Wall clock time and date at job start Sun Mar 29 2020 22:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33814 * 124.52225 * 2 1 4 4 C 1.37475 * 115.10326 * 180.02562 * 3 2 1 5 5 C 1.36652 * 113.29531 * 0.02562 * 4 3 2 6 6 C 1.46584 * 125.45815 * 179.97438 * 5 4 3 7 7 O 1.21702 * 119.99955 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99934 * 180.02562 * 6 5 4 9 9 C 1.46494 * 120.00241 * 180.02562 * 8 6 5 10 10 H 1.09006 * 109.46728 * 324.99634 * 9 8 6 11 11 C 1.52994 * 109.47734 * 84.99242 * 9 8 6 12 12 C 1.50703 * 109.47275 * 204.99947 * 9 8 6 13 13 H 1.07999 * 119.99636 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99690 * 179.97438 * 12 9 8 15 15 N 1.31507 * 120.00407 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99358 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47559 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47035 * 120.00123 * 16 14 12 19 19 H 1.48504 * 109.47139 * 240.00061 * 16 14 12 20 20 S 1.70613 * 124.52374 * 180.02562 * 2 1 3 21 21 H 1.08998 * 109.47730 * 89.99989 * 1 2 3 22 22 H 1.09000 * 109.47041 * 210.00416 * 1 2 3 23 23 H 1.09002 * 109.47412 * 329.99763 * 1 2 3 24 24 H 1.07999 * 122.45084 * 0.02562 * 3 2 1 25 25 H 1.07998 * 123.35225 * 179.72591 * 4 3 2 26 26 H 0.97008 * 119.99839 * 359.97438 * 8 6 5 27 27 H 1.08994 * 109.47645 * 180.02562 * 11 9 8 28 28 H 1.09007 * 109.47100 * 300.00515 * 11 9 8 29 29 H 1.08999 * 109.46825 * 59.99996 * 11 9 8 30 30 H 0.97002 * 120.00059 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2653 1.1025 0.0000 4 6 3.6215 0.8775 -0.0006 5 6 3.9492 -0.4491 -0.0016 6 6 5.3123 -0.9883 -0.0029 7 8 6.2658 -0.2320 -0.0027 8 7 5.5096 -2.3216 -0.0043 9 6 6.8718 -2.8605 -0.0051 10 1 7.5192 -2.2107 -0.5940 11 6 7.3927 -2.9326 1.4317 12 6 6.8652 -4.2421 -0.6070 13 1 5.9388 -4.6754 -0.9539 14 6 8.0418 -4.9527 -0.7148 15 7 9.1699 -4.4247 -0.2929 16 14 8.0333 -6.6654 -1.4603 17 1 6.6480 -7.0270 -1.8545 18 1 8.9103 -6.6881 -2.6585 19 1 8.5351 -7.6427 -0.4610 20 16 2.4739 -1.4057 -0.0006 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5139 24 1 1.8429 2.0964 0.0004 25 1 4.3549 1.6703 -0.0049 26 1 4.7495 -2.9243 -0.0041 27 1 8.4063 -3.3332 1.4311 28 1 7.3975 -1.9333 1.8670 29 1 6.7453 -3.5823 2.0206 30 1 9.9976 -4.9248 -0.3684 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336493.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:28 Heat of formation + Delta-G solvation = -38.291277 kcal Electronic energy + Delta-G solvation = -14385.493424 eV Core-core repulsion = 11885.124324 eV Total energy + Delta-G solvation = -2500.369100 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.70019 -38.72045 -36.74112 -34.41573 -32.99077 -31.06069 -28.00585 -27.36362 -24.64963 -23.43988 -21.70083 -20.49872 -19.11415 -18.10697 -17.26794 -16.77052 -16.34020 -16.02302 -15.44261 -14.81427 -14.65381 -14.46805 -13.94732 -13.77768 -13.36481 -13.05465 -12.96710 -12.82545 -12.76577 -12.65633 -12.31859 -12.12934 -11.83162 -11.14715 -11.03723 -10.63773 -9.98282 -9.57248 -9.50545 -8.19926 -6.38193 -0.46859 0.48146 0.93891 1.43678 1.44973 1.45281 1.57891 2.25328 2.31047 2.53428 3.10643 3.86686 3.96969 4.30602 4.43085 4.69321 4.72530 4.78198 4.87182 5.02959 5.09185 5.12001 5.22120 5.37598 5.46045 5.52725 5.62212 5.83717 6.04098 6.67032 6.80299 7.24175 7.39660 8.87071 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.039794 B = 0.005799 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.449470 B = 4827.346027 C = 5334.699711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.186 4.186 3 C -0.164 4.164 4 C -0.057 4.057 5 C -0.302 4.302 6 C 0.571 3.429 7 O -0.593 6.593 8 N -0.700 5.700 9 C 0.269 3.731 10 H 0.002 0.998 11 C -0.134 4.134 12 C -0.549 4.549 13 H 0.073 0.927 14 C 0.016 3.984 15 N -0.917 5.917 16 Si 0.976 3.024 17 H -0.260 1.260 18 H -0.282 1.282 19 H -0.276 1.276 20 S 0.222 5.778 21 H 0.092 0.908 22 H 0.081 0.919 23 H 0.097 0.903 24 H 0.173 0.827 25 H 0.144 0.856 26 H 0.400 0.600 27 H 0.071 0.929 28 H 0.011 0.989 29 H 0.042 0.958 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.142 5.503 0.853 19.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.306 4.306 3 C -0.193 4.193 4 C -0.091 4.091 5 C -0.422 4.422 6 C 0.358 3.642 7 O -0.477 6.477 8 N -0.348 5.348 9 C 0.166 3.834 10 H 0.020 0.980 11 C -0.193 4.193 12 C -0.587 4.587 13 H 0.091 0.909 14 C -0.185 4.185 15 N -0.555 5.555 16 Si 0.800 3.200 17 H -0.183 1.183 18 H -0.208 1.208 19 H -0.202 1.202 20 S 0.490 5.510 21 H 0.110 0.890 22 H 0.100 0.900 23 H 0.116 0.884 24 H 0.190 0.810 25 H 0.162 0.838 26 H 0.234 0.766 27 H 0.090 0.910 28 H 0.030 0.970 29 H 0.061 0.939 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.578 4.388 0.871 19.109 hybrid contribution 0.870 0.689 -0.293 1.148 sum -17.708 5.077 0.579 18.431 Atomic orbital electron populations 1.20563 0.84530 1.04883 1.04368 1.24779 1.03177 0.96880 1.05746 1.20124 0.91126 1.01163 1.06904 1.20962 0.97616 0.94476 0.96076 1.24570 0.96732 0.99448 1.21445 1.17604 0.87681 0.82722 0.76147 1.90731 1.43969 1.59156 1.53848 1.46213 1.10743 1.05462 1.72380 1.18461 0.78120 0.93157 0.93670 0.98035 1.21906 1.02886 0.97274 0.97187 1.21525 0.95280 1.00162 1.41768 0.90922 1.25823 0.94657 1.02646 0.95336 1.70055 0.99337 1.39358 1.46714 0.85234 0.78664 0.78245 0.77808 1.18345 1.20830 1.20180 1.82888 0.92557 1.07770 1.67834 0.88964 0.90044 0.88418 0.81007 0.83837 0.76555 0.91031 0.96965 0.93933 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 10.31 71.23 0.73 -0.20 16 2 C -0.19 -3.62 6.28 24.68 0.15 -3.47 16 3 C -0.16 -3.50 9.99 21.08 0.21 -3.29 16 4 C -0.06 -1.69 10.01 21.72 0.22 -1.48 16 5 C -0.30 -10.44 6.45 24.08 0.16 -10.29 16 6 C 0.57 25.90 7.75 86.42 0.67 26.57 16 7 O -0.59 -31.89 16.50 -4.35 -0.07 -31.96 16 8 N -0.70 -32.01 5.06 -450.17 -2.28 -34.29 16 9 C 0.27 14.66 2.56 44.25 0.11 14.77 16 10 H 0.00 0.11 7.58 -2.38 -0.02 0.09 16 11 C -0.13 -7.06 9.26 71.98 0.67 -6.39 16 12 C -0.55 -29.91 8.73 25.60 0.22 -29.68 16 13 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 14 C 0.02 0.85 5.30 84.66 0.45 1.30 16 15 N -0.92 -53.17 11.32 21.45 0.24 -52.93 16 16 Si 0.98 42.30 29.54 68.60 2.03 44.33 16 17 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 20 S 0.22 5.50 22.10 -56.49 -1.25 4.26 16 21 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 22 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 25 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 26 H 0.40 15.78 7.65 -92.70 -0.71 15.07 16 27 H 0.07 4.07 6.07 -2.39 -0.01 4.05 16 28 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -69.42 276.67 2.71 -66.71 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.44 Total: 16.04 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: 3.59 Total: -12.16 kcal Atomic # 7 Polarization: -85.18 SS G_CDS: -2.04 Total: -87.22 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -0.07 Total: -31.96 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: 5.50 SS G_CDS: -1.25 Total: 4.26 kcal Total: -69.42 2.71 -66.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336493.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.423 kcal (2) G-P(sol) polarization free energy of solvation -69.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds