Wall clock time and date at job start Sun Mar 29 2020 22:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47276 * 2 1 4 4 C 1.53000 * 109.47045 * 120.00174 * 2 1 3 5 5 C 1.50702 * 109.47360 * 185.00249 * 4 2 1 6 6 C 1.38424 * 122.54287 * 89.99381 * 5 4 2 7 7 C 1.33389 * 114.92185 * 179.97438 * 6 5 4 8 8 S 1.75883 * 109.59334 * 359.97438 * 7 6 5 9 9 C 1.33387 * 122.53542 * 269.71002 * 5 4 2 10 10 N 1.46494 * 109.47441 * 240.00126 * 2 1 3 11 11 C 1.34776 * 120.00015 * 84.99918 * 10 2 1 12 12 O 1.21693 * 120.00245 * 0.02562 * 11 10 2 13 13 C 1.46377 * 119.99891 * 180.02562 * 11 10 2 14 14 H 1.08002 * 120.00320 * 353.93777 * 13 11 10 15 15 C 1.40055 * 119.99772 * 173.93985 * 13 11 10 16 16 N 1.30671 * 120.00115 * 6.15209 * 15 13 11 17 17 Si 1.86806 * 119.99790 * 186.15240 * 15 13 11 18 18 H 1.48494 * 109.47258 * 94.98333 * 17 15 13 19 19 H 1.48497 * 109.46646 * 214.98467 * 17 15 13 20 20 H 1.48498 * 109.46954 * 334.98105 * 17 15 13 21 21 H 1.09007 * 109.46827 * 59.99649 * 1 2 3 22 22 H 1.09001 * 109.47090 * 300.00012 * 1 2 3 23 23 H 1.08994 * 109.47215 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46852 * 304.99494 * 4 2 1 25 25 H 1.08996 * 109.47280 * 64.99884 * 4 2 1 26 26 H 1.08002 * 122.53710 * 359.96374 * 6 5 4 27 27 H 1.07997 * 125.20269 * 179.97438 * 7 6 5 28 28 H 1.08003 * 125.20797 * 0.02562 * 9 5 4 29 29 H 0.97000 * 120.00350 * 265.00390 * 10 2 1 30 30 H 0.96998 * 119.99439 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3128 6 6 4.1880 0.4274 1.9547 7 6 5.5202 0.3704 1.9184 8 16 6.0253 -1.0640 1.0347 9 6 4.3493 -1.5211 0.7595 10 7 2.0183 -0.6905 -1.1961 11 6 2.1471 -0.0182 -2.3571 12 8 1.8581 1.1627 -2.4116 13 6 2.6346 -0.7083 -3.5523 14 1 2.9834 -1.7281 -3.4826 15 6 2.6486 -0.0462 -4.7864 16 7 2.3412 1.2222 -4.8509 17 14 3.1067 -0.9765 -6.3402 18 1 1.8724 -1.4562 -7.0121 19 1 3.8502 -0.0744 -7.2561 20 1 3.9619 -2.1382 -5.9877 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.6053 -0.2617 2.1370 25 1 1.7516 -1.7715 1.2056 26 1 3.6540 1.2264 2.4475 27 1 6.1867 1.0942 2.3636 28 1 4.0238 -2.4002 0.2231 29 1 2.2490 -1.6317 -1.1526 30 1 2.3506 1.6806 -5.7057 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049185765.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:59 Heat of formation + Delta-G solvation = -41.711279 kcal Electronic energy + Delta-G solvation = -14776.711041 eV Core-core repulsion = 12276.193639 eV Total energy + Delta-G solvation = -2500.517402 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.04961 -38.73229 -36.03664 -34.51400 -32.05219 -30.68124 -28.16459 -27.82695 -24.13044 -22.76526 -21.17767 -19.73528 -19.04640 -18.36318 -17.46307 -16.51710 -16.24816 -15.84675 -14.96987 -14.46819 -14.30937 -14.09685 -13.77769 -13.71859 -13.29982 -13.22154 -12.81447 -12.68563 -12.60669 -12.48085 -12.30536 -12.00324 -11.76238 -11.54337 -10.91372 -9.77653 -9.61788 -9.39258 -9.15527 -8.26522 -6.80572 0.19004 0.85899 1.15474 1.38936 1.40239 1.55464 1.86480 2.25167 2.52167 3.21755 3.67692 4.05886 4.09264 4.19574 4.43001 4.52168 4.63374 4.72616 4.80239 4.94124 4.97080 5.17069 5.22444 5.34417 5.42791 5.60128 5.66452 5.94009 6.30307 6.42361 6.90610 7.64938 8.56015 8.73726 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.023526 B = 0.007585 C = 0.006337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.890437 B = 3690.463034 C = 4417.534682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.154 3.846 3 H 0.036 0.964 4 C -0.053 4.053 5 C -0.107 4.107 6 C -0.144 4.144 7 C -0.219 4.219 8 S 0.077 5.923 9 C -0.213 4.213 10 N -0.743 5.743 11 C 0.544 3.456 12 O -0.633 6.633 13 C -0.575 4.575 14 H 0.083 0.917 15 C 0.029 3.971 16 N -0.823 5.823 17 Si 0.993 3.007 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.249 1.249 21 H 0.017 0.983 22 H 0.082 0.918 23 H 0.068 0.932 24 H 0.105 0.895 25 H 0.092 0.908 26 H 0.152 0.848 27 H 0.183 0.817 28 H 0.169 0.831 29 H 0.390 0.610 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.632 -7.167 12.582 14.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.048 3.952 3 H 0.054 0.946 4 C -0.093 4.093 5 C -0.119 4.119 6 C -0.174 4.174 7 C -0.354 4.354 8 S 0.341 5.659 9 C -0.349 4.349 10 N -0.396 5.396 11 C 0.348 3.652 12 O -0.521 6.521 13 C -0.612 4.612 14 H 0.101 0.899 15 C -0.186 4.186 16 N -0.453 5.453 17 Si 0.812 3.188 18 H -0.188 1.188 19 H -0.199 1.199 20 H -0.172 1.172 21 H 0.037 0.963 22 H 0.101 0.899 23 H 0.087 0.913 24 H 0.123 0.877 25 H 0.110 0.890 26 H 0.169 0.831 27 H 0.201 0.799 28 H 0.186 0.814 29 H 0.223 0.777 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.836 -6.783 12.096 14.686 hybrid contribution -1.076 0.311 -0.562 1.253 sum 3.759 -6.472 11.534 13.750 Atomic orbital electron populations 1.22096 0.95643 1.02147 1.01009 1.20590 0.93479 0.95804 0.85305 0.94551 1.20606 0.89271 1.02305 0.97160 1.19084 0.97562 0.95102 1.00127 1.20358 0.94096 1.00230 1.02762 1.25847 0.99273 1.03054 1.07198 1.84061 1.07954 1.20511 1.53421 1.25619 0.95409 1.05906 1.07937 1.45786 1.71802 1.12956 1.09103 1.18468 0.77439 0.85875 0.83426 1.90544 1.57318 1.18548 1.85670 1.21422 1.45977 1.00942 0.92855 0.89850 1.26927 0.92301 0.95186 1.04155 1.70201 1.36837 1.11230 1.26995 0.85083 0.79121 0.78640 0.75913 1.18770 1.19892 1.17225 0.96333 0.89936 0.91294 0.87674 0.88980 0.83091 0.79932 0.81386 0.77656 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.10 9.48 71.98 0.68 -4.42 16 2 C 0.15 5.75 2.56 44.99 0.12 5.87 16 3 H 0.04 1.65 7.58 -2.38 -0.02 1.63 16 4 C -0.05 -1.41 5.01 29.85 0.15 -1.26 16 5 C -0.11 -3.11 4.85 -20.92 -0.10 -3.21 16 6 C -0.14 -3.97 9.98 21.22 0.21 -3.76 16 7 C -0.22 -5.65 11.23 66.72 0.75 -4.91 16 8 S 0.08 2.08 23.34 -56.49 -1.32 0.76 16 9 C -0.21 -6.20 10.49 66.72 0.70 -5.50 16 10 N -0.74 -32.85 4.57 -446.83 -2.04 -34.89 16 11 C 0.54 31.75 7.71 86.36 0.67 32.41 16 12 O -0.63 -42.98 14.71 -4.32 -0.06 -43.04 16 13 C -0.58 -33.05 9.54 24.83 0.24 -32.81 16 14 H 0.08 4.32 7.85 -2.91 -0.02 4.29 16 15 C 0.03 1.65 5.49 85.31 0.47 2.12 16 16 N -0.82 -51.39 11.85 21.84 0.26 -51.13 16 17 Si 0.99 41.82 29.56 68.60 2.03 43.84 16 18 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 19 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 20 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 21 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 22 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 23 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.10 2.21 8.13 -2.38 -0.02 2.19 16 25 H 0.09 2.07 8.12 -2.39 -0.02 2.05 16 26 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 27 H 0.18 3.66 8.06 -2.91 -0.02 3.64 16 28 H 0.17 4.44 7.96 -2.91 -0.02 4.42 16 29 H 0.39 14.95 8.25 -92.71 -0.77 14.18 16 30 H 0.27 15.43 8.29 -92.71 -0.77 14.66 16 Total: -1.00 -76.83 278.42 3.12 -73.71 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.38 Total: 26.22 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: 3.88 Total: -15.47 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -1.78 Total: -86.02 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -0.06 Total: -43.04 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -1.32 Total: 0.76 kcal Total: -76.83 3.12 -73.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049185765.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.996 kcal (2) G-P(sol) polarization free energy of solvation -76.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds