Wall clock time and date at job start Sun Mar 29 2020 22:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 N 1.46491 * 109.47268 * 120.00149 * 2 1 3 13 13 C 1.34780 * 120.00170 * 275.00492 * 12 2 1 14 14 O 1.21281 * 119.99806 * 359.97438 * 13 12 2 15 15 C 1.50700 * 120.00091 * 180.02562 * 13 12 2 16 16 C 1.50700 * 109.47131 * 179.97438 * 15 13 12 17 17 C 1.33385 * 125.20558 * 89.99408 * 16 15 13 18 18 C 1.38418 * 114.92419 * 179.97438 * 17 16 15 19 19 C 1.33394 * 114.92269 * 0.02562 * 18 17 16 20 20 S 1.75881 * 125.20101 * 269.69439 * 16 15 13 21 21 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 23 23 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 25 25 H 0.97002 * 120.00109 * 94.99223 * 12 2 1 26 26 H 1.09001 * 109.46940 * 299.99009 * 15 13 12 27 27 H 1.08999 * 109.47582 * 59.99209 * 15 13 12 28 28 H 1.08009 * 122.53931 * 359.95892 * 17 16 15 29 29 H 1.08001 * 122.54419 * 180.02562 * 18 17 16 30 30 H 1.07994 * 125.20727 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.3307 -2.1700 -4.4055 10 1 2.4720 -0.1516 -5.1155 11 1 3.6199 -1.7650 -3.7155 12 7 2.0183 -0.6906 1.1961 13 6 2.1470 -0.0183 2.3571 14 8 1.8589 1.1585 2.4115 15 6 2.6499 -0.7286 3.5874 16 6 2.7010 0.2398 4.7410 17 6 1.7035 0.4707 5.5959 18 6 1.9819 1.4051 6.5784 19 6 3.2054 1.9336 6.5211 20 16 4.0876 1.2329 5.1703 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7011 1.1560 -3.4844 25 1 2.2489 -1.6318 1.1525 26 1 1.9777 -1.5509 3.8325 27 1 3.6492 -1.1205 3.3978 28 1 0.7507 -0.0331 5.5266 29 1 1.2631 1.6852 7.3342 30 1 3.5962 2.6744 7.2028 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336436.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:15 Heat of formation + Delta-G solvation = -12.957980 kcal Electronic energy + Delta-G solvation = -14405.514950 eV Core-core repulsion = 11906.244385 eV Total energy + Delta-G solvation = -2499.270565 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.03353 -37.43319 -34.77924 -32.46273 -31.84536 -28.97184 -26.69443 -25.24563 -23.27034 -21.15749 -19.45421 -19.08005 -17.35838 -16.77074 -15.68587 -15.42778 -15.10445 -14.50498 -14.07452 -13.19682 -12.92130 -12.56632 -12.44779 -12.38996 -12.14227 -11.70390 -11.36702 -11.09505 -10.92458 -10.70259 -10.60255 -10.31847 -10.23251 -9.12525 -9.04178 -8.55624 -8.44172 -8.29154 -7.89873 -6.11993 -4.21436 1.14237 1.79280 2.15601 2.89185 3.24278 3.31175 3.33329 3.40605 4.16284 4.41153 4.83416 5.14741 5.20094 5.31403 5.55359 5.56786 5.70001 5.79395 6.24470 6.41971 6.62282 6.83267 6.97300 7.15998 7.47020 7.56832 7.69865 7.92242 8.15686 8.67092 8.78652 9.14039 9.46256 10.93950 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.053542 B = 0.004980 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.832930 B = 5621.631601 C = 5768.817298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.710 5.710 13 C 0.501 3.499 14 O -0.544 6.544 15 C -0.077 4.077 16 C -0.140 4.140 17 C -0.138 4.138 18 C -0.130 4.130 19 C -0.223 4.223 20 S 0.103 5.897 21 H 0.026 0.974 22 H 0.014 0.986 23 H 0.090 0.910 24 H 0.264 0.736 25 H 0.389 0.611 26 H 0.106 0.894 27 H 0.098 0.902 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.696 -3.269 14.797 15.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.358 5.358 13 C 0.284 3.716 14 O -0.422 6.422 15 C -0.119 4.119 16 C -0.258 4.258 17 C -0.168 4.168 18 C -0.161 4.161 19 C -0.359 4.359 20 S 0.367 5.633 21 H 0.045 0.955 22 H 0.033 0.967 23 H 0.108 0.892 24 H 0.074 0.926 25 H 0.221 0.779 26 H 0.124 0.876 27 H 0.116 0.884 28 H 0.154 0.846 29 H 0.154 0.846 30 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.857 -2.080 14.078 15.037 hybrid contribution -1.093 -1.017 -0.323 1.527 sum 3.764 -3.097 13.756 14.594 Atomic orbital electron populations 1.22074 0.98502 0.99062 1.00900 1.18737 0.91004 0.94001 0.79994 0.93411 1.21224 1.32379 1.13275 0.90338 0.92075 1.24897 0.94816 0.94955 0.99075 1.69909 1.35849 1.22467 1.23869 0.86442 0.79141 0.79283 0.82196 1.20548 1.21064 1.19851 1.46513 1.65323 1.13534 1.10450 1.20244 0.79186 0.87698 0.84455 1.90684 1.50643 1.15897 1.84946 1.20275 1.03844 0.96888 0.90913 1.23866 0.97682 1.03394 1.00860 1.20032 0.99629 1.00954 0.96187 1.20085 0.96804 0.98593 1.00641 1.25522 0.99217 1.07587 1.03581 1.84175 1.16305 1.37537 1.25316 0.95504 0.96674 0.89166 0.92578 0.77922 0.87558 0.88360 0.84574 0.84617 0.82244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.26 37.16 0.34 -3.34 16 2 C 0.26 6.78 2.56 -69.09 -0.18 6.60 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 4 C -0.53 -14.17 8.73 -34.44 -0.30 -14.47 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.05 11.31 55.43 0.63 -24.42 16 8 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.71 -14.70 5.07 -54.93 -0.28 -14.98 16 13 C 0.50 9.97 7.79 -10.98 -0.09 9.89 16 14 O -0.54 -13.24 15.70 5.56 0.09 -13.15 16 15 C -0.08 -1.10 6.19 -29.03 -0.18 -1.28 16 16 C -0.14 -2.10 5.00 -36.00 -0.18 -2.28 16 17 C -0.14 -1.94 10.05 -41.21 -0.41 -2.35 16 18 C -0.13 -1.64 10.18 -41.21 -0.42 -2.06 16 19 C -0.22 -2.75 11.23 29.04 0.33 -2.42 16 20 S 0.10 1.43 23.33 -107.50 -2.51 -1.07 16 21 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 23 H 0.09 2.46 6.06 -51.93 -0.31 2.15 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.39 6.80 8.54 -40.82 -0.35 6.45 16 26 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.14 1.72 8.06 -52.48 -0.42 1.30 16 29 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 30 H 0.16 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 277.52 15.07 4.18 4.18 Total: -1.00 -31.45 277.52 -7.65 -39.10 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -3.56 Total: 4.78 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -1.18 Total: -10.05 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.35 Total: -39.40 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.09 Total: -13.15 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.51 Total: -1.07 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.45 -7.65 -39.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336436.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.140 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds