Wall clock time and date at job start Sun Mar 29 2020 22:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33814 * 124.52225 * 2 1 4 4 C 1.37475 * 115.10326 * 180.02562 * 3 2 1 5 5 C 1.36652 * 113.29531 * 0.02562 * 4 3 2 6 6 C 1.46584 * 125.45815 * 179.97438 * 5 4 3 7 7 O 1.21702 * 119.99955 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99934 * 180.02562 * 6 5 4 9 9 C 1.46494 * 120.00241 * 180.02562 * 8 6 5 10 10 H 1.09006 * 109.46728 * 324.99634 * 9 8 6 11 11 C 1.52994 * 109.47734 * 84.99242 * 9 8 6 12 12 C 1.50703 * 109.47275 * 204.99947 * 9 8 6 13 13 H 1.07999 * 119.99636 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99690 * 179.97438 * 12 9 8 15 15 N 1.31507 * 120.00407 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99358 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47559 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47035 * 120.00123 * 16 14 12 19 19 H 1.48504 * 109.47139 * 240.00061 * 16 14 12 20 20 S 1.70613 * 124.52374 * 180.02562 * 2 1 3 21 21 H 1.08998 * 109.47730 * 89.99989 * 1 2 3 22 22 H 1.09000 * 109.47041 * 210.00416 * 1 2 3 23 23 H 1.09002 * 109.47412 * 329.99763 * 1 2 3 24 24 H 1.07999 * 122.45084 * 0.02562 * 3 2 1 25 25 H 1.07998 * 123.35225 * 179.72591 * 4 3 2 26 26 H 0.97008 * 119.99839 * 359.97438 * 8 6 5 27 27 H 1.08994 * 109.47645 * 180.02562 * 11 9 8 28 28 H 1.09007 * 109.47100 * 300.00515 * 11 9 8 29 29 H 1.08999 * 109.46825 * 59.99996 * 11 9 8 30 30 H 0.97002 * 120.00059 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2653 1.1025 0.0000 4 6 3.6215 0.8775 -0.0006 5 6 3.9492 -0.4491 -0.0016 6 6 5.3123 -0.9883 -0.0029 7 8 6.2658 -0.2320 -0.0027 8 7 5.5096 -2.3216 -0.0043 9 6 6.8718 -2.8605 -0.0051 10 1 7.5192 -2.2107 -0.5940 11 6 7.3927 -2.9326 1.4317 12 6 6.8652 -4.2421 -0.6070 13 1 5.9388 -4.6754 -0.9539 14 6 8.0418 -4.9527 -0.7148 15 7 9.1699 -4.4247 -0.2929 16 14 8.0333 -6.6654 -1.4603 17 1 6.6480 -7.0270 -1.8545 18 1 8.9103 -6.6881 -2.6585 19 1 8.5351 -7.6427 -0.4610 20 16 2.4739 -1.4057 -0.0006 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5139 24 1 1.8429 2.0964 0.0004 25 1 4.3549 1.6703 -0.0049 26 1 4.7495 -2.9243 -0.0041 27 1 8.4063 -3.3332 1.4311 28 1 7.3975 -1.9333 1.8670 29 1 6.7453 -3.5823 2.0206 30 1 9.9976 -4.9248 -0.3684 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336493.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:28 Heat of formation + Delta-G solvation = -18.151186 kcal Electronic energy + Delta-G solvation = -14384.620084 eV Core-core repulsion = 11885.124324 eV Total energy + Delta-G solvation = -2499.495760 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.04344 -37.53275 -34.78495 -32.47612 -31.91841 -29.20534 -26.80360 -25.25791 -23.53799 -21.85706 -19.87554 -19.04216 -17.72718 -16.39787 -15.62542 -15.18604 -14.68480 -14.46916 -13.97809 -13.79558 -13.26273 -12.92346 -12.45163 -12.32716 -12.05696 -11.79883 -11.65877 -11.08885 -10.96704 -10.80219 -10.74459 -10.31133 -10.24372 -9.25977 -9.05298 -8.58582 -8.52637 -8.49537 -7.93555 -6.12873 -4.22208 0.69995 1.58411 2.01098 2.57296 3.24061 3.31710 3.34694 3.84500 4.04215 4.37976 4.73227 5.07985 5.19634 5.31500 5.36752 5.49019 5.60223 5.78139 6.07922 6.29780 6.47493 6.82472 6.95672 7.13612 7.40344 7.53740 7.68076 7.89899 8.13162 8.59899 8.75519 9.03473 9.45005 10.93304 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.039794 B = 0.005799 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.449470 B = 4827.346027 C = 5334.699711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.213 4.213 3 C -0.152 4.152 4 C -0.070 4.070 5 C -0.245 4.245 6 C 0.573 3.427 7 O -0.543 6.543 8 N -0.702 5.702 9 C 0.264 3.736 10 H 0.052 0.948 11 C -0.147 4.147 12 C -0.534 4.534 13 H 0.062 0.938 14 C 0.067 3.933 15 N -0.883 5.883 16 Si 0.903 3.097 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 S 0.196 5.804 21 H 0.074 0.926 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.139 0.861 25 H 0.151 0.849 26 H 0.386 0.614 27 H 0.092 0.908 28 H 0.016 0.984 29 H 0.027 0.973 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.832 6.072 1.090 16.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.333 4.333 3 C -0.183 4.183 4 C -0.103 4.103 5 C -0.366 4.366 6 C 0.357 3.643 7 O -0.423 6.423 8 N -0.349 5.349 9 C 0.162 3.838 10 H 0.069 0.931 11 C -0.206 4.206 12 C -0.572 4.572 13 H 0.080 0.920 14 C -0.137 4.137 15 N -0.520 5.520 16 Si 0.730 3.270 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.208 1.208 20 S 0.463 5.537 21 H 0.093 0.907 22 H 0.087 0.913 23 H 0.094 0.906 24 H 0.157 0.843 25 H 0.168 0.832 26 H 0.219 0.781 27 H 0.110 0.890 28 H 0.035 0.965 29 H 0.046 0.954 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.222 4.966 1.103 16.050 hybrid contribution -0.034 0.411 -0.369 0.553 sum -15.256 5.377 0.734 16.192 Atomic orbital electron populations 1.20335 0.87750 1.03146 1.02770 1.24177 1.01294 0.98140 1.09640 1.19913 0.92727 0.99270 1.06426 1.20717 0.95969 0.95398 0.98187 1.25038 0.97549 0.97852 1.16124 1.17028 0.86015 0.83463 0.77823 1.90780 1.41594 1.58272 1.51672 1.46483 1.11842 1.04710 1.71854 1.18824 0.76751 0.93960 0.94235 0.93066 1.22084 1.03843 0.97477 0.97202 1.21238 0.94589 0.99999 1.41414 0.91979 1.24883 0.95208 0.98439 0.95131 1.69911 0.98628 1.37623 1.45862 0.86377 0.78186 0.83573 0.78867 1.19702 1.20842 1.20834 1.83047 0.94697 1.07589 1.68332 0.90704 0.91276 0.90622 0.84284 0.83162 0.78135 0.88978 0.96536 0.95369 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.31 36.00 0.37 -0.28 16 2 C -0.21 -2.47 6.28 -35.86 -0.23 -2.70 16 3 C -0.15 -1.86 9.99 -41.41 -0.41 -2.28 16 4 C -0.07 -1.06 10.01 -40.43 -0.40 -1.47 16 5 C -0.24 -4.23 6.45 -36.79 -0.24 -4.46 16 6 C 0.57 12.46 7.75 -12.89 -0.10 12.36 16 7 O -0.54 -13.73 16.50 5.19 0.09 -13.64 16 8 N -0.70 -15.55 5.06 -56.28 -0.28 -15.83 16 9 C 0.26 6.89 2.56 -69.09 -0.18 6.72 16 10 H 0.05 1.53 7.58 -51.93 -0.39 1.14 16 11 C -0.15 -3.75 9.26 37.15 0.34 -3.40 16 12 C -0.53 -14.35 8.73 -34.44 -0.30 -14.65 16 13 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 14 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 15 N -0.88 -24.98 11.32 55.43 0.63 -24.36 16 16 Si 0.90 20.71 29.54 -169.99 -5.02 15.68 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 S 0.20 2.63 22.10 -107.50 -2.38 0.25 16 21 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 25 H 0.15 2.22 8.06 -52.49 -0.42 1.80 16 26 H 0.39 7.56 7.65 -40.82 -0.31 7.25 16 27 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 276.67 15.07 4.17 4.17 Total: -1.00 -30.77 276.67 -7.56 -38.33 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -3.52 Total: 3.86 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -1.24 Total: -8.46 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.34 Total: -40.19 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.09 Total: -13.64 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -2.38 Total: 0.25 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.77 -7.56 -38.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336493.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.178 kcal (2) G-P(sol) polarization free energy of solvation -30.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds