Wall clock time and date at job start Sun Mar 29 2020 22:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47020 * 2 1 4 4 C 1.33811 * 124.52665 * 90.00334 * 3 2 1 5 5 C 1.37475 * 115.10378 * 180.02562 * 4 3 2 6 6 C 1.36654 * 113.29595 * 359.97438 * 5 4 3 7 7 C 1.46576 * 125.45688 * 179.97438 * 6 5 4 8 8 O 1.21704 * 120.00049 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99910 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99873 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.46928 * 179.97438 * 10 9 7 12 12 H 1.08003 * 119.99963 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99865 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00518 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99987 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46948 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47174 * 120.00320 * 15 13 11 18 18 H 1.48497 * 109.47378 * 240.00235 * 15 13 11 19 19 S 1.70622 * 124.52031 * 270.26803 * 3 2 1 20 20 H 1.08998 * 109.46740 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.47109 * 299.99997 * 1 2 3 22 22 H 1.08996 * 109.47283 * 60.00256 * 1 2 3 23 23 H 1.08998 * 109.47339 * 239.99920 * 2 1 3 24 24 H 1.08996 * 109.47283 * 119.99744 * 2 1 3 25 25 H 1.07999 * 122.45075 * 359.97167 * 4 3 2 26 26 H 1.07997 * 123.35109 * 180.02562 * 5 4 3 27 27 H 0.96999 * 120.00047 * 359.97438 * 9 7 6 28 28 H 1.09004 * 109.47073 * 299.99562 * 10 9 7 29 29 H 1.09000 * 109.47212 * 59.99645 * 10 9 7 30 30 H 0.96992 * 120.00316 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2851 2.1358 1.1024 5 6 2.7366 3.4147 0.8773 6 6 2.8459 3.7236 -0.4493 7 6 3.2992 5.0090 -0.9885 8 8 3.6156 5.9085 -0.2323 9 7 3.3646 5.1951 -2.3218 10 6 3.8182 6.4797 -2.8607 11 6 3.7999 6.4271 -4.3667 12 1 3.4818 5.5271 -4.8718 13 6 4.1883 7.5285 -5.0996 14 7 4.5752 8.6247 -4.4846 15 14 4.1664 7.4632 -6.9663 16 1 3.6950 6.1264 -7.4093 17 1 3.2494 8.5086 -7.4875 18 1 5.5366 7.7027 -7.4862 19 16 2.3484 2.3346 -1.4058 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 2.1440 1.7377 2.0964 26 1 2.9815 4.1060 1.6701 27 1 3.1120 4.4782 -2.9245 28 1 3.1545 7.2729 -2.5164 29 1 4.8329 6.6800 -2.5167 30 1 4.8488 9.3993 -5.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049826880.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:37 Heat of formation + Delta-G solvation = -25.418892 kcal Electronic energy + Delta-G solvation = -14028.637696 eV Core-core repulsion = 11528.826785 eV Total energy + Delta-G solvation = -2499.810911 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.02223 -37.67092 -34.25008 -33.77254 -32.35518 -29.05917 -27.17670 -25.08456 -22.86232 -22.31341 -20.60050 -19.07205 -17.75385 -16.41429 -15.75636 -15.14492 -14.83733 -14.54237 -14.34798 -14.03700 -13.66370 -13.07276 -12.68881 -12.29721 -12.14841 -12.01293 -11.66450 -11.64829 -11.26705 -10.95698 -10.91926 -10.75559 -10.33167 -9.40562 -9.30720 -8.77398 -8.57300 -8.50103 -7.91796 -6.17800 -4.24942 0.68673 1.57404 2.00598 2.56056 3.23549 3.30536 3.33832 3.80538 4.02440 4.36295 4.54702 4.82375 5.04738 5.18573 5.26290 5.38921 5.49472 5.55889 5.60272 5.76715 5.94865 6.08591 6.29017 6.46673 7.27095 7.34115 7.48536 7.63627 7.94028 8.53929 8.73598 8.99063 9.41408 10.92518 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.038800 B = 0.005159 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.472891 B = 5425.923837 C = 6048.397323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.053 4.053 3 C -0.207 4.207 4 C -0.150 4.150 5 C -0.069 4.069 6 C -0.246 4.246 7 C 0.570 3.430 8 O -0.544 6.544 9 N -0.705 5.705 10 C 0.249 3.751 11 C -0.544 4.544 12 H 0.064 0.936 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.905 3.095 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.282 1.282 19 S 0.198 5.802 20 H 0.060 0.940 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.139 0.861 26 H 0.151 0.849 27 H 0.388 0.612 28 H 0.031 0.969 29 H 0.031 0.969 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.637 -17.175 7.170 19.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 C -0.327 4.327 4 C -0.181 4.181 5 C -0.102 4.102 6 C -0.366 4.366 7 C 0.354 3.646 8 O -0.424 6.424 9 N -0.353 5.353 10 C 0.129 3.871 11 C -0.582 4.582 12 H 0.082 0.918 13 C -0.139 4.139 14 N -0.522 5.522 15 Si 0.732 3.268 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.207 1.207 19 S 0.465 5.535 20 H 0.079 0.921 21 H 0.078 0.922 22 H 0.077 0.923 23 H 0.092 0.908 24 H 0.099 0.901 25 H 0.157 0.843 26 H 0.168 0.832 27 H 0.221 0.779 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.436 -16.586 6.067 18.797 hybrid contribution 0.028 0.031 0.339 0.341 sum -6.408 -16.555 6.405 18.872 Atomic orbital electron populations 1.21807 0.94275 1.01905 1.02675 1.20099 0.96208 0.89622 1.03241 1.24199 1.08403 1.02002 0.98096 1.19896 1.04748 0.94181 0.99265 1.20712 0.97911 0.96208 0.95360 1.24991 1.14091 0.99655 0.97893 1.17046 0.78972 0.85236 0.83357 1.90786 1.50584 1.42755 1.58290 1.46416 1.65281 1.18727 1.04828 1.19195 0.95677 0.78885 0.93379 1.21244 1.46670 0.99886 0.90433 0.91792 1.24944 0.94658 0.94998 0.99331 1.69981 1.43161 1.03172 1.35906 0.86346 0.77835 0.78217 0.84441 1.19581 1.20756 1.20747 1.83047 1.59936 1.02861 1.07619 0.92087 0.92240 0.92296 0.90755 0.90087 0.84308 0.83164 0.77895 0.95151 0.95153 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.89 37.16 0.37 -0.76 16 2 C -0.05 -0.44 6.36 -27.88 -0.18 -0.62 16 3 C -0.21 -2.38 5.53 -35.86 -0.20 -2.57 16 4 C -0.15 -1.80 9.99 -41.41 -0.41 -2.22 16 5 C -0.07 -1.04 10.01 -40.43 -0.40 -1.44 16 6 C -0.25 -4.21 6.45 -36.79 -0.24 -4.44 16 7 C 0.57 12.42 7.78 -12.90 -0.10 12.32 16 8 O -0.54 -13.80 16.84 5.19 0.09 -13.71 16 9 N -0.70 -15.78 5.54 -62.83 -0.35 -16.13 16 10 C 0.25 6.74 5.43 -5.19 -0.03 6.71 16 11 C -0.54 -14.93 9.28 -34.44 -0.32 -15.25 16 12 H 0.06 1.65 7.60 -52.48 -0.40 1.25 16 13 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 14 N -0.88 -26.14 13.29 55.43 0.74 -25.40 16 15 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 S 0.20 2.63 22.10 -107.50 -2.38 0.25 16 20 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 21 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 26 H 0.15 2.20 8.06 -52.49 -0.42 1.77 16 27 H 0.39 7.63 7.43 -40.82 -0.30 7.33 16 28 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 281.27 15.07 4.24 4.24 Total: -1.00 -31.77 281.27 -7.93 -39.70 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -3.64 Total: 1.75 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -1.61 Total: -6.57 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.39 Total: -41.53 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.09 Total: -13.71 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -2.38 Total: 0.25 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.77 -7.93 -39.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049826880.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.284 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds