Wall clock time and date at job start Sun Mar 29 2020 22:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47494 * 2 1 4 4 C 1.50705 * 109.46804 * 239.99885 * 2 1 3 5 5 C 1.38237 * 119.98835 * 200.66287 * 4 2 1 6 6 C 1.38216 * 120.01573 * 179.73024 * 5 4 2 7 7 C 1.38349 * 119.98108 * 0.54175 * 6 5 4 8 8 Cl 1.73602 * 120.00995 * 179.71010 * 7 6 5 9 9 C 1.38352 * 119.97835 * 359.72621 * 7 6 5 10 10 C 1.38212 * 119.98563 * 0.02562 * 9 7 6 11 11 N 1.46504 * 109.47396 * 120.00175 * 2 1 3 12 12 C 1.46498 * 119.99717 * 63.79299 * 11 2 1 13 13 C 1.36930 * 120.00119 * 243.79438 * 11 2 1 14 14 H 1.08005 * 119.99719 * 351.89340 * 13 11 2 15 15 C 1.38814 * 120.00278 * 171.88899 * 13 11 2 16 16 N 1.31617 * 119.99709 * 5.44881 * 15 13 11 17 17 Si 1.86796 * 120.00213 * 185.44672 * 15 13 11 18 18 H 1.48501 * 109.47242 * 59.99830 * 17 15 13 19 19 H 1.48498 * 109.47148 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47039 * 300.00446 * 17 15 13 21 21 H 1.08995 * 109.47519 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46429 * 299.99861 * 1 2 3 23 23 H 1.08999 * 109.47417 * 59.99907 * 1 2 3 24 24 H 1.08002 * 119.99468 * 359.97438 * 5 4 2 25 25 H 1.08000 * 120.00929 * 180.27018 * 6 5 4 26 26 H 1.07999 * 120.00921 * 179.97438 * 9 7 6 27 27 H 1.07996 * 119.99482 * 180.02562 * 10 9 7 28 28 H 1.08996 * 109.47345 * 3.34632 * 12 11 2 29 29 H 1.09002 * 109.47261 * 123.34925 * 12 11 2 30 30 H 1.09006 * 109.46872 * 243.34382 * 12 11 2 31 31 H 0.96994 * 119.99960 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 3.3188 -1.2154 -1.2601 6 6 3.7782 -1.8720 -2.3862 7 6 2.9538 -2.0139 -3.4882 8 17 3.5326 -2.8319 -4.9059 9 6 1.6682 -1.5036 -3.4602 10 6 1.2083 -0.8517 -2.3315 11 7 2.0184 -0.6907 1.1962 12 6 1.7344 -2.1151 1.3867 13 6 2.7404 -0.0047 2.1360 14 1 3.0621 1.0070 1.9372 15 6 3.0587 -0.6096 3.3442 16 7 2.7609 -1.8758 3.5448 17 14 3.9098 0.3735 4.6853 18 1 3.0548 1.5237 5.0742 19 1 4.1383 -0.4960 5.8671 20 1 5.2134 0.8744 4.1802 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3632 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 3.9639 -1.1003 -0.4015 25 1 4.7818 -2.2702 -2.4076 26 1 1.0244 -1.6137 -4.3203 27 1 0.2046 -0.4536 -2.3093 28 1 1.2049 -2.4999 0.5151 29 1 2.6708 -2.6588 1.5123 30 1 1.1161 -2.2467 2.2748 31 1 2.9837 -2.2986 4.3888 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046512321.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:30 Heat of formation + Delta-G solvation = 31.751198 kcal Electronic energy + Delta-G solvation = -14909.931897 eV Core-core repulsion = 12410.556361 eV Total energy + Delta-G solvation = -2499.375536 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.53412 -37.98725 -37.06586 -34.38994 -32.15765 -31.40098 -29.59985 -28.05136 -25.61685 -23.56564 -23.33440 -20.83972 -18.89188 -18.11011 -17.03140 -16.22861 -16.07677 -15.65524 -15.20618 -14.54411 -14.41944 -14.31989 -14.03793 -13.47412 -12.99181 -12.76586 -12.66090 -12.60480 -12.38589 -12.24546 -12.07837 -12.06428 -11.79799 -11.64896 -11.47272 -10.61283 -9.89078 -9.44120 -8.90929 -7.71741 -5.15749 0.27066 0.44614 1.19878 1.48397 1.50132 1.56490 2.51653 2.77273 3.37121 3.68067 3.98171 4.01760 4.04937 4.44292 4.49952 4.58668 4.70994 4.80315 4.85769 5.03445 5.11923 5.15258 5.34864 5.40032 5.46214 5.55905 5.66602 5.84012 5.88858 5.97143 6.33774 7.20564 7.93304 8.32847 9.26220 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.037109 B = 0.006202 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.355340 B = 4513.365239 C = 4883.010931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.198 3.802 3 H 0.073 0.927 4 C -0.089 4.089 5 C -0.097 4.097 6 C -0.120 4.120 7 C -0.048 4.048 8 Cl -0.074 7.074 9 C -0.111 4.111 10 C -0.106 4.106 11 N -0.612 5.612 12 C 0.200 3.800 13 C -0.251 4.251 14 H 0.079 0.921 15 C -0.060 4.060 16 N -0.947 5.947 17 Si 0.969 3.031 18 H -0.278 1.278 19 H -0.298 1.298 20 H -0.279 1.279 21 H 0.046 0.954 22 H 0.043 0.957 23 H 0.086 0.914 24 H 0.107 0.893 25 H 0.134 0.866 26 H 0.156 0.844 27 H 0.158 0.842 28 H 0.012 0.988 29 H 0.007 0.993 30 H 0.013 0.987 31 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.644 1.483 -14.506 14.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.092 3.908 3 H 0.091 0.909 4 C -0.091 4.091 5 C -0.116 4.116 6 C -0.139 4.139 7 C -0.075 4.075 8 Cl -0.045 7.045 9 C -0.129 4.129 10 C -0.124 4.124 11 N -0.335 5.335 12 C 0.055 3.945 13 C -0.381 4.381 14 H 0.097 0.903 15 C -0.253 4.253 16 N -0.596 5.596 17 Si 0.798 3.202 18 H -0.204 1.204 19 H -0.225 1.225 20 H -0.205 1.205 21 H 0.065 0.935 22 H 0.062 0.938 23 H 0.104 0.896 24 H 0.126 0.874 25 H 0.151 0.849 26 H 0.173 0.827 27 H 0.175 0.825 28 H 0.030 0.970 29 H 0.025 0.975 30 H 0.031 0.969 31 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.553 1.319 -14.472 14.754 hybrid contribution 0.836 0.033 1.132 1.408 sum -1.717 1.352 -13.340 13.518 Atomic orbital electron populations 1.22240 0.95480 1.01439 1.01740 1.19489 0.93770 0.94593 0.82988 0.90875 1.20943 0.93928 0.97859 0.96411 1.20982 0.96407 0.97310 0.96907 1.21104 1.00407 1.00227 0.92176 1.20971 0.95781 1.01602 0.89145 1.98338 1.89038 1.77932 1.39192 1.21272 0.93880 0.98096 0.99701 1.21378 1.00713 0.98856 0.91480 1.44208 1.62321 1.06628 1.20336 1.20486 0.96763 0.83060 0.94195 1.19671 1.26355 0.97416 0.94650 0.90277 1.25610 1.02548 0.97160 0.99992 1.70418 1.53777 1.11140 1.24290 0.85299 0.78417 0.77612 0.78865 1.20439 1.22468 1.20537 0.93492 0.93780 0.89586 0.87447 0.84852 0.82661 0.82495 0.96989 0.97468 0.96884 0.94756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.78 8.25 71.98 0.59 -4.19 16 2 C 0.20 7.55 3.06 44.25 0.14 7.69 16 3 H 0.07 2.79 7.78 -2.39 -0.02 2.77 16 4 C -0.09 -3.04 4.66 -19.86 -0.09 -3.13 16 5 C -0.10 -3.54 8.95 22.26 0.20 -3.34 16 6 C -0.12 -3.74 9.83 22.29 0.22 -3.52 16 7 C -0.05 -1.32 6.32 22.32 0.14 -1.18 16 8 Cl -0.07 -1.75 28.96 -2.72 -0.08 -1.83 16 9 C -0.11 -2.73 9.83 22.29 0.22 -2.52 16 10 C -0.11 -2.83 9.12 22.27 0.20 -2.63 16 11 N -0.61 -29.70 2.12 -706.97 -1.50 -31.20 16 12 C 0.20 10.12 7.76 127.77 0.99 11.11 16 13 C -0.25 -13.45 9.80 84.04 0.82 -12.63 16 14 H 0.08 4.05 7.67 -2.91 -0.02 4.02 16 15 C -0.06 -3.34 5.46 84.86 0.46 -2.88 16 16 N -0.95 -55.97 9.47 21.65 0.20 -55.77 16 17 Si 0.97 45.08 29.56 68.60 2.03 47.11 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 21 H 0.05 1.53 7.36 -2.39 -0.02 1.52 16 22 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.09 2.03 6.66 -2.39 -0.02 2.01 16 24 H 0.11 4.58 7.70 -2.91 -0.02 4.56 16 25 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 26 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 27 H 0.16 3.31 5.99 -2.91 -0.02 3.30 16 28 H 0.01 0.53 6.85 -2.39 -0.02 0.51 16 29 H 0.01 0.38 7.18 -2.39 -0.02 0.37 16 30 H 0.01 0.72 6.92 -2.38 -0.02 0.70 16 31 H 0.24 14.12 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -60.47 271.14 5.68 -54.79 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: 1.12 Total: 4.12 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 3.90 Total: -17.22 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -1.29 Total: -86.96 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 17 Polarization: -1.75 SS G_CDS: -0.08 Total: -1.83 kcal Total: -60.47 5.68 -54.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046512321.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.542 kcal (2) G-P(sol) polarization free energy of solvation -60.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds