Wall clock time and date at job start Sun Mar 29 2020 22:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33814 * 124.52272 * 2 1 4 4 C 1.37475 * 115.10512 * 180.02562 * 3 2 1 5 5 C 1.36647 * 113.29177 * 359.97438 * 4 3 2 6 6 C 1.46586 * 125.45581 * 179.97438 * 5 4 3 7 7 O 1.21703 * 119.99820 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00162 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00003 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47159 * 35.00178 * 9 8 6 11 11 C 1.52999 * 109.46941 * 274.99838 * 9 8 6 12 12 C 1.50701 * 109.47177 * 154.99929 * 9 8 6 13 13 H 1.08001 * 119.99793 * 34.99987 * 12 9 8 14 14 C 1.37873 * 120.00424 * 215.00301 * 12 9 8 15 15 N 1.31507 * 120.00294 * 184.91851 * 14 12 9 16 16 Si 1.86797 * 119.99736 * 4.91339 * 14 12 9 17 17 H 1.48503 * 109.47214 * 84.83399 * 16 14 12 18 18 H 1.48502 * 109.47442 * 204.83520 * 16 14 12 19 19 H 1.48499 * 109.47323 * 324.83613 * 16 14 12 20 20 S 1.70620 * 124.52374 * 179.69940 * 2 1 3 21 21 H 1.09004 * 109.47253 * 90.00402 * 1 2 3 22 22 H 1.08992 * 109.47348 * 329.99884 * 1 2 3 23 23 H 1.09000 * 109.46845 * 209.99998 * 1 2 3 24 24 H 1.08002 * 122.44639 * 359.97252 * 3 2 1 25 25 H 1.07997 * 123.35327 * 179.97438 * 4 3 2 26 26 H 0.96999 * 120.00101 * 0.02562 * 8 6 5 27 27 H 1.09000 * 109.47137 * 55.04193 * 11 9 8 28 28 H 1.09007 * 109.46864 * 175.03946 * 11 9 8 29 29 H 1.08990 * 109.47362 * 295.03432 * 11 9 8 30 30 H 0.97000 * 120.00118 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8775 -0.0006 5 6 3.9493 -0.4491 -0.0005 6 6 5.3124 -0.9882 -0.0015 7 8 6.2659 -0.2319 -0.0021 8 7 5.5097 -2.3214 -0.0007 9 6 6.8720 -2.8602 -0.0012 10 1 7.5198 -2.2107 0.5874 11 6 7.3916 -2.9319 -1.4385 12 6 6.8659 -4.2421 0.6002 13 1 6.0232 -4.8978 0.4380 14 6 7.9359 -4.6691 1.3574 15 7 7.9753 -5.9064 1.8012 16 14 9.3299 -3.4902 1.7530 17 1 8.9769 -2.6914 2.9541 18 1 10.5705 -4.2619 2.0188 19 1 9.5504 -2.5800 0.6005 20 16 2.4740 -1.4057 0.0074 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3633 0.8899 0.5138 23 1 -0.3633 -0.8900 0.5138 24 1 1.8428 2.0964 -0.0004 25 1 4.3550 1.6703 -0.0010 26 1 4.7498 -2.9242 0.0001 27 1 7.3135 -1.9486 -1.9025 28 1 8.4345 -3.2490 -1.4324 29 1 6.7971 -3.6490 -2.0044 30 1 8.7280 -6.2068 2.3343 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336495.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:30 Heat of formation + Delta-G solvation = -18.354475 kcal Electronic energy + Delta-G solvation = -14444.184034 eV Core-core repulsion = 11944.679459 eV Total energy + Delta-G solvation = -2499.504575 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.16383 -37.60090 -34.88032 -32.45786 -31.99210 -29.93556 -26.94711 -25.31814 -23.57736 -21.83894 -19.85917 -19.13300 -17.89867 -16.63184 -15.93704 -15.22077 -14.77330 -14.51313 -13.88100 -13.85425 -13.28979 -13.01183 -12.55965 -12.51596 -12.25376 -12.05673 -11.83017 -11.45070 -11.10700 -10.84548 -10.79760 -10.59298 -9.88988 -9.38386 -9.22259 -8.71956 -8.59999 -8.52356 -8.10928 -6.24488 -4.28627 0.65622 1.55305 1.98045 2.52674 3.26445 3.34176 3.41604 3.73561 3.93478 4.32119 4.70760 5.06310 5.11625 5.30026 5.33815 5.43317 5.56946 5.75959 6.04051 6.22647 6.35463 6.43496 6.51590 6.66292 6.91447 7.16648 7.34229 7.50462 8.09432 8.51140 8.74874 8.87407 9.37072 10.87111 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.040300 B = 0.006203 C = 0.005806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.622528 B = 4513.128784 C = 4821.394902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.211 4.211 3 C -0.154 4.154 4 C -0.068 4.068 5 C -0.249 4.249 6 C 0.573 3.427 7 O -0.548 6.548 8 N -0.697 5.697 9 C 0.231 3.769 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.532 4.532 13 H 0.079 0.921 14 C 0.083 3.917 15 N -0.887 5.887 16 Si 0.874 3.126 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.260 1.260 20 S 0.203 5.797 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.140 0.860 25 H 0.150 0.850 26 H 0.391 0.609 27 H 0.030 0.970 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.530 10.212 -3.760 17.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.331 4.331 3 C -0.185 4.185 4 C -0.101 4.101 5 C -0.370 4.370 6 C 0.358 3.642 7 O -0.429 6.429 8 N -0.345 5.345 9 C 0.129 3.871 10 H 0.070 0.930 11 C -0.207 4.207 12 C -0.570 4.570 13 H 0.097 0.903 14 C -0.122 4.122 15 N -0.524 5.524 16 Si 0.700 3.300 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.184 1.184 20 S 0.470 5.530 21 H 0.093 0.907 22 H 0.094 0.906 23 H 0.088 0.912 24 H 0.157 0.843 25 H 0.168 0.832 26 H 0.224 0.776 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.018 8.992 -3.639 16.235 hybrid contribution 0.657 1.802 0.308 1.943 sum -12.361 10.795 -3.331 16.746 Atomic orbital electron populations 1.20344 0.87695 1.03235 1.02789 1.24208 1.01366 0.98173 1.09351 1.19910 0.92701 0.99297 1.06559 1.20709 0.95991 0.95342 0.98051 1.24969 0.97527 0.97901 1.16584 1.17113 0.86164 0.83436 0.77514 1.90766 1.41714 1.58362 1.52024 1.46608 1.11391 1.04727 1.71776 1.19194 0.79128 0.94844 0.93960 0.92988 1.22221 1.00941 0.98918 0.98602 1.20991 1.06503 0.96855 1.32601 0.90258 1.24925 0.97903 0.95080 0.94305 1.69876 1.31570 1.15821 1.35089 0.86900 0.81692 0.81327 0.80059 1.19784 1.21101 1.18420 1.83115 0.94496 1.07362 1.68031 0.90672 0.90593 0.91191 0.84267 0.83203 0.77582 0.95124 0.92713 0.93308 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.31 36.01 0.37 -0.28 16 2 C -0.21 -2.41 6.28 -35.86 -0.23 -2.63 16 3 C -0.15 -1.83 9.99 -41.41 -0.41 -2.25 16 4 C -0.07 -1.01 10.01 -40.43 -0.40 -1.41 16 5 C -0.25 -4.18 6.45 -36.79 -0.24 -4.42 16 6 C 0.57 12.00 7.75 -12.90 -0.10 11.90 16 7 O -0.55 -13.20 16.50 5.19 0.09 -13.11 16 8 N -0.70 -14.92 5.06 -56.27 -0.28 -15.20 16 9 C 0.23 5.64 2.22 -69.08 -0.15 5.49 16 10 H 0.05 1.38 4.73 -51.93 -0.25 1.13 16 11 C -0.15 -3.31 9.47 37.16 0.35 -2.96 16 12 C -0.53 -14.44 9.05 -34.44 -0.31 -14.75 16 13 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 14 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 15 N -0.89 -26.13 13.96 55.43 0.77 -25.36 16 16 Si 0.87 21.69 26.99 -169.99 -4.59 17.10 16 17 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.26 -6.36 6.82 56.52 0.39 -5.97 16 20 S 0.20 2.68 22.10 -107.50 -2.38 0.30 16 21 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 25 H 0.15 2.14 8.06 -52.49 -0.42 1.72 16 26 H 0.39 7.51 7.71 -40.82 -0.31 7.19 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 276.41 15.07 4.17 4.17 Total: -1.00 -31.39 276.41 -6.96 -38.35 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -3.52 Total: 2.84 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -1.22 Total: -9.09 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.49 Total: -40.56 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.09 Total: -13.11 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.59 Total: 17.10 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -2.38 Total: 0.30 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.39 -6.96 -38.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336495.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.997 kcal (2) G-P(sol) polarization free energy of solvation -31.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds