Wall clock time and date at job start Sun Mar 29 2020 22:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99858 * 2 1 4 4 H 1.48497 * 109.46833 * 269.99690 * 3 2 1 5 5 H 1.48505 * 109.46975 * 29.99851 * 3 2 1 6 6 H 1.48500 * 109.46927 * 149.99742 * 3 2 1 7 7 C 1.37872 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99886 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99978 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47072 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47058 * 180.02562 * 10 9 7 12 12 C 1.46896 * 111.00036 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47203 * 180.02562 * 12 11 10 14 14 C 1.38270 * 119.99101 * 270.27514 * 13 12 11 15 15 C 1.38215 * 120.02537 * 180.27948 * 14 13 12 16 16 C 1.38238 * 120.01126 * 359.44038 * 15 14 13 17 17 C 1.38325 * 119.98878 * 0.28199 * 16 15 14 18 18 Cl 1.73606 * 120.01335 * 179.97438 * 17 16 15 19 19 C 1.38193 * 119.99765 * 89.99917 * 13 12 11 20 20 H 0.97000 * 119.99713 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47335 * 60.00376 * 9 7 2 22 22 H 1.09003 * 109.47223 * 300.00428 * 9 7 2 23 23 H 1.09002 * 109.46911 * 60.00356 * 10 9 7 24 24 H 1.08994 * 109.47503 * 300.00193 * 10 9 7 25 25 H 1.00901 * 111.00004 * 303.95503 * 11 10 9 26 26 H 1.08998 * 109.47506 * 59.99841 * 12 11 10 27 27 H 1.09000 * 109.47057 * 299.99741 * 12 11 10 28 28 H 1.07997 * 119.98420 * 0.02562 * 14 13 12 29 29 H 1.08002 * 119.99636 * 179.72646 * 15 14 13 30 30 H 1.07999 * 120.00577 * 180.25936 * 16 15 14 31 31 H 1.08003 * 120.00423 * 0.02562 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0001 11 7 5.4905 -2.6365 0.0001 12 6 6.0170 -4.0079 -0.0004 13 6 7.5235 -3.9677 0.0003 14 6 8.2148 -3.9428 -1.1969 15 6 9.5966 -3.9118 -1.1971 16 6 10.2880 -3.8939 -0.0002 17 6 9.5968 -3.9129 1.1979 18 17 10.4645 -3.8911 2.7014 19 6 8.2136 -3.9499 1.1975 20 1 -0.4850 0.8401 -0.0004 21 1 3.8752 -0.6796 0.8894 22 1 3.8745 -0.6807 -0.8905 23 1 3.6579 -3.1505 -0.8897 24 1 3.6586 -3.1502 0.8902 25 1 5.8522 -2.1104 -0.7813 26 1 5.6676 -4.5310 -0.8905 27 1 5.6675 -4.5315 0.8894 28 1 7.6749 -3.9519 -2.1322 29 1 10.1362 -3.8969 -2.1326 30 1 11.3676 -3.8654 -0.0005 31 1 7.6734 -3.9652 2.1326 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049773028.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:19 Heat of formation + Delta-G solvation = -14.216937 kcal Electronic energy + Delta-G solvation = -13843.987758 eV Core-core repulsion = 11342.618894 eV Total energy + Delta-G solvation = -2501.368864 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.39859 -37.76309 -37.17411 -35.07655 -33.16754 -31.69362 -30.94939 -27.14421 -24.89567 -23.62231 -22.41988 -22.03471 -18.95908 -17.98143 -17.02996 -16.53447 -16.33734 -16.02004 -15.51070 -15.13192 -14.69207 -14.51891 -14.26888 -14.03353 -13.62798 -13.09234 -12.89813 -12.50188 -12.38421 -12.30638 -11.94240 -11.86617 -11.75573 -11.54703 -11.42895 -10.76844 -9.89230 -9.68681 -9.31502 -8.30032 -6.34665 0.18631 0.31305 1.16421 1.36636 1.39652 1.52487 2.36921 2.62289 3.05762 3.43213 3.75520 3.91808 4.13201 4.25684 4.32491 4.43253 4.51550 4.56485 4.69502 4.85580 4.95761 4.98198 5.26679 5.28495 5.38369 5.47859 5.55875 5.63563 5.85628 6.08967 6.24753 6.49586 6.74031 7.30540 8.86622 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.035292 B = 0.004172 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.182721 B = 6709.712500 C = 6930.906846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.953 3.047 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.250 1.250 7 C -0.534 4.534 8 H 0.033 0.967 9 C -0.005 4.005 10 C 0.087 3.913 11 N -0.691 5.691 12 C 0.098 3.902 13 C -0.075 4.075 14 C -0.113 4.113 15 C -0.104 4.104 16 C -0.116 4.116 17 C -0.047 4.047 18 Cl -0.077 7.077 19 C -0.104 4.104 20 H 0.267 0.733 21 H 0.021 0.979 22 H 0.019 0.981 23 H 0.023 0.977 24 H 0.057 0.943 25 H 0.343 0.657 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.142 0.858 29 H 0.161 0.839 30 H 0.150 0.850 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.710 -8.513 -1.628 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.776 3.224 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.173 1.173 7 C -0.573 4.573 8 H 0.052 0.948 9 C -0.043 4.043 10 C -0.042 4.042 11 N -0.322 5.322 12 C -0.031 4.031 13 C -0.075 4.075 14 C -0.131 4.131 15 C -0.122 4.122 16 C -0.134 4.134 17 C -0.074 4.074 18 Cl -0.048 7.048 19 C -0.124 4.124 20 H 0.076 0.924 21 H 0.039 0.961 22 H 0.038 0.962 23 H 0.041 0.959 24 H 0.075 0.925 25 H 0.161 0.839 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.160 0.840 29 H 0.179 0.821 30 H 0.168 0.832 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 23.671 -8.351 -0.799 25.114 hybrid contribution -0.564 0.400 -0.513 0.861 sum 23.108 -7.951 -1.312 24.473 Atomic orbital electron populations 1.70065 1.08296 1.28234 1.52544 1.25988 0.95596 1.03516 0.93976 0.85616 0.79375 0.78130 0.79258 1.18920 1.21013 1.17329 1.21415 0.91941 0.93258 1.50676 0.94846 1.19439 0.93533 0.94540 0.96771 1.21651 0.85891 0.97401 0.99272 1.60544 1.07621 1.13656 1.50412 1.20895 0.90036 0.90200 1.01958 1.19791 0.95088 0.99598 0.93054 1.21451 0.95058 0.98729 0.97906 1.21422 0.93818 0.98341 0.98570 1.21343 1.01449 1.00160 0.90478 1.21063 0.92395 1.06249 0.87675 1.98363 1.76578 1.97022 1.32858 1.21011 0.92230 1.00046 0.99077 0.92426 0.96096 0.96242 0.95921 0.92453 0.83864 0.93147 0.90398 0.84005 0.82148 0.83202 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.98 13.96 21.45 0.30 -59.69 16 2 C 0.01 0.36 5.47 84.65 0.46 0.83 16 3 Si 0.95 44.75 27.47 68.60 1.88 46.64 16 4 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 7 C -0.53 -31.07 9.66 25.60 0.25 -30.82 16 8 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 9 C -0.01 -0.24 4.30 29.85 0.13 -0.11 16 10 C 0.09 3.38 5.62 86.30 0.49 3.86 16 11 N -0.69 -21.75 6.49 -517.93 -3.36 -25.11 16 12 C 0.10 2.46 5.81 85.56 0.50 2.96 16 13 C -0.07 -1.67 5.39 -19.87 -0.11 -1.78 16 14 C -0.11 -2.05 9.70 22.27 0.22 -1.83 16 15 C -0.10 -1.57 10.05 22.26 0.22 -1.34 16 16 C -0.12 -1.95 9.83 22.29 0.22 -1.73 16 17 C -0.05 -0.99 6.32 22.32 0.14 -0.85 16 18 Cl -0.08 -1.56 28.96 -2.72 -0.08 -1.64 16 19 C -0.10 -2.42 9.49 22.29 0.21 -2.21 16 20 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 21 H 0.02 1.00 7.20 -2.39 -0.02 0.99 16 22 H 0.02 0.87 7.57 -2.39 -0.02 0.86 16 23 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.34 10.04 8.72 -89.69 -0.78 9.25 16 26 H 0.05 1.17 8.09 -2.39 -0.02 1.15 16 27 H 0.08 2.00 8.08 -2.39 -0.02 1.98 16 28 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 29 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 30 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 31 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -65.81 283.75 1.75 -64.06 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 0.28 Total: 8.77 kcal Atomic # 6 Polarization: -35.75 SS G_CDS: 2.73 Total: -33.03 kcal Atomic # 7 Polarization: -81.73 SS G_CDS: -3.06 Total: -84.80 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.64 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.08 Total: -1.64 kcal Total: -65.81 1.75 -64.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049773028.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.846 kcal (2) G-P(sol) polarization free energy of solvation -65.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds