Wall clock time and date at job start Sun Mar 29 2020 22:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08005 * 120.00291 * 114.36412 * 4 2 1 6 6 C 1.37881 * 120.00259 * 294.36743 * 4 2 1 7 7 N 1.31514 * 120.00212 * 156.61898 * 6 4 2 8 8 Si 1.86795 * 119.99775 * 336.88788 * 6 4 2 9 9 H 1.48501 * 109.47165 * 179.72704 * 8 6 4 10 10 H 1.48500 * 109.47318 * 299.72681 * 8 6 4 11 11 H 1.48500 * 109.47076 * 59.72783 * 8 6 4 12 12 N 1.46498 * 109.46908 * 240.00405 * 2 1 3 13 13 C 1.34776 * 119.99973 * 85.00105 * 12 2 1 14 14 O 1.21275 * 120.00093 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99964 * 179.97438 * 13 12 2 16 16 C 1.50703 * 109.47394 * 180.02562 * 15 13 12 17 17 C 1.33382 * 125.20570 * 89.99432 * 16 15 13 18 18 C 1.38423 * 114.92341 * 179.97438 * 17 16 15 19 19 C 1.33390 * 114.91626 * 0.02562 * 18 17 16 20 20 S 1.75879 * 109.59492 * 359.75183 * 19 18 17 21 21 H 1.09007 * 109.46955 * 53.09808 * 1 2 3 22 22 H 1.08994 * 109.47507 * 173.10064 * 1 2 3 23 23 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 24 24 H 0.97003 * 119.99433 * 355.20223 * 7 6 4 25 25 H 0.96999 * 119.99673 * 264.99382 * 12 2 1 26 26 H 1.09007 * 109.46983 * 299.99861 * 15 13 12 27 27 H 1.08994 * 109.47412 * 59.99878 * 15 13 12 28 28 H 1.08008 * 122.54136 * 359.96516 * 17 16 15 29 29 H 1.07994 * 122.53952 * 180.02562 * 18 17 16 30 30 H 1.08001 * 125.19794 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5761 -1.6386 1.1339 6 6 1.7976 -0.1756 2.4794 7 7 1.8026 -0.9539 3.5395 8 14 1.4651 1.6531 2.6649 9 1 1.2392 1.9724 4.0975 10 1 2.6331 2.4218 2.1647 11 1 0.2588 2.0190 1.8800 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8590 1.1587 -2.4114 15 6 2.6498 -0.7283 -3.5875 16 6 2.7010 0.2402 -4.7410 17 6 3.7506 0.9976 -5.0631 18 6 3.5651 1.8129 -6.1663 19 6 2.3645 1.7178 -6.7397 20 16 1.3882 0.5397 -5.8724 21 1 -0.3633 0.6171 -0.8218 22 1 -0.3634 -1.0201 -0.1234 23 1 -0.3633 0.4033 0.9453 24 1 1.9020 -1.9133 3.4363 25 1 2.2490 -1.6317 -1.1527 26 1 3.6492 -1.1201 -3.3980 27 1 1.9777 -1.5505 -3.8327 28 1 4.6753 0.9766 -4.5053 29 1 4.3340 2.4756 -6.5348 30 1 2.0428 2.2755 -7.6069 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336433.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:13 Heat of formation + Delta-G solvation = -13.263332 kcal Electronic energy + Delta-G solvation = -14469.523175 eV Core-core repulsion = 11970.239369 eV Total energy + Delta-G solvation = -2499.283806 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.20336 -37.53270 -34.94857 -32.55500 -31.99643 -29.59357 -26.86473 -24.84139 -23.32865 -21.02716 -19.58763 -19.16460 -17.85759 -16.99263 -16.31727 -15.57281 -14.98002 -14.63715 -13.74979 -13.20652 -12.98801 -12.92606 -12.56829 -12.46691 -12.27836 -12.09859 -11.67600 -11.45721 -11.26054 -10.68547 -10.49282 -10.11556 -9.84369 -9.30938 -9.15087 -8.54535 -8.36950 -8.30279 -8.17078 -6.60595 -4.21478 1.06466 1.71283 2.07514 2.82018 3.23523 3.40730 3.45806 3.61464 4.05932 4.43797 4.74104 5.08112 5.10700 5.21384 5.43006 5.48587 5.63514 5.69287 6.17535 6.34586 6.39851 6.54510 6.56542 6.68408 6.97162 7.29632 7.40134 7.67055 8.23621 8.47472 8.69881 8.97657 9.44385 10.77746 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.047179 B = 0.005450 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.343384 B = 5136.714901 C = 5230.401680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.244 3.756 3 H 0.040 0.960 4 C -0.625 4.625 5 H 0.062 0.938 6 C 0.046 3.954 7 N -0.890 5.890 8 Si 1.033 2.967 9 H -0.283 1.283 10 H -0.281 1.281 11 H -0.274 1.274 12 N -0.703 5.703 13 C 0.502 3.498 14 O -0.545 6.545 15 C -0.076 4.076 16 C -0.142 4.142 17 C -0.136 4.136 18 C -0.130 4.130 19 C -0.222 4.222 20 S 0.101 5.899 21 H 0.029 0.971 22 H 0.043 0.957 23 H 0.058 0.942 24 H 0.271 0.729 25 H 0.393 0.607 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.596 0.668 -17.957 18.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.140 3.860 3 H 0.058 0.942 4 C -0.662 4.662 5 H 0.080 0.920 6 C -0.162 4.162 7 N -0.522 5.522 8 Si 0.860 3.140 9 H -0.208 1.208 10 H -0.207 1.207 11 H -0.200 1.200 12 N -0.352 5.352 13 C 0.285 3.715 14 O -0.423 6.423 15 C -0.118 4.118 16 C -0.260 4.260 17 C -0.166 4.166 18 C -0.161 4.161 19 C -0.358 4.358 20 S 0.365 5.635 21 H 0.048 0.952 22 H 0.062 0.938 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.226 0.774 26 H 0.126 0.874 27 H 0.117 0.883 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.357 2.141 -17.006 17.144 hybrid contribution 1.836 -1.130 -0.931 2.349 sum 1.479 1.010 -17.938 18.027 Atomic orbital electron populations 1.22421 0.98954 0.99906 1.00135 1.18977 0.90490 0.94137 0.82381 0.94230 1.22009 1.42028 1.11166 0.91012 0.91960 1.25627 0.92948 1.05864 0.91736 1.70874 1.43054 1.06425 1.31867 0.84186 0.77796 0.75756 0.76239 1.20830 1.20682 1.19975 1.46281 1.65283 1.13724 1.09870 1.20322 0.78939 0.87686 0.84524 1.90672 1.50757 1.15875 1.85028 1.20249 1.04293 0.96754 0.90514 1.23846 0.96918 1.04270 1.00991 1.20058 1.00056 0.97844 0.98650 1.20096 0.97543 1.01425 0.97004 1.25525 0.98167 1.05960 1.06106 1.84144 1.17962 1.38523 1.22909 0.95227 0.93822 0.92293 0.91955 0.77410 0.87353 0.88294 0.84484 0.84539 0.82191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 9.20 37.16 0.34 -3.23 16 2 C 0.24 5.91 2.16 -69.09 -0.15 5.76 16 3 H 0.04 1.05 6.15 -51.93 -0.32 0.73 16 4 C -0.62 -16.88 8.95 -34.44 -0.31 -17.19 16 5 H 0.06 1.75 7.96 -52.48 -0.42 1.33 16 6 C 0.05 1.29 5.19 -17.82 -0.09 1.20 16 7 N -0.89 -26.33 13.70 55.43 0.76 -25.58 16 8 Si 1.03 25.23 26.44 -169.99 -4.50 20.73 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.36 6.14 56.52 0.35 -6.01 16 12 N -0.70 -14.14 5.07 -54.94 -0.28 -14.41 16 13 C 0.50 9.55 7.79 -10.98 -0.09 9.47 16 14 O -0.55 -12.54 15.70 5.56 0.09 -12.45 16 15 C -0.08 -1.05 6.19 -29.03 -0.18 -1.23 16 16 C -0.14 -2.05 5.00 -36.00 -0.18 -2.23 16 17 C -0.14 -1.85 10.05 -41.21 -0.41 -2.26 16 18 C -0.13 -1.57 10.18 -41.21 -0.42 -1.99 16 19 C -0.22 -2.60 11.23 29.04 0.33 -2.27 16 20 S 0.10 1.33 23.33 -107.50 -2.51 -1.18 16 21 H 0.03 0.65 8.14 -51.92 -0.42 0.22 16 22 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.06 1.39 5.47 -51.93 -0.28 1.11 16 24 H 0.27 7.89 8.73 -40.82 -0.36 7.53 16 25 H 0.39 6.87 8.53 -40.82 -0.35 6.52 16 26 H 0.11 1.23 8.14 -51.92 -0.42 0.81 16 27 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.14 1.69 8.06 -52.48 -0.42 1.27 16 29 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 30 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 274.12 15.07 4.13 4.13 Total: -1.00 -31.86 274.12 -7.00 -38.86 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -3.54 Total: 3.87 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -1.16 Total: -13.98 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.48 Total: -39.99 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.45 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -4.50 Total: 20.73 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.51 Total: -1.18 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.86 -7.00 -38.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336433.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.600 kcal (2) G-P(sol) polarization free energy of solvation -31.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds