Wall clock time and date at job start Sun Mar 29 2020 22:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99858 * 2 1 4 4 H 1.48497 * 109.46833 * 269.99690 * 3 2 1 5 5 H 1.48505 * 109.46975 * 29.99851 * 3 2 1 6 6 H 1.48500 * 109.46927 * 149.99742 * 3 2 1 7 7 C 1.37872 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99886 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99978 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47072 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47058 * 180.02562 * 10 9 7 12 12 C 1.46896 * 111.00036 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47203 * 180.02562 * 12 11 10 14 14 C 1.38270 * 119.99101 * 270.27514 * 13 12 11 15 15 C 1.38215 * 120.02537 * 180.27948 * 14 13 12 16 16 C 1.38238 * 120.01126 * 359.44038 * 15 14 13 17 17 C 1.38325 * 119.98878 * 0.28199 * 16 15 14 18 18 Cl 1.73606 * 120.01335 * 179.97438 * 17 16 15 19 19 C 1.38193 * 119.99765 * 89.99917 * 13 12 11 20 20 H 0.97000 * 119.99713 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47335 * 60.00376 * 9 7 2 22 22 H 1.09003 * 109.47223 * 300.00428 * 9 7 2 23 23 H 1.09002 * 109.46911 * 60.00356 * 10 9 7 24 24 H 1.08994 * 109.47503 * 300.00193 * 10 9 7 25 25 H 1.00901 * 111.00004 * 303.95503 * 11 10 9 26 26 H 1.08998 * 109.47506 * 59.99841 * 12 11 10 27 27 H 1.09000 * 109.47057 * 299.99741 * 12 11 10 28 28 H 1.07997 * 119.98420 * 0.02562 * 14 13 12 29 29 H 1.08002 * 119.99636 * 179.72646 * 15 14 13 30 30 H 1.07999 * 120.00577 * 180.25936 * 16 15 14 31 31 H 1.08003 * 120.00423 * 0.02562 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0001 11 7 5.4905 -2.6365 0.0001 12 6 6.0170 -4.0079 -0.0004 13 6 7.5235 -3.9677 0.0003 14 6 8.2148 -3.9428 -1.1969 15 6 9.5966 -3.9118 -1.1971 16 6 10.2880 -3.8939 -0.0002 17 6 9.5968 -3.9129 1.1979 18 17 10.4645 -3.8911 2.7014 19 6 8.2136 -3.9499 1.1975 20 1 -0.4850 0.8401 -0.0004 21 1 3.8752 -0.6796 0.8894 22 1 3.8745 -0.6807 -0.8905 23 1 3.6579 -3.1505 -0.8897 24 1 3.6586 -3.1502 0.8902 25 1 5.8522 -2.1104 -0.7813 26 1 5.6676 -4.5310 -0.8905 27 1 5.6675 -4.5315 0.8894 28 1 7.6749 -3.9519 -2.1322 29 1 10.1362 -3.8969 -2.1326 30 1 11.3676 -3.8654 -0.0005 31 1 7.6734 -3.9652 2.1326 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049773028.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:19 Heat of formation + Delta-G solvation = 4.706157 kcal Electronic energy + Delta-G solvation = -13843.167191 eV Core-core repulsion = 11342.618894 eV Total energy + Delta-G solvation = -2500.548297 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.56365 -36.76129 -35.97178 -33.16997 -31.72488 -30.87122 -29.41201 -25.71893 -23.32816 -22.82494 -21.32836 -20.38586 -17.13039 -16.78129 -15.96037 -15.66682 -14.96010 -14.45186 -14.09333 -13.88736 -13.68223 -13.29367 -12.75054 -12.59564 -12.30779 -11.60466 -11.60080 -11.52055 -11.28814 -11.02233 -10.91751 -10.10276 -9.90666 -9.81343 -9.25600 -9.03773 -8.84454 -8.54388 -8.01175 -6.05231 -4.03906 1.00029 1.12351 1.98263 3.31921 3.39698 3.45530 3.45944 4.45926 4.52597 4.63330 4.82283 4.93701 5.12921 5.16111 5.29414 5.33816 5.58804 5.72350 5.81514 6.06540 6.13177 6.15570 6.21213 6.41605 6.64238 6.73433 7.07712 7.34306 7.54923 7.70361 7.85737 8.51691 8.98514 9.57123 11.08044 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.035292 B = 0.004172 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.182721 B = 6709.712500 C = 6930.906846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.010 4.010 10 C 0.073 3.927 11 N -0.689 5.689 12 C 0.094 3.906 13 C -0.061 4.061 14 C -0.111 4.111 15 C -0.109 4.109 16 C -0.117 4.117 17 C -0.035 4.035 18 Cl -0.076 7.076 19 C -0.089 4.089 20 H 0.263 0.737 21 H 0.026 0.974 22 H 0.009 0.991 23 H 0.023 0.977 24 H 0.066 0.934 25 H 0.337 0.663 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.119 -9.061 -0.658 22.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.561 4.561 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.055 4.055 11 N -0.320 5.320 12 C -0.035 4.035 13 C -0.062 4.062 14 C -0.130 4.130 15 C -0.127 4.127 16 C -0.136 4.136 17 C -0.062 4.062 18 Cl -0.047 7.047 19 C -0.108 4.108 20 H 0.073 0.927 21 H 0.044 0.956 22 H 0.027 0.973 23 H 0.042 0.958 24 H 0.085 0.915 25 H 0.154 0.846 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.145 0.855 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 21.058 -8.878 0.174 22.854 hybrid contribution 0.234 0.671 -0.810 1.078 sum 21.293 -8.207 -0.637 22.828 Atomic orbital electron populations 1.69916 1.06330 1.26951 1.51062 1.25002 0.94726 0.99214 0.94427 0.86755 0.80523 0.83435 0.78476 1.20379 1.21391 1.18745 1.21060 0.89337 0.94542 1.51136 0.91090 1.19549 0.96688 0.91739 0.96799 1.22000 0.83569 1.00258 0.99673 1.60670 1.10052 1.11364 1.49884 1.20912 0.88938 0.92070 1.01562 1.19904 0.96058 0.97927 0.92302 1.21213 0.94291 0.99474 0.97994 1.21062 0.94195 0.99930 0.97530 1.21014 1.00284 1.01400 0.90881 1.20930 0.92553 1.05642 0.87037 1.98367 1.76732 1.96986 1.32647 1.20984 0.91596 0.99084 0.99165 0.92703 0.95590 0.97284 0.95832 0.91537 0.84605 0.94291 0.90070 0.85535 0.85213 0.85239 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.52 -14.93 9.66 -34.44 -0.33 -15.27 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 10 C 0.07 1.44 5.62 -3.82 -0.02 1.42 16 11 N -0.69 -11.32 6.49 -115.06 -0.75 -12.07 16 12 C 0.09 1.25 5.81 -4.98 -0.03 1.22 16 13 C -0.06 -0.74 5.39 -104.63 -0.56 -1.30 16 14 C -0.11 -1.16 9.70 -39.58 -0.38 -1.55 16 15 C -0.11 -1.01 10.05 -39.59 -0.40 -1.41 16 16 C -0.12 -1.15 9.83 -39.55 -0.39 -1.54 16 17 C -0.04 -0.40 6.32 -39.50 -0.25 -0.65 16 18 Cl -0.08 -0.82 28.96 -51.86 -1.50 -2.32 16 19 C -0.09 -1.08 9.49 -39.55 -0.38 -1.45 16 20 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 21 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 22 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 25 H 0.34 5.27 8.72 -39.29 -0.34 4.93 16 26 H 0.04 0.49 8.09 -51.93 -0.42 0.07 16 27 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 28 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 30 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 31 H 0.14 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 283.75 15.07 4.28 4.28 Total: -1.00 -30.56 283.75 -8.90 -39.46 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -4.07 Total: -0.40 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -2.96 Total: -19.00 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.03 Total: -39.26 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.56 -8.90 -39.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049773028.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.168 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds