Wall clock time and date at job start Sun Mar 29 2020 22:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47441 * 2 1 4 4 C 1.50700 * 109.46946 * 120.00135 * 2 1 3 5 5 C 1.38241 * 120.00477 * 16.41002 * 4 2 1 6 6 C 1.38217 * 120.00697 * 179.74657 * 5 4 2 7 7 C 1.38262 * 120.03004 * 0.55173 * 6 5 4 8 8 C 1.38190 * 120.01364 * 359.69964 * 7 6 5 9 9 C 1.38333 * 120.00813 * 196.68471 * 4 2 1 10 10 Cl 1.73603 * 120.01204 * 0.02562 * 9 4 2 11 11 N 1.46510 * 109.47258 * 239.99910 * 2 1 3 12 12 C 1.46493 * 119.99676 * 301.12521 * 11 2 1 13 13 C 1.36934 * 120.00136 * 121.12294 * 11 2 1 14 14 H 1.08009 * 119.99604 * 9.32171 * 13 11 2 15 15 C 1.38806 * 120.00184 * 189.03992 * 13 11 2 16 16 N 1.31621 * 119.99967 * 354.34728 * 15 13 11 17 17 Si 1.86800 * 120.00081 * 174.34420 * 15 13 11 18 18 H 1.48506 * 109.46913 * 94.99316 * 17 15 13 19 19 H 1.48499 * 109.47277 * 214.99311 * 17 15 13 20 20 H 1.48497 * 109.47165 * 334.99299 * 17 15 13 21 21 H 1.09002 * 109.46963 * 300.00392 * 1 2 3 22 22 H 1.09006 * 109.46818 * 59.99739 * 1 2 3 23 23 H 1.08999 * 109.47183 * 179.97438 * 1 2 3 24 24 H 1.07994 * 119.99424 * 0.02562 * 5 4 2 25 25 H 1.08006 * 119.98344 * 180.25398 * 6 5 4 26 26 H 1.08008 * 119.99376 * 179.72223 * 7 6 5 27 27 H 1.07999 * 120.00742 * 180.02562 * 8 7 6 28 28 H 1.09002 * 109.47029 * 236.33935 * 12 11 2 29 29 H 1.09001 * 109.47814 * 356.34275 * 12 11 2 30 30 H 1.09006 * 109.46748 * 116.34216 * 12 11 2 31 31 H 0.96994 * 120.00240 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.1800 -1.5206 1.9573 6 6 1.6420 -2.1764 3.0828 7 6 2.9535 -2.0135 3.4890 8 6 3.8050 -1.1998 2.7662 9 6 3.3447 -0.5475 1.6361 10 17 4.4135 0.4759 0.7283 11 7 2.0184 -0.6907 -1.1962 12 6 1.6442 -2.0858 -1.4405 13 6 2.8245 -0.0321 -2.0859 14 1 3.2231 0.9402 -1.8362 15 6 3.1341 -0.6166 -3.3063 16 7 2.7462 -1.8477 -3.5636 17 14 4.1013 0.3441 -4.5834 18 1 5.5444 0.0157 -4.4615 19 1 3.6240 -0.0189 -5.9420 20 1 3.9043 1.7992 -4.3620 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 0.1542 -1.6447 1.6430 25 1 0.9769 -2.8125 3.6481 26 1 3.3127 -2.5227 4.3712 27 1 4.8296 -1.0730 3.0834 28 1 2.5450 -2.6896 -1.5508 29 1 1.0583 -2.4575 -0.5998 30 1 1.0509 -2.1484 -2.3528 31 1 2.9622 -2.2560 -4.4165 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052163020.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:35 Heat of formation + Delta-G solvation = 48.323985 kcal Electronic energy + Delta-G solvation = -15282.346787 eV Core-core repulsion = 12783.689901 eV Total energy + Delta-G solvation = -2498.656886 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.15897 -35.94622 -35.72479 -32.67604 -30.36901 -29.84310 -28.19191 -26.00829 -24.02727 -22.00483 -21.86818 -19.27126 -16.84920 -16.69629 -15.18936 -14.96039 -14.70307 -13.82406 -13.53804 -13.39356 -12.90727 -12.50524 -12.28707 -11.54826 -11.42209 -11.21781 -10.92341 -10.87288 -10.79582 -10.62032 -10.27254 -10.24651 -10.13957 -9.75588 -9.60490 -8.49788 -8.43751 -8.14366 -6.84449 -5.55104 -2.96446 1.60641 1.68613 2.82895 3.43720 3.49698 3.51043 4.03755 4.58854 5.15259 5.18037 5.30315 5.54363 5.59619 5.66811 5.80969 5.95842 6.04654 6.19976 6.31475 6.39070 6.58048 6.66501 6.73103 6.86025 6.90289 7.08213 7.22182 7.72850 7.83751 8.02623 8.46372 9.35889 9.97205 10.40857 11.44575 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.028970 B = 0.009411 C = 0.008175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.280411 B = 2974.570935 C = 3424.196998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.205 3.795 3 H 0.077 0.923 4 C -0.070 4.070 5 C -0.109 4.109 6 C -0.125 4.125 7 C -0.126 4.126 8 C -0.120 4.120 9 C -0.018 4.018 10 Cl -0.059 7.059 11 N -0.590 5.590 12 C 0.171 3.829 13 C -0.228 4.228 14 H 0.075 0.925 15 C -0.007 4.007 16 N -0.919 5.919 17 Si 0.902 3.098 18 H -0.291 1.291 19 H -0.291 1.291 20 H -0.281 1.281 21 H 0.044 0.956 22 H 0.058 0.942 23 H 0.052 0.948 24 H 0.129 0.871 25 H 0.119 0.881 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.036 0.964 29 H -0.009 1.009 30 H 0.046 0.954 31 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.902 1.067 12.379 12.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.096 3.904 3 H 0.095 0.905 4 C -0.074 4.074 5 C -0.128 4.128 6 C -0.143 4.143 7 C -0.145 4.145 8 C -0.139 4.139 9 C -0.046 4.046 10 Cl -0.030 7.030 11 N -0.311 5.311 12 C 0.028 3.972 13 C -0.357 4.357 14 H 0.092 0.908 15 C -0.202 4.202 16 N -0.567 5.567 17 Si 0.733 3.267 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.207 1.207 21 H 0.063 0.937 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.147 0.853 25 H 0.137 0.863 26 H 0.139 0.861 27 H 0.141 0.859 28 H 0.054 0.946 29 H 0.009 0.991 30 H 0.064 0.936 31 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.766 1.069 12.066 12.241 hybrid contribution 0.795 0.319 -0.790 1.166 sum -0.971 1.388 11.276 11.402 Atomic orbital electron populations 1.22362 0.97838 1.01237 1.00599 1.19285 0.92225 0.95231 0.83652 0.90541 1.20924 0.92067 0.97698 0.96712 1.21160 1.00037 0.96788 0.94836 1.21134 0.95832 0.99951 0.97375 1.20914 0.93930 0.99572 1.00084 1.20970 1.00031 0.98023 0.94873 1.20834 0.91861 0.97622 0.94235 1.98375 1.64332 1.66214 1.74049 1.44065 1.56878 1.10082 1.20062 1.20998 0.97948 0.83341 0.94958 1.19330 1.21727 1.00485 0.94193 0.90755 1.24834 1.00919 0.96607 0.97858 1.70216 1.51028 1.12327 1.23144 0.86240 0.79513 0.79298 0.81623 1.21843 1.21762 1.20678 0.93713 0.92285 0.92871 0.85331 0.86333 0.86131 0.85864 0.94564 0.99081 0.93551 0.94165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 8.02 37.16 0.30 -2.54 16 2 C 0.20 4.20 2.25 -69.08 -0.16 4.04 16 3 H 0.08 1.60 7.16 -51.93 -0.37 1.23 16 4 C -0.07 -1.32 4.74 -104.59 -0.50 -1.81 16 5 C -0.11 -1.76 8.48 -39.59 -0.34 -2.10 16 6 C -0.12 -1.74 10.05 -39.58 -0.40 -2.14 16 7 C -0.13 -1.74 10.05 -39.59 -0.40 -2.14 16 8 C -0.12 -1.88 9.83 -39.55 -0.39 -2.27 16 9 C -0.02 -0.34 6.31 -39.50 -0.25 -0.59 16 10 Cl -0.06 -1.14 26.40 -51.86 -1.37 -2.51 16 11 N -0.59 -14.60 2.79 -174.81 -0.49 -15.09 16 12 C 0.17 4.34 8.12 59.84 0.49 4.82 16 13 C -0.23 -6.18 8.89 -15.06 -0.13 -6.32 16 14 H 0.07 1.98 7.41 -52.48 -0.39 1.59 16 15 C -0.01 -0.19 5.46 -17.43 -0.10 -0.29 16 16 N -0.92 -26.94 9.48 55.49 0.53 -26.42 16 17 Si 0.90 22.42 29.56 -169.99 -5.02 17.40 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H 0.04 0.66 8.13 -51.93 -0.42 0.24 16 22 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.05 0.92 5.73 -51.93 -0.30 0.62 16 24 H 0.13 1.90 5.96 -52.49 -0.31 1.58 16 25 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 26 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 27 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 28 H 0.04 1.02 7.22 -51.93 -0.38 0.64 16 29 H -0.01 -0.21 6.19 -51.93 -0.32 -0.53 16 30 H 0.05 1.27 6.89 -51.93 -0.36 0.91 16 31 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 267.06 15.07 4.02 4.02 Total: -1.00 -29.49 267.06 -7.87 -37.36 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: -3.67 Total: -3.45 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -1.87 Total: -11.32 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.04 Total: -41.50 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.37 Total: -2.51 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.49 -7.87 -37.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052163020.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.686 kcal (2) G-P(sol) polarization free energy of solvation -29.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds