1.19303 1.27136 0.97216 0.94269 0.90848 1.24876 1.00917 0.96243 0.97812 1.70216 1.51990 1.09767 1.24353 0.86282 0.79177 0.79018 0.81733 1.21163 1.21662 1.21177 0.93022 0.92401 0.93656 0.84112 0.85677 0.85840 0.85186 0.99081 0.94269 0.93875 0.93883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 8.25 37.16 0.31 -2.43 16 2 C 0.20 3.98 3.06 -69.08 -0.21 3.77 16 3 H 0.08 1.48 7.78 -51.93 -0.40 1.08 16 4 C -0.07 -1.30 4.66 -104.62 -0.49 -1.79 16 5 C -0.08 -1.40 8.95 -39.59 -0.35 -1.76 16 6 C -0.12 -1.87 9.83 -39.55 -0.39 -2.26 16 7 C -0.05 -0.70 6.32 -39.50 -0.25 -0.95 16 8 Cl -0.09 -1.23 28.96 -51.86 -1.50 -2.73 16 9 C -0.12 -1.71 9.83 -39.55 -0.39 -2.10 16 10 C -0.11 -1.74 9.12 -39.59 -0.36 -2.10 16 11 N -0.60 -14.35 2.12 -174.81 -0.37 -14.72 16 12 C 0.17 4.28 7.76 59.85 0.46 4.74 16 13 C -0.25 -6.59 9.80 -15.06 -0.15 -6.74 16 14 H 0.07 1.86 7.67 -52.48 -0.40 1.46 16 15 C 0.00 -0.05 5.46 -17.43 -0.10 -0.15 16 16 N -0.92 -26.13 9.47 55.49 0.53 -25.60 16 17 Si 0.91 21.53 29.56 -169.99 -5.02 16.50 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H 0.05 0.90 7.36 -51.93 -0.38 0.52 16 22 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.04 0.62 6.66 -51.93 -0.35 0.28 16 24 H 0.14 2.85 7.70 -52.49 -0.40 2.44 16 25 H 0.13 1.81 8.06 -52.49 -0.42 1.38 16 26 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 27 H 0.13 1.70 5.99 -52.49 -0.31 1.39 16 28 H -0.01 -0.21 6.85 -51.93 -0.36 -0.57 16 29 H 0.04 1.05 7.18 -51.93 -0.37 0.68 16 30 H 0.04 1.17 6.92 -51.93 -0.36 0.81 16 31 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 271.14 15.07 4.09 4.09 Total: -1.00 -27.64 271.14 -7.94 -35.58 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -3.74 Total: -1.37 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -1.91 Total: -11.75 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.16 Total: -40.32 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -1.50 Total: -2.73 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.64 -7.94 -35.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046512321.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.622 kcal (2) G-P(sol) polarization free energy of solvation -27.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds