Wall clock time and date at job start Sun Mar 29 2020 22:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 N 1.46491 * 109.47268 * 120.00149 * 2 1 3 13 13 C 1.34780 * 120.00170 * 275.00492 * 12 2 1 14 14 O 1.21281 * 119.99806 * 359.97438 * 13 12 2 15 15 C 1.50700 * 120.00091 * 180.02562 * 13 12 2 16 16 C 1.50700 * 109.47131 * 179.97438 * 15 13 12 17 17 C 1.33385 * 125.20558 * 89.99408 * 16 15 13 18 18 C 1.38418 * 114.92419 * 179.97438 * 17 16 15 19 19 C 1.33394 * 114.92269 * 0.02562 * 18 17 16 20 20 S 1.75881 * 125.20101 * 269.69439 * 16 15 13 21 21 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 23 23 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 25 25 H 0.97002 * 120.00109 * 94.99223 * 12 2 1 26 26 H 1.09001 * 109.46940 * 299.99009 * 15 13 12 27 27 H 1.08999 * 109.47582 * 59.99209 * 15 13 12 28 28 H 1.08009 * 122.53931 * 359.95892 * 17 16 15 29 29 H 1.08001 * 122.54419 * 180.02562 * 18 17 16 30 30 H 1.07994 * 125.20727 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.3307 -2.1700 -4.4055 10 1 2.4720 -0.1516 -5.1155 11 1 3.6199 -1.7650 -3.7155 12 7 2.0183 -0.6906 1.1961 13 6 2.1470 -0.0183 2.3571 14 8 1.8589 1.1585 2.4115 15 6 2.6499 -0.7286 3.5874 16 6 2.7010 0.2398 4.7410 17 6 1.7035 0.4707 5.5959 18 6 1.9819 1.4051 6.5784 19 6 3.2054 1.9336 6.5211 20 16 4.0876 1.2329 5.1703 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7011 1.1560 -3.4844 25 1 2.2489 -1.6318 1.1525 26 1 1.9777 -1.5509 3.8325 27 1 3.6492 -1.1205 3.3978 28 1 0.7507 -0.0331 5.5266 29 1 1.2631 1.6852 7.3342 30 1 3.5962 2.6744 7.2028 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336436.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:14 Heat of formation + Delta-G solvation = -33.495936 kcal Electronic energy + Delta-G solvation = -14406.405543 eV Core-core repulsion = 11906.244385 eV Total energy + Delta-G solvation = -2500.161158 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.62241 -38.53872 -36.67896 -34.33113 -33.15058 -30.78567 -27.89563 -27.32331 -24.43437 -22.90029 -21.19084 -20.12400 -19.01738 -18.01265 -17.46088 -17.03435 -16.45515 -16.04614 -15.68797 -14.82971 -14.42813 -14.07122 -13.74917 -13.66536 -13.44904 -13.24759 -12.96032 -12.85407 -12.70125 -12.39177 -12.26999 -12.13492 -11.63488 -11.09976 -10.79180 -10.58001 -9.73310 -9.53264 -9.33722 -8.17201 -6.34981 0.10347 0.77489 1.14493 1.45450 1.46314 1.56908 1.84045 1.87101 2.37915 2.74546 3.13302 3.70567 4.17871 4.24829 4.30396 4.54485 4.72558 4.75550 4.79545 4.92599 5.10183 5.24199 5.40834 5.44657 5.61493 5.63911 5.69942 5.91853 6.10611 6.73451 6.98900 7.33171 7.59114 8.89114 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.053542 B = 0.004980 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.832930 B = 5621.631601 C = 5768.817298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.270 3.730 3 H -0.005 1.005 4 C -0.546 4.546 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.263 1.263 12 N -0.706 5.706 13 C 0.497 3.503 14 O -0.593 6.593 15 C -0.063 4.063 16 C -0.169 4.169 17 C -0.142 4.142 18 C -0.142 4.142 19 C -0.215 4.215 20 S 0.075 5.925 21 H 0.042 0.958 22 H 0.011 0.989 23 H 0.065 0.935 24 H 0.265 0.735 25 H 0.407 0.593 26 H 0.140 0.860 27 H 0.123 0.877 28 H 0.147 0.853 29 H 0.163 0.837 30 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.195 -4.891 15.691 16.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.166 3.834 3 H 0.013 0.987 4 C -0.584 4.584 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.187 1.187 12 N -0.355 5.355 13 C 0.284 3.716 14 O -0.475 6.475 15 C -0.104 4.104 16 C -0.287 4.287 17 C -0.172 4.172 18 C -0.172 4.172 19 C -0.350 4.350 20 S 0.339 5.661 21 H 0.061 0.939 22 H 0.030 0.970 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.242 0.758 26 H 0.158 0.842 27 H 0.141 0.859 28 H 0.165 0.835 29 H 0.181 0.819 30 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 5.372 -3.749 15.000 16.368 hybrid contribution -1.266 -0.437 -0.516 1.435 sum 4.107 -4.186 14.484 15.626 Atomic orbital electron populations 1.21887 0.98349 0.99476 0.99446 1.18319 0.91096 0.91832 0.82113 0.98720 1.21565 1.32491 1.13622 0.90766 0.90700 1.25828 0.94863 0.95582 1.02423 1.70065 1.37059 1.24040 1.24582 0.85319 0.79011 0.78000 0.77847 1.19577 1.21353 1.18734 1.46259 1.65374 1.14323 1.09570 1.21216 0.77737 0.87229 0.85463 1.90658 1.52611 1.18367 1.85817 1.20235 1.05628 0.96920 0.87605 1.24032 0.98418 1.04542 1.01717 1.20385 0.99776 1.00908 0.96159 1.20418 0.97509 0.98263 1.01021 1.25908 0.98846 1.07418 1.02855 1.84226 1.16976 1.38239 1.26681 0.93933 0.97034 0.91659 0.92590 0.75767 0.84177 0.85928 0.83501 0.81949 0.79486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.79 9.26 71.98 0.67 -6.12 16 2 C 0.27 14.10 2.56 44.25 0.11 14.21 16 3 H -0.01 -0.32 7.58 -2.38 -0.02 -0.34 16 4 C -0.55 -28.88 8.73 25.60 0.22 -28.66 16 5 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 6 C 0.01 0.69 5.30 84.66 0.45 1.14 16 7 N -0.92 -53.15 11.31 21.45 0.24 -52.90 16 8 Si 0.97 41.91 29.54 68.60 2.03 43.93 16 9 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 10 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 12 N -0.71 -28.83 5.07 -446.10 -2.26 -31.09 16 13 C 0.50 19.58 7.79 87.66 0.68 20.26 16 14 O -0.59 -29.50 15.70 -3.03 -0.05 -29.54 16 15 C -0.06 -1.67 6.19 29.10 0.18 -1.49 16 16 C -0.17 -4.83 5.00 24.59 0.12 -4.71 16 17 C -0.14 -3.73 10.05 21.21 0.21 -3.52 16 18 C -0.14 -3.25 10.18 21.22 0.22 -3.03 16 19 C -0.21 -4.85 11.23 66.72 0.75 -4.10 16 20 S 0.08 2.03 23.33 -56.49 -1.32 0.71 16 21 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 22 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 23 H 0.06 3.67 6.06 -2.39 -0.01 3.65 16 24 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 25 H 0.41 13.51 8.54 -92.71 -0.79 12.72 16 26 H 0.14 2.77 8.14 -2.39 -0.02 2.75 16 27 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 28 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 29 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 30 H 0.19 3.03 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -69.40 277.52 2.61 -66.78 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.36 Total: 18.12 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: 3.62 Total: -16.01 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -2.02 Total: -84.00 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.05 Total: -29.54 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -1.32 Total: 0.71 kcal Total: -69.40 2.61 -66.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336436.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.287 kcal (2) G-P(sol) polarization free energy of solvation -69.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds