Wall clock time and date at job start Sun Mar 29 2020 22:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33814 * 124.52272 * 2 1 4 4 C 1.37475 * 115.10512 * 180.02562 * 3 2 1 5 5 C 1.36647 * 113.29177 * 359.97438 * 4 3 2 6 6 C 1.46586 * 125.45581 * 179.97438 * 5 4 3 7 7 O 1.21703 * 119.99820 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00162 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00003 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47159 * 35.00178 * 9 8 6 11 11 C 1.52999 * 109.46941 * 274.99838 * 9 8 6 12 12 C 1.50701 * 109.47177 * 154.99929 * 9 8 6 13 13 H 1.08001 * 119.99793 * 34.99987 * 12 9 8 14 14 C 1.37873 * 120.00424 * 215.00301 * 12 9 8 15 15 N 1.31507 * 120.00294 * 184.91851 * 14 12 9 16 16 Si 1.86797 * 119.99736 * 4.91339 * 14 12 9 17 17 H 1.48503 * 109.47214 * 84.83399 * 16 14 12 18 18 H 1.48502 * 109.47442 * 204.83520 * 16 14 12 19 19 H 1.48499 * 109.47323 * 324.83613 * 16 14 12 20 20 S 1.70620 * 124.52374 * 179.69940 * 2 1 3 21 21 H 1.09004 * 109.47253 * 90.00402 * 1 2 3 22 22 H 1.08992 * 109.47348 * 329.99884 * 1 2 3 23 23 H 1.09000 * 109.46845 * 209.99998 * 1 2 3 24 24 H 1.08002 * 122.44639 * 359.97252 * 3 2 1 25 25 H 1.07997 * 123.35327 * 179.97438 * 4 3 2 26 26 H 0.96999 * 120.00101 * 0.02562 * 8 6 5 27 27 H 1.09000 * 109.47137 * 55.04193 * 11 9 8 28 28 H 1.09007 * 109.46864 * 175.03946 * 11 9 8 29 29 H 1.08990 * 109.47362 * 295.03432 * 11 9 8 30 30 H 0.97000 * 120.00118 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8775 -0.0006 5 6 3.9493 -0.4491 -0.0005 6 6 5.3124 -0.9882 -0.0015 7 8 6.2659 -0.2319 -0.0021 8 7 5.5097 -2.3214 -0.0007 9 6 6.8720 -2.8602 -0.0012 10 1 7.5198 -2.2107 0.5874 11 6 7.3916 -2.9319 -1.4385 12 6 6.8659 -4.2421 0.6002 13 1 6.0232 -4.8978 0.4380 14 6 7.9359 -4.6691 1.3574 15 7 7.9753 -5.9064 1.8012 16 14 9.3299 -3.4902 1.7530 17 1 8.9769 -2.6914 2.9541 18 1 10.5705 -4.2619 2.0188 19 1 9.5504 -2.5800 0.6005 20 16 2.4740 -1.4057 0.0074 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3633 0.8899 0.5138 23 1 -0.3633 -0.8900 0.5138 24 1 1.8428 2.0964 -0.0004 25 1 4.3550 1.6703 -0.0010 26 1 4.7498 -2.9242 0.0001 27 1 7.3135 -1.9486 -1.9025 28 1 8.4345 -3.2490 -1.4324 29 1 6.7971 -3.6490 -2.0044 30 1 8.7280 -6.2068 2.3343 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336495.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:29 Heat of formation + Delta-G solvation = -39.393102 kcal Electronic energy + Delta-G solvation = -14445.096338 eV Core-core repulsion = 11944.679459 eV Total energy + Delta-G solvation = -2500.416878 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.75036 -38.73521 -36.73907 -34.45516 -33.08956 -31.64072 -28.06164 -27.36062 -24.64045 -23.32524 -21.64642 -20.56453 -19.33336 -18.37031 -17.44942 -16.74417 -16.32033 -16.02465 -15.44457 -14.84720 -14.72582 -14.55114 -14.32400 -13.93161 -13.44384 -13.31075 -13.03862 -12.88604 -12.82651 -12.69823 -12.46939 -11.89862 -11.81904 -11.28544 -11.07913 -10.86085 -10.03875 -9.58101 -9.51842 -8.41654 -6.48748 -0.47288 0.48221 0.94158 1.28028 1.32504 1.43170 1.43593 2.22740 2.25062 2.33440 3.00661 3.85637 3.94459 4.30383 4.40863 4.43186 4.68516 4.71805 4.76965 4.77388 5.01415 5.09648 5.11878 5.22175 5.31689 5.40558 5.46170 5.62291 6.07321 6.54411 6.74105 7.14759 7.27606 8.73200 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.040300 B = 0.006203 C = 0.005806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.622528 B = 4513.128784 C = 4821.394902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.186 4.186 3 C -0.164 4.164 4 C -0.055 4.055 5 C -0.303 4.303 6 C 0.574 3.426 7 O -0.589 6.589 8 N -0.700 5.700 9 C 0.233 3.767 10 H 0.033 0.967 11 C -0.141 4.141 12 C -0.530 4.530 13 H 0.057 0.943 14 C 0.037 3.963 15 N -0.926 5.926 16 Si 0.925 3.075 17 H -0.275 1.275 18 H -0.273 1.273 19 H -0.256 1.256 20 S 0.216 5.784 21 H 0.093 0.907 22 H 0.097 0.903 23 H 0.079 0.921 24 H 0.173 0.827 25 H 0.147 0.853 26 H 0.400 0.600 27 H 0.036 0.964 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.526 11.759 -4.133 19.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.306 4.306 3 C -0.193 4.193 4 C -0.089 4.089 5 C -0.423 4.423 6 C 0.361 3.639 7 O -0.473 6.473 8 N -0.348 5.348 9 C 0.129 3.871 10 H 0.051 0.949 11 C -0.200 4.200 12 C -0.568 4.568 13 H 0.075 0.925 14 C -0.164 4.164 15 N -0.564 5.564 16 Si 0.750 3.250 17 H -0.200 1.200 18 H -0.198 1.198 19 H -0.180 1.180 20 S 0.483 5.517 21 H 0.111 0.889 22 H 0.116 0.884 23 H 0.098 0.902 24 H 0.190 0.810 25 H 0.165 0.835 26 H 0.235 0.765 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.041 10.529 -4.021 18.796 hybrid contribution 1.067 1.362 0.402 1.776 sum -13.975 11.892 -3.619 18.703 Atomic orbital electron populations 1.20562 0.84668 1.04791 1.04383 1.24775 1.03143 0.96902 1.05766 1.20140 0.91258 1.01083 1.06843 1.20965 0.97553 0.94464 0.95901 1.24565 0.96730 0.99360 1.21596 1.17561 0.87683 0.82593 0.76017 1.90721 1.43670 1.59013 1.53899 1.46350 1.10517 1.05516 1.72429 1.18990 0.80549 0.92878 0.94649 0.94912 1.22115 1.00930 0.99610 0.97348 1.21137 1.05609 0.97756 1.32299 0.92453 1.25572 1.00131 0.96240 0.94464 1.69963 1.32726 1.17311 1.36422 0.86073 0.79617 0.79599 0.79704 1.20049 1.19822 1.18016 1.83048 0.92953 1.07877 1.67819 0.88869 0.88445 0.90248 0.81005 0.83502 0.76504 0.94452 0.92829 0.92235 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 10.31 71.24 0.73 -0.22 16 2 C -0.19 -3.57 6.28 24.68 0.15 -3.42 16 3 C -0.16 -3.36 9.99 21.08 0.21 -3.15 16 4 C -0.05 -1.53 10.01 21.72 0.22 -1.31 16 5 C -0.30 -9.99 6.45 24.08 0.16 -9.84 16 6 C 0.57 24.30 7.75 86.42 0.67 24.97 16 7 O -0.59 -28.93 16.50 -4.36 -0.07 -29.00 16 8 N -0.70 -30.31 5.06 -450.17 -2.28 -32.59 16 9 C 0.23 11.48 2.22 44.25 0.10 11.58 16 10 H 0.03 1.75 4.73 -2.39 -0.01 1.74 16 11 C -0.14 -6.28 9.47 71.98 0.68 -5.60 16 12 C -0.53 -29.26 9.05 25.60 0.23 -29.02 16 13 H 0.06 3.35 8.06 -2.91 -0.02 3.33 16 14 C 0.04 2.10 5.47 84.65 0.46 2.56 16 15 N -0.93 -55.31 13.96 21.44 0.30 -55.01 16 16 Si 0.93 45.04 26.99 68.60 1.85 46.89 16 17 H -0.27 -13.39 7.11 99.48 0.71 -12.69 16 18 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 19 H -0.26 -12.21 6.82 99.48 0.68 -11.53 16 20 S 0.22 5.32 22.10 -56.49 -1.25 4.07 16 21 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 22 H 0.10 0.76 8.14 -2.39 -0.02 0.75 16 23 H 0.08 0.79 8.14 -2.39 -0.02 0.78 16 24 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 25 H 0.15 4.10 8.06 -2.91 -0.02 4.07 16 26 H 0.40 15.58 7.71 -92.71 -0.71 14.86 16 27 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 29 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -68.33 276.41 2.58 -65.75 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.41 Total: 13.33 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 3.62 Total: -13.46 kcal Atomic # 7 Polarization: -85.62 SS G_CDS: -1.98 Total: -87.60 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.07 Total: -29.00 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.85 Total: 46.89 kcal Atomic # 16 Polarization: 5.32 SS G_CDS: -1.25 Total: 4.07 kcal Total: -68.33 2.58 -65.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336495.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.357 kcal (2) G-P(sol) polarization free energy of solvation -68.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds