Wall clock time and date at job start Sun Mar 29 2020 22:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37474 * 123.35149 * 2 1 4 4 C 1.33814 * 115.10328 * 180.29412 * 3 2 1 5 5 S 1.70620 * 110.95356 * 359.73250 * 4 3 2 6 6 C 1.36650 * 123.35342 * 179.78580 * 2 1 3 7 7 C 1.46576 * 125.45714 * 359.97438 * 6 2 1 8 8 O 1.21709 * 120.00090 * 359.71687 * 7 6 2 9 9 N 1.34777 * 120.00011 * 179.71985 * 7 6 2 10 10 C 1.46506 * 120.00033 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.46566 * 324.99334 * 10 9 7 12 12 C 1.52997 * 109.47289 * 84.99600 * 10 9 7 13 13 C 1.50697 * 109.47015 * 205.00057 * 10 9 7 14 14 H 1.07998 * 120.00039 * 359.97438 * 13 10 9 15 15 C 1.37880 * 119.99815 * 179.97438 * 13 10 9 16 16 N 1.31508 * 119.99915 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99777 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.47152 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47204 * 119.99883 * 17 15 13 20 20 H 1.48496 * 109.47191 * 240.00215 * 17 15 13 21 21 H 1.09007 * 109.46653 * 270.21567 * 1 2 3 22 22 H 1.08998 * 109.47394 * 30.21185 * 1 2 3 23 23 H 1.08998 * 109.47253 * 150.22003 * 1 2 3 24 24 H 1.07999 * 122.45151 * 0.05170 * 3 2 1 25 25 H 1.08003 * 124.52600 * 179.74633 * 4 3 2 26 26 H 0.96992 * 119.99904 * 359.97438 * 9 7 6 27 27 H 1.09002 * 109.47153 * 179.97438 * 12 10 9 28 28 H 1.09001 * 109.46832 * 60.00146 * 12 10 9 29 29 H 1.09004 * 109.47261 * 300.00128 * 12 10 9 30 30 H 0.97001 * 119.99839 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1483 0.0000 4 6 3.5871 0.9564 -0.0062 5 16 3.9623 -0.7080 -0.0051 6 6 2.2583 -1.1414 0.0043 7 6 1.7285 -2.5081 0.0099 8 8 0.5258 -2.6945 0.0163 9 7 2.5732 -3.5583 0.0081 10 6 2.0436 -4.9243 0.0131 11 1 1.1302 -4.9576 0.6070 12 6 1.7354 -5.3571 -1.4216 13 6 3.0654 -5.8569 0.6107 14 1 4.0145 -5.4708 0.9522 15 6 2.7886 -7.2031 0.7216 16 7 1.6327 -7.6730 0.3062 17 14 4.0555 -8.3593 1.4617 18 1 5.2642 -7.5876 1.8475 19 1 3.4830 -9.0170 2.6637 20 1 4.4268 -9.3923 0.4617 21 1 -0.3633 0.0039 1.0277 22 1 -0.3634 0.8880 -0.5171 23 1 -0.3634 -0.8919 -0.5104 24 1 1.8201 2.1334 0.0008 25 1 4.3205 1.7492 -0.0111 26 1 3.5317 -3.4097 0.0026 27 1 1.3418 -6.3736 -1.4178 28 1 2.6489 -5.3238 -2.0153 29 1 0.9963 -4.6825 -1.8538 30 1 1.4379 -8.6200 0.3846 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336487.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:52 Heat of formation + Delta-G solvation = -35.490703 kcal Electronic energy + Delta-G solvation = -14638.016573 eV Core-core repulsion = 12137.768915 eV Total energy + Delta-G solvation = -2500.247658 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.78120 -38.79308 -36.68779 -34.38709 -31.94848 -31.16427 -28.72406 -27.36339 -24.64242 -23.43740 -21.64849 -20.26709 -19.04064 -18.19195 -17.11405 -16.72878 -16.25728 -16.05230 -15.47496 -14.65509 -14.60835 -14.40327 -14.07512 -13.69351 -13.30302 -13.04576 -12.96525 -12.88273 -12.72221 -12.64651 -12.31061 -12.12471 -11.79028 -11.13181 -10.82159 -10.61093 -9.99661 -9.61654 -9.36090 -8.19717 -6.37670 -0.41130 0.56124 1.01498 1.44155 1.44724 1.48054 1.57441 2.27211 2.32868 2.56584 3.10817 3.96346 4.02343 4.29853 4.44952 4.69023 4.72607 4.79847 4.88656 5.02789 5.04975 5.11323 5.35247 5.43476 5.53047 5.62079 5.64490 5.85960 6.05791 6.68360 6.84901 7.26961 7.43077 8.87177 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.037986 B = 0.006304 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.931094 B = 4440.330241 C = 4953.575062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.032 4.032 3 C -0.156 4.156 4 C -0.212 4.212 5 S 0.214 5.786 6 C -0.309 4.309 7 C 0.570 3.430 8 O -0.582 6.582 9 N -0.703 5.703 10 C 0.271 3.729 11 H 0.003 0.997 12 C -0.133 4.133 13 C -0.549 4.549 14 H 0.072 0.928 15 C 0.015 3.985 16 N -0.916 5.916 17 Si 0.975 3.025 18 H -0.260 1.260 19 H -0.282 1.282 20 H -0.276 1.276 21 H 0.073 0.927 22 H 0.093 0.907 23 H 0.060 0.940 24 H 0.174 0.826 25 H 0.207 0.793 26 H 0.398 0.602 27 H 0.070 0.930 28 H 0.040 0.960 29 H 0.012 0.988 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.365 16.864 -0.956 18.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.048 4.048 3 C -0.186 4.186 4 C -0.349 4.349 5 S 0.483 5.517 6 C -0.429 4.429 7 C 0.358 3.642 8 O -0.465 6.465 9 N -0.351 5.351 10 C 0.168 3.832 11 H 0.020 0.980 12 C -0.192 4.192 13 C -0.587 4.587 14 H 0.090 0.910 15 C -0.185 4.185 16 N -0.555 5.555 17 Si 0.799 3.201 18 H -0.184 1.184 19 H -0.208 1.208 20 H -0.202 1.202 21 H 0.091 0.909 22 H 0.112 0.888 23 H 0.078 0.922 24 H 0.192 0.808 25 H 0.224 0.776 26 H 0.233 0.767 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.031 0.969 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.836 15.698 -0.975 17.150 hybrid contribution -0.772 -0.100 0.310 0.838 sum 6.064 15.599 -0.665 16.749 Atomic orbital electron populations 1.20684 0.89053 1.03545 1.02872 1.19877 0.98233 0.91066 0.95589 1.20108 0.92728 0.99668 1.06129 1.25730 1.01112 1.01602 1.06474 1.82953 1.01798 0.99308 1.67688 1.24496 0.99670 0.96436 1.22298 1.17554 0.86126 0.84221 0.76284 1.90695 1.16161 1.86240 1.53398 1.46221 1.09374 1.06789 1.72734 1.18421 0.94093 0.77145 0.93553 0.97959 1.21902 0.98453 1.01594 0.97256 1.21540 1.02281 0.93019 1.41906 0.91029 1.25815 0.97608 0.99697 0.95351 1.70054 1.23751 1.14817 1.46840 0.85253 0.78758 0.78239 0.77832 1.18403 1.20799 1.20194 0.90885 0.88784 0.92153 0.80822 0.77636 0.76729 0.91118 0.94114 0.96874 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.94 9.55 71.24 0.68 -2.26 16 2 C -0.03 -0.92 5.90 -20.42 -0.12 -1.04 16 3 C -0.16 -3.20 9.97 21.08 0.21 -2.99 16 4 C -0.21 -3.81 10.92 66.81 0.73 -3.08 16 5 S 0.21 5.18 22.16 -56.49 -1.25 3.93 16 6 C -0.31 -10.56 6.45 24.07 0.16 -10.40 16 7 C 0.57 25.37 7.74 86.42 0.67 26.04 16 8 O -0.58 -29.98 13.91 -4.38 -0.06 -30.04 16 9 N -0.70 -31.89 5.06 -450.16 -2.28 -34.17 16 10 C 0.27 14.66 2.56 44.24 0.11 14.78 16 11 H 0.00 0.16 7.58 -2.39 -0.02 0.14 16 12 C -0.13 -7.00 9.26 71.98 0.67 -6.33 16 13 C -0.55 -29.90 8.73 25.60 0.22 -29.68 16 14 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 15 C 0.02 0.84 5.30 84.66 0.45 1.29 16 16 N -0.92 -53.11 11.32 21.45 0.24 -52.87 16 17 Si 0.97 42.37 29.54 68.60 2.03 44.39 16 18 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 21 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 22 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.06 2.18 6.02 -2.39 -0.01 2.16 16 24 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 25 H 0.21 2.02 8.06 -2.91 -0.02 1.99 16 26 H 0.40 15.72 7.65 -92.71 -0.71 15.01 16 27 H 0.07 4.00 6.07 -2.39 -0.01 3.99 16 28 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -68.22 271.75 2.90 -65.32 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.45 Total: 17.12 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 3.78 Total: -13.68 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -2.04 Total: -87.04 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.06 Total: -30.04 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: 5.18 SS G_CDS: -1.25 Total: 3.93 kcal Total: -68.22 2.90 -65.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336487.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.825 kcal (2) G-P(sol) polarization free energy of solvation -68.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds