Wall clock time and date at job start Sun Mar 29 2020 22:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46987 * 2 1 4 4 C 1.50699 * 109.47497 * 240.00103 * 2 1 3 5 5 C 1.38264 * 119.99495 * 200.89083 * 4 2 1 6 6 C 1.38211 * 120.02782 * 179.97438 * 5 4 2 7 7 C 1.38244 * 120.01579 * 0.02562 * 6 5 4 8 8 C 1.38332 * 119.98238 * 359.76250 * 7 6 5 9 9 Cl 1.73594 * 120.01279 * 180.27450 * 8 7 6 10 10 C 1.38193 * 119.99317 * 20.91070 * 4 2 1 11 11 N 1.46501 * 109.47219 * 119.99435 * 2 1 3 12 12 C 1.46502 * 119.99735 * 63.78470 * 11 2 1 13 13 C 1.36931 * 120.00194 * 243.78226 * 11 2 1 14 14 H 1.08004 * 120.00146 * 351.89475 * 13 11 2 15 15 C 1.38819 * 119.99853 * 171.89236 * 13 11 2 16 16 N 1.31618 * 119.99941 * 5.44968 * 15 13 11 17 17 Si 1.86801 * 119.99686 * 185.44847 * 15 13 11 18 18 H 1.48495 * 109.47613 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46968 * 120.00335 * 17 15 13 20 20 H 1.48498 * 109.46997 * 239.99697 * 17 15 13 21 21 H 1.09001 * 109.47038 * 60.00308 * 1 2 3 22 22 H 1.08998 * 109.46519 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47288 * 300.00144 * 1 2 3 24 24 H 1.08005 * 119.98531 * 0.02562 * 5 4 2 25 25 H 1.08004 * 119.99378 * 180.02562 * 6 5 4 26 26 H 1.07990 * 120.00797 * 180.02562 * 7 6 5 27 27 H 1.08003 * 120.00386 * 359.97438 * 10 4 2 28 28 H 1.09005 * 109.47119 * 3.34671 * 12 11 2 29 29 H 1.09002 * 109.47179 * 123.33948 * 12 11 2 30 30 H 1.08999 * 109.47380 * 243.34703 * 12 11 2 31 31 H 0.96997 * 120.00108 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 6 3.3176 -1.2195 -1.2583 6 6 3.7789 -1.8716 -2.3862 7 6 2.9557 -2.0147 -3.4876 8 6 1.6683 -1.5094 -3.4587 9 17 0.6315 -1.6949 -4.8386 10 6 1.2087 -0.8524 -2.3309 11 7 2.0184 -0.6905 1.1962 12 6 1.7341 -2.1149 1.3871 13 6 2.7406 -0.0045 2.1359 14 1 3.0624 1.0070 1.9370 15 6 3.0589 -0.6093 3.3442 16 7 2.7609 -1.8755 3.5449 17 14 3.9102 0.3739 4.6850 18 1 4.1329 1.7644 4.2138 19 1 3.0577 0.3944 5.9008 20 1 5.2162 -0.2554 5.0069 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 3.9611 -1.1083 -0.3980 25 1 4.7828 -2.2694 -2.4072 26 1 3.3161 -2.5246 -4.3686 27 1 0.2048 -0.4547 -2.3089 28 1 1.2046 -2.4997 0.5155 29 1 2.6705 -2.6587 1.5125 30 1 1.1159 -2.2463 2.2751 31 1 2.9837 -2.2983 4.3891 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052162371.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:33 Heat of formation + Delta-G solvation = 31.718993 kcal Electronic energy + Delta-G solvation = -14950.083359 eV Core-core repulsion = 12450.706426 eV Total energy + Delta-G solvation = -2499.376933 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.54511 -37.94358 -37.11356 -34.48465 -32.06273 -31.26347 -29.77486 -28.06187 -25.67445 -23.64998 -23.19508 -20.89596 -18.90155 -18.01489 -17.00534 -16.30256 -16.12899 -15.67646 -15.10908 -14.66846 -14.52771 -14.33772 -14.02446 -13.41185 -12.95265 -12.72263 -12.68150 -12.59441 -12.36024 -12.18695 -12.16523 -12.04165 -11.85894 -11.66635 -11.50648 -10.63418 -9.77721 -9.51920 -8.92701 -7.72493 -5.16641 0.31009 0.40275 1.19156 1.47835 1.49409 1.58737 2.51289 2.77406 3.36738 3.67874 3.87078 4.01988 4.22565 4.44920 4.45511 4.55091 4.60533 4.79233 4.89423 4.95127 5.10458 5.13360 5.33223 5.40290 5.50071 5.55116 5.65520 5.82990 5.87970 5.95999 6.32954 7.19870 7.91788 8.31777 9.25965 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.045286 B = 0.006141 C = 0.005841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.151008 B = 4558.196467 C = 4792.357339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.201 3.799 3 H 0.074 0.926 4 C -0.083 4.083 5 C -0.105 4.105 6 C -0.111 4.111 7 C -0.118 4.118 8 C -0.043 4.043 9 Cl -0.071 7.071 10 C -0.115 4.115 11 N -0.611 5.611 12 C 0.200 3.800 13 C -0.249 4.249 14 H 0.080 0.920 15 C -0.060 4.060 16 N -0.947 5.947 17 Si 0.969 3.031 18 H -0.266 1.266 19 H -0.295 1.295 20 H -0.295 1.295 21 H 0.080 0.920 22 H 0.045 0.955 23 H 0.046 0.954 24 H 0.107 0.893 25 H 0.147 0.853 26 H 0.152 0.848 27 H 0.145 0.855 28 H 0.010 0.990 29 H 0.009 0.991 30 H 0.013 0.987 31 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.936 1.269 -14.474 14.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.094 3.906 3 H 0.092 0.908 4 C -0.085 4.085 5 C -0.124 4.124 6 C -0.129 4.129 7 C -0.137 4.137 8 C -0.069 4.069 9 Cl -0.042 7.042 10 C -0.134 4.134 11 N -0.334 5.334 12 C 0.055 3.945 13 C -0.379 4.379 14 H 0.098 0.902 15 C -0.253 4.253 16 N -0.596 5.596 17 Si 0.799 3.201 18 H -0.191 1.191 19 H -0.223 1.223 20 H -0.223 1.223 21 H 0.098 0.902 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.125 0.875 25 H 0.165 0.835 26 H 0.170 0.830 27 H 0.163 0.837 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.031 0.969 31 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.998 1.177 -14.445 14.630 hybrid contribution 0.435 0.143 1.117 1.207 sum -1.563 1.320 -13.328 13.484 Atomic orbital electron populations 1.22246 0.95841 1.01325 1.01589 1.19437 0.93527 0.94636 0.83016 0.90770 1.20739 0.94012 0.98245 0.95512 1.21206 0.95970 0.97245 0.97970 1.21319 1.00777 0.98647 0.92180 1.21219 0.91934 1.00631 0.99877 1.20982 0.92884 1.03367 0.89708 1.98341 1.67153 1.96504 1.42188 1.21149 1.00907 0.99940 0.91382 1.44215 1.62275 1.06681 1.20234 1.20492 0.96848 0.83026 0.94123 1.19742 1.26137 0.97418 0.94570 0.90200 1.25612 1.02545 0.97172 0.99964 1.70432 1.53825 1.11167 1.24215 0.85146 0.77139 0.78449 0.79409 1.19067 1.22255 1.22264 0.90151 0.93636 0.93506 0.87486 0.83501 0.83007 0.83718 0.97180 0.97198 0.96883 0.94735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.08 8.25 71.98 0.59 -4.49 16 2 C 0.20 7.83 3.06 44.25 0.14 7.96 16 3 H 0.07 2.88 7.78 -2.39 -0.02 2.87 16 4 C -0.08 -2.90 4.66 -19.87 -0.09 -2.99 16 5 C -0.11 -3.74 8.94 22.27 0.20 -3.55 16 6 C -0.11 -3.15 10.05 22.26 0.22 -2.93 16 7 C -0.12 -2.99 9.83 22.29 0.22 -2.78 16 8 C -0.04 -1.15 6.32 22.32 0.14 -1.01 16 9 Cl -0.07 -1.63 28.96 -2.72 -0.08 -1.71 16 10 C -0.11 -3.39 8.91 22.29 0.20 -3.20 16 11 N -0.61 -29.81 2.11 -706.96 -1.49 -31.30 16 12 C 0.20 10.15 7.76 127.77 0.99 11.14 16 13 C -0.25 -13.31 9.80 84.04 0.82 -12.49 16 14 H 0.08 4.09 7.67 -2.91 -0.02 4.07 16 15 C -0.06 -3.32 5.46 84.86 0.46 -2.86 16 16 N -0.95 -55.78 9.47 21.65 0.21 -55.57 16 17 Si 0.97 44.95 29.56 68.60 2.03 46.98 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 20 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 21 H 0.08 2.12 6.66 -2.39 -0.02 2.10 16 22 H 0.04 1.57 7.36 -2.39 -0.02 1.56 16 23 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.11 4.44 7.69 -2.91 -0.02 4.42 16 25 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 26 H 0.15 2.98 8.06 -2.92 -0.02 2.95 16 27 H 0.15 3.80 5.99 -2.91 -0.02 3.78 16 28 H 0.01 0.45 6.85 -2.38 -0.02 0.43 16 29 H 0.01 0.53 7.19 -2.39 -0.02 0.52 16 30 H 0.01 0.72 6.92 -2.39 -0.02 0.70 16 31 H 0.24 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -59.89 271.12 5.68 -54.21 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: 1.12 Total: 4.57 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: 3.90 Total: -17.17 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -1.29 Total: -86.87 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.08 Total: -1.71 kcal Total: -59.89 5.68 -54.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052162371.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.926 kcal (2) G-P(sol) polarization free energy of solvation -59.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds