Wall clock time and date at job start Sun Mar 29 2020 22:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37474 * 123.35149 * 2 1 4 4 C 1.33814 * 115.10328 * 180.29412 * 3 2 1 5 5 S 1.70620 * 110.95356 * 359.73250 * 4 3 2 6 6 C 1.36650 * 123.35342 * 179.78580 * 2 1 3 7 7 C 1.46576 * 125.45714 * 359.97438 * 6 2 1 8 8 O 1.21709 * 120.00090 * 359.71687 * 7 6 2 9 9 N 1.34777 * 120.00011 * 179.71985 * 7 6 2 10 10 C 1.46506 * 120.00033 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.46566 * 324.99334 * 10 9 7 12 12 C 1.52997 * 109.47289 * 84.99600 * 10 9 7 13 13 C 1.50697 * 109.47015 * 205.00057 * 10 9 7 14 14 H 1.07998 * 120.00039 * 359.97438 * 13 10 9 15 15 C 1.37880 * 119.99815 * 179.97438 * 13 10 9 16 16 N 1.31508 * 119.99915 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99777 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.47152 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47204 * 119.99883 * 17 15 13 20 20 H 1.48496 * 109.47191 * 240.00215 * 17 15 13 21 21 H 1.09007 * 109.46653 * 270.21567 * 1 2 3 22 22 H 1.08998 * 109.47394 * 30.21185 * 1 2 3 23 23 H 1.08998 * 109.47253 * 150.22003 * 1 2 3 24 24 H 1.07999 * 122.45151 * 0.05170 * 3 2 1 25 25 H 1.08003 * 124.52600 * 179.74633 * 4 3 2 26 26 H 0.96992 * 119.99904 * 359.97438 * 9 7 6 27 27 H 1.09002 * 109.47153 * 179.97438 * 12 10 9 28 28 H 1.09001 * 109.46832 * 60.00146 * 12 10 9 29 29 H 1.09004 * 109.47261 * 300.00128 * 12 10 9 30 30 H 0.97001 * 119.99839 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1483 0.0000 4 6 3.5871 0.9564 -0.0062 5 16 3.9623 -0.7080 -0.0051 6 6 2.2583 -1.1414 0.0043 7 6 1.7285 -2.5081 0.0099 8 8 0.5258 -2.6945 0.0163 9 7 2.5732 -3.5583 0.0081 10 6 2.0436 -4.9243 0.0131 11 1 1.1302 -4.9576 0.6070 12 6 1.7354 -5.3571 -1.4216 13 6 3.0654 -5.8569 0.6107 14 1 4.0145 -5.4708 0.9522 15 6 2.7886 -7.2031 0.7216 16 7 1.6327 -7.6730 0.3062 17 14 4.0555 -8.3593 1.4617 18 1 5.2642 -7.5876 1.8475 19 1 3.4830 -9.0170 2.6637 20 1 4.4268 -9.3923 0.4617 21 1 -0.3633 0.0039 1.0277 22 1 -0.3634 0.8880 -0.5171 23 1 -0.3634 -0.8919 -0.5104 24 1 1.8201 2.1334 0.0008 25 1 4.3205 1.7492 -0.0111 26 1 3.5317 -3.4097 0.0026 27 1 1.3418 -6.3736 -1.4178 28 1 2.6489 -5.3238 -2.0153 29 1 0.9963 -4.6825 -1.8538 30 1 1.4379 -8.6200 0.3846 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336487.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:52 Heat of formation + Delta-G solvation = -15.911162 kcal Electronic energy + Delta-G solvation = -14637.167540 eV Core-core repulsion = 12137.768915 eV Total energy + Delta-G solvation = -2499.398625 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.22868 -37.52282 -34.77179 -32.42406 -30.74987 -29.41145 -27.31605 -25.25638 -23.46932 -21.84872 -19.84320 -18.74729 -17.84602 -16.37363 -15.37607 -15.22628 -14.77296 -14.51144 -13.95994 -13.23521 -13.09775 -12.89105 -12.42006 -12.19103 -11.95762 -11.69011 -11.56940 -11.08630 -10.97030 -10.73923 -10.72870 -10.30428 -10.24232 -9.11557 -9.05155 -8.67511 -8.55600 -8.31839 -7.92425 -6.13037 -4.22219 0.73442 1.65422 2.04511 2.56343 3.23944 3.31651 3.34625 3.83695 4.05843 4.38222 4.93418 5.19510 5.32323 5.38512 5.49759 5.75240 5.93622 6.04306 6.16470 6.49044 6.70292 6.83374 6.96409 7.13813 7.41911 7.54328 7.68423 7.90228 8.13402 8.61112 8.75985 9.04916 9.45061 10.93127 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.037986 B = 0.006304 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.931094 B = 4440.330241 C = 4953.575062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.040 4.040 3 C -0.145 4.145 4 C -0.243 4.243 5 S 0.191 5.809 6 C -0.251 4.251 7 C 0.574 3.426 8 O -0.539 6.539 9 N -0.702 5.702 10 C 0.264 3.736 11 H 0.052 0.948 12 C -0.147 4.147 13 C -0.534 4.534 14 H 0.062 0.938 15 C 0.066 3.934 16 N -0.883 5.883 17 Si 0.902 3.098 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 H 0.071 0.929 22 H 0.059 0.941 23 H 0.095 0.905 24 H 0.140 0.860 25 H 0.164 0.836 26 H 0.386 0.614 27 H 0.091 0.909 28 H 0.027 0.973 29 H 0.016 0.984 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.993 14.661 -1.180 15.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.054 4.054 3 C -0.177 4.177 4 C -0.381 4.381 5 S 0.459 5.541 6 C -0.372 4.372 7 C 0.359 3.641 8 O -0.420 6.420 9 N -0.350 5.350 10 C 0.163 3.837 11 H 0.069 0.931 12 C -0.206 4.206 13 C -0.572 4.572 14 H 0.080 0.920 15 C -0.137 4.137 16 N -0.520 5.520 17 Si 0.730 3.270 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.208 1.208 21 H 0.090 0.910 22 H 0.078 0.922 23 H 0.113 0.887 24 H 0.158 0.842 25 H 0.182 0.818 26 H 0.218 0.782 27 H 0.110 0.890 28 H 0.046 0.954 29 H 0.035 0.965 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.432 13.467 -1.194 14.228 hybrid contribution -0.017 0.445 0.385 0.589 sum 4.416 13.912 -0.809 14.618 Atomic orbital electron populations 1.20692 0.88856 1.03649 1.02843 1.19505 0.97865 0.90422 0.97629 1.19887 0.92614 0.99444 1.05777 1.25175 1.00544 1.01943 1.10392 1.83072 1.05104 0.97755 1.68191 1.24873 0.96584 0.98505 1.17242 1.16978 0.86713 0.82675 0.77777 1.90727 1.14381 1.85135 1.51712 1.46483 1.08620 1.07914 1.71951 1.18808 0.95800 0.74880 0.94198 0.93059 1.22085 0.98198 1.03079 0.97233 1.21246 1.01917 0.92489 1.41592 0.91994 1.24884 0.95640 0.98012 0.95134 1.69910 1.21825 1.14334 1.45978 0.86381 0.81200 0.80606 0.78855 1.19702 1.20838 1.20838 0.90997 0.92215 0.88655 0.84245 0.81828 0.78173 0.89009 0.95413 0.96527 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.47 9.55 36.01 0.34 -1.13 16 2 C -0.04 -0.61 5.90 -105.47 -0.62 -1.23 16 3 C -0.15 -1.79 9.97 -41.41 -0.41 -2.20 16 4 C -0.24 -2.77 10.92 29.18 0.32 -2.45 16 5 S 0.19 2.54 22.16 -107.50 -2.38 0.16 16 6 C -0.25 -4.33 6.45 -36.80 -0.24 -4.57 16 7 C 0.57 12.26 7.74 -12.90 -0.10 12.16 16 8 O -0.54 -13.03 13.91 5.18 0.07 -12.96 16 9 N -0.70 -15.43 5.06 -56.27 -0.29 -15.71 16 10 C 0.26 6.86 2.56 -69.08 -0.18 6.68 16 11 H 0.05 1.52 7.58 -51.93 -0.39 1.12 16 12 C -0.15 -3.71 9.26 37.16 0.34 -3.37 16 13 C -0.53 -14.32 8.73 -34.44 -0.30 -14.62 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 15 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 16 N -0.88 -24.92 11.32 55.43 0.63 -24.29 16 17 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.09 1.64 6.02 -51.93 -0.31 1.33 16 24 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 25 H 0.16 1.36 8.06 -52.48 -0.42 0.93 16 26 H 0.39 7.53 7.65 -40.82 -0.31 7.22 16 27 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 271.75 15.07 4.10 4.10 Total: -1.00 -30.01 271.75 -7.24 -37.26 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -3.41 Total: 4.81 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -0.94 Total: -9.02 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.34 Total: -40.00 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.07 Total: -12.96 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -2.38 Total: 0.16 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.01 -7.24 -37.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336487.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.345 kcal (2) G-P(sol) polarization free energy of solvation -30.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds