Wall clock time and date at job start Sun Mar 29 2020 22:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47020 * 2 1 4 4 C 1.33811 * 124.52665 * 90.00334 * 3 2 1 5 5 C 1.37475 * 115.10378 * 180.02562 * 4 3 2 6 6 C 1.36654 * 113.29595 * 359.97438 * 5 4 3 7 7 C 1.46576 * 125.45688 * 179.97438 * 6 5 4 8 8 O 1.21704 * 120.00049 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99910 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99873 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.46928 * 179.97438 * 10 9 7 12 12 H 1.08003 * 119.99963 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99865 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00518 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99987 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46948 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47174 * 120.00320 * 15 13 11 18 18 H 1.48497 * 109.47378 * 240.00235 * 15 13 11 19 19 S 1.70622 * 124.52031 * 270.26803 * 3 2 1 20 20 H 1.08998 * 109.46740 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.47109 * 299.99997 * 1 2 3 22 22 H 1.08996 * 109.47283 * 60.00256 * 1 2 3 23 23 H 1.08998 * 109.47339 * 239.99920 * 2 1 3 24 24 H 1.08996 * 109.47283 * 119.99744 * 2 1 3 25 25 H 1.07999 * 122.45075 * 359.97167 * 4 3 2 26 26 H 1.07997 * 123.35109 * 180.02562 * 5 4 3 27 27 H 0.96999 * 120.00047 * 359.97438 * 9 7 6 28 28 H 1.09004 * 109.47073 * 299.99562 * 10 9 7 29 29 H 1.09000 * 109.47212 * 59.99645 * 10 9 7 30 30 H 0.96992 * 120.00316 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2851 2.1358 1.1024 5 6 2.7366 3.4147 0.8773 6 6 2.8459 3.7236 -0.4493 7 6 3.2992 5.0090 -0.9885 8 8 3.6156 5.9085 -0.2323 9 7 3.3646 5.1951 -2.3218 10 6 3.8182 6.4797 -2.8607 11 6 3.7999 6.4271 -4.3667 12 1 3.4818 5.5271 -4.8718 13 6 4.1883 7.5285 -5.0996 14 7 4.5752 8.6247 -4.4846 15 14 4.1664 7.4632 -6.9663 16 1 3.6950 6.1264 -7.4093 17 1 3.2494 8.5086 -7.4875 18 1 5.5366 7.7027 -7.4862 19 16 2.3484 2.3346 -1.4058 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 2.1440 1.7377 2.0964 26 1 2.9815 4.1060 1.6701 27 1 3.1120 4.4782 -2.9245 28 1 3.1545 7.2729 -2.5164 29 1 4.8329 6.6800 -2.5167 30 1 4.8488 9.3993 -5.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049826880.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:36 Heat of formation + Delta-G solvation = -46.743635 kcal Electronic energy + Delta-G solvation = -14029.562407 eV Core-core repulsion = 11528.826785 eV Total energy + Delta-G solvation = -2500.735621 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.68027 -38.85101 -36.23859 -34.67890 -34.37698 -30.48557 -28.87069 -26.30498 -24.65319 -23.20386 -22.25364 -20.54943 -19.14841 -18.14239 -17.30229 -16.75555 -16.41173 -16.30822 -15.56679 -15.01873 -14.87719 -14.41605 -14.11835 -14.02584 -13.73832 -13.30151 -12.92628 -12.81864 -12.73375 -12.39483 -12.24198 -12.04663 -11.65689 -11.49699 -11.11970 -10.85649 -10.07569 -9.61675 -9.52855 -8.31789 -6.49327 -0.49683 0.45661 0.92791 1.41247 1.42763 1.44408 1.57983 2.19735 2.26108 2.47827 3.03233 3.72730 3.90999 4.17521 4.35569 4.43951 4.50610 4.82964 4.93222 4.99978 5.08235 5.16660 5.18275 5.23230 5.36788 5.38160 5.45487 5.59188 5.78664 6.58211 6.72347 7.15051 7.29610 8.80884 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.038800 B = 0.005159 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.472891 B = 5425.923837 C = 6048.397323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.055 4.055 3 C -0.180 4.180 4 C -0.159 4.159 5 C -0.054 4.054 6 C -0.302 4.302 7 C 0.569 3.431 8 O -0.594 6.594 9 N -0.703 5.703 10 C 0.266 3.734 11 C -0.559 4.559 12 H 0.083 0.917 13 C 0.006 3.994 14 N -0.930 5.930 15 Si 0.987 3.013 16 H -0.253 1.253 17 H -0.277 1.277 18 H -0.277 1.277 19 S 0.224 5.776 20 H 0.081 0.919 21 H 0.057 0.943 22 H 0.049 0.951 23 H 0.086 0.914 24 H 0.104 0.896 25 H 0.173 0.827 26 H 0.145 0.855 27 H 0.403 0.597 28 H -0.007 1.007 29 H -0.007 1.007 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.770 -20.504 6.407 22.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.300 4.300 4 C -0.188 4.188 5 C -0.088 4.088 6 C -0.422 4.422 7 C 0.357 3.643 8 O -0.478 6.478 9 N -0.351 5.351 10 C 0.143 3.857 11 C -0.597 4.597 12 H 0.101 0.899 13 C -0.194 4.194 14 N -0.568 5.568 15 Si 0.810 3.190 16 H -0.176 1.176 17 H -0.203 1.203 18 H -0.202 1.202 19 S 0.493 5.507 20 H 0.100 0.900 21 H 0.076 0.924 22 H 0.068 0.932 23 H 0.105 0.895 24 H 0.122 0.878 25 H 0.190 0.810 26 H 0.163 0.837 27 H 0.238 0.762 28 H 0.011 0.989 29 H 0.011 0.989 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.587 -19.964 5.299 22.005 hybrid contribution 0.332 0.943 0.700 1.220 sum -7.255 -19.021 5.999 21.224 Atomic orbital electron populations 1.21819 0.93442 1.03188 1.02216 1.20325 0.96734 0.87282 1.05050 1.24773 1.05210 1.03112 0.96904 1.20096 1.04846 0.92769 1.01111 1.20960 0.96058 0.97406 0.94394 1.24492 1.18817 0.99378 0.99522 1.17667 0.77496 0.86606 0.82527 1.90736 1.52715 1.45142 1.59172 1.46126 1.65737 1.17566 1.05691 1.18664 0.92785 0.80202 0.94015 1.21600 1.46876 1.00875 0.90334 0.89914 1.26074 0.93669 0.94259 1.05367 1.70138 1.43999 1.04193 1.38454 0.85072 0.77985 0.79056 0.76876 1.17626 1.20256 1.20243 1.82892 1.59182 1.00882 1.07783 0.90024 0.92361 0.93175 0.89505 0.87761 0.81003 0.83707 0.76185 0.98925 0.98919 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.89 71.98 0.71 -0.94 16 2 C -0.05 -0.66 6.36 29.85 0.19 -0.47 16 3 C -0.18 -3.51 5.53 24.68 0.14 -3.38 16 4 C -0.16 -3.35 9.99 21.08 0.21 -3.14 16 5 C -0.05 -1.58 10.01 21.72 0.22 -1.36 16 6 C -0.30 -10.43 6.45 24.08 0.16 -10.27 16 7 C 0.57 26.10 7.78 86.42 0.67 26.78 16 8 O -0.59 -32.25 16.84 -4.36 -0.07 -32.32 16 9 N -0.70 -32.87 5.54 -470.90 -2.61 -35.49 16 10 C 0.27 15.25 5.43 85.63 0.46 15.72 16 11 C -0.56 -31.27 9.28 25.60 0.24 -31.04 16 12 H 0.08 4.21 7.60 -2.91 -0.02 4.19 16 13 C 0.01 0.35 5.46 84.65 0.46 0.81 16 14 N -0.93 -56.63 13.29 21.45 0.28 -56.35 16 15 Si 0.99 42.65 29.54 68.60 2.03 44.68 16 16 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 17 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 18 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 19 S 0.22 5.57 22.10 -56.49 -1.25 4.32 16 20 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 21 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 22 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 23 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 26 H 0.15 4.30 8.06 -2.91 -0.02 4.27 16 27 H 0.40 16.12 7.43 -92.71 -0.69 15.43 16 28 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 29 H -0.01 -0.46 8.14 -2.39 -0.02 -0.47 16 30 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -72.55 281.27 2.29 -70.26 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.46 Total: 12.20 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 3.46 Total: -7.31 kcal Atomic # 7 Polarization: -89.50 SS G_CDS: -2.33 Total: -91.83 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.07 Total: -32.32 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: 5.57 SS G_CDS: -1.25 Total: 4.32 kcal Total: -72.55 2.29 -70.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049826880.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.515 kcal (2) G-P(sol) polarization free energy of solvation -72.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds