Wall clock time and date at job start Sun Mar 29 2020 22:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99970 * 2 1 4 4 H 1.48504 * 109.47023 * 269.99745 * 3 2 1 5 5 H 1.48502 * 109.47442 * 29.99705 * 3 2 1 6 6 H 1.48498 * 109.47139 * 149.99933 * 3 2 1 7 7 C 1.37876 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99652 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00428 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47466 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46983 * 180.02562 * 10 9 7 12 12 C 1.34780 * 119.99566 * 180.02562 * 11 10 9 13 13 O 1.21280 * 120.00423 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99795 * 180.02562 * 12 11 10 15 15 C 1.50703 * 109.47064 * 179.97438 * 14 12 11 16 16 C 1.33384 * 125.20349 * 89.99907 * 15 14 12 17 17 C 1.38424 * 114.92035 * 179.97438 * 16 15 14 18 18 C 1.33386 * 114.92099 * 359.97438 * 17 16 15 19 19 S 1.75881 * 125.19973 * 269.69178 * 15 14 12 20 20 H 0.97006 * 119.99550 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 22 22 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 23 23 H 1.09001 * 109.46832 * 60.00036 * 10 9 7 24 24 H 1.09002 * 109.47153 * 300.00227 * 10 9 7 25 25 H 0.96995 * 120.00423 * 359.97438 * 11 10 9 26 26 H 1.09002 * 109.47060 * 299.99722 * 14 12 11 27 27 H 1.09001 * 109.47380 * 59.99809 * 14 12 11 28 28 H 1.08005 * 122.54108 * 359.95242 * 16 15 14 29 29 H 1.08005 * 122.53921 * 180.02562 * 17 16 15 30 30 H 1.08002 * 125.20183 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0001 11 7 5.4866 -2.6365 0.0001 12 6 6.1604 -3.8038 -0.0003 13 8 5.5540 -4.8541 -0.0002 14 6 7.6674 -3.8038 0.0003 15 6 8.1698 -5.2246 0.0003 16 6 8.4265 -5.9494 -1.0895 17 6 8.8809 -7.2334 -0.8424 18 6 8.9937 -7.5510 0.4481 19 16 8.5144 -6.1781 1.4375 20 1 -0.4850 0.8401 -0.0004 21 1 3.8752 -0.6797 0.8895 22 1 3.8746 -0.6808 -0.8905 23 1 3.6579 -3.1506 -0.8897 24 1 3.6586 -3.1502 0.8903 25 1 5.9716 -1.7965 -0.0003 26 1 8.0311 -3.2894 -0.8892 27 1 8.0304 -3.2904 0.8908 28 1 8.2898 -5.5639 -2.0891 29 1 9.1264 -7.9253 -1.6346 30 1 9.3315 -8.5041 0.8275 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054137840.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:00 Heat of formation + Delta-G solvation = -15.448931 kcal Electronic energy + Delta-G solvation = -13942.715777 eV Core-core repulsion = 11443.337195 eV Total energy + Delta-G solvation = -2499.378581 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.47212 -37.66826 -34.99605 -32.86515 -32.23208 -30.11829 -27.28448 -24.81800 -23.20957 -20.83886 -20.32060 -19.28035 -17.26424 -16.98061 -16.66784 -15.69270 -15.18314 -14.90373 -14.20222 -13.77886 -13.56084 -12.97439 -12.73026 -12.64712 -12.55070 -12.39950 -11.64251 -11.50042 -11.19769 -10.80170 -10.40820 -10.28658 -9.98160 -9.59443 -9.32738 -8.68642 -8.65740 -8.55017 -8.47849 -6.12181 -4.12467 0.93527 1.59075 1.95540 2.68815 2.90416 3.24057 3.31654 3.32893 3.65030 4.36446 4.55213 4.97415 5.02849 5.11927 5.20624 5.29436 5.51401 5.52637 6.04484 6.09539 6.19165 6.22400 6.42362 6.54416 6.73038 7.11957 7.21517 7.65327 7.87271 8.42188 8.54950 8.92204 9.47768 11.00887 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.062568 B = 0.004072 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.405668 B = 6874.919131 C = 6987.040890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.524 4.524 8 H 0.075 0.925 9 C -0.022 4.022 10 C 0.130 3.870 11 N -0.727 5.727 12 C 0.505 3.495 13 O -0.535 6.535 14 C -0.074 4.074 15 C -0.150 4.150 16 C -0.133 4.133 17 C -0.132 4.132 18 C -0.219 4.219 19 S 0.105 5.895 20 H 0.265 0.735 21 H 0.022 0.978 22 H 0.017 0.983 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.396 0.604 26 H 0.111 0.889 27 H 0.102 0.898 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.959 -8.481 0.149 22.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.008 3.992 11 N -0.378 5.378 12 C 0.289 3.711 13 O -0.411 6.411 14 C -0.116 4.116 15 C -0.268 4.268 16 C -0.163 4.163 17 C -0.163 4.163 18 C -0.354 4.354 19 S 0.369 5.631 20 H 0.075 0.925 21 H 0.040 0.960 22 H 0.036 0.964 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.230 0.770 26 H 0.129 0.871 27 H 0.120 0.880 28 H 0.155 0.845 29 H 0.156 0.844 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 20.246 -8.877 1.717 22.173 hybrid contribution 0.562 1.020 -1.554 1.942 sum 20.808 -7.857 0.163 22.243 Atomic orbital electron populations 1.69911 1.06301 1.27060 1.50387 1.25008 0.94773 0.99166 0.94362 0.86742 0.80250 0.83518 0.78498 1.20218 1.21254 1.19089 1.20924 0.88672 0.94905 1.51690 0.90642 1.19793 0.98007 0.91336 0.96822 1.21509 0.75951 1.00115 1.01626 1.46311 1.09196 1.07751 1.74496 1.20375 0.89144 0.84370 0.77174 1.90720 1.70086 1.31228 1.49094 1.20213 0.93543 0.92415 1.05431 1.23816 1.07376 0.99504 0.96094 1.20060 1.02797 0.94203 0.99223 1.20111 1.02866 0.96898 0.96387 1.25562 1.10090 1.02857 0.96930 1.84199 1.63798 1.05515 1.09610 0.92538 0.95986 0.96430 0.91974 0.91962 0.77046 0.87124 0.87976 0.84465 0.84439 0.82082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.96 55.43 0.77 -26.56 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 20.91 27.47 -169.99 -4.67 16.24 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 7 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 8 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16 9 C -0.02 -0.50 4.16 -27.89 -0.12 -0.61 16 10 C 0.13 2.65 5.61 -4.04 -0.02 2.62 16 11 N -0.73 -11.60 5.56 -60.30 -0.33 -11.94 16 12 C 0.51 8.04 7.82 -10.98 -0.09 7.96 16 13 O -0.53 -10.86 16.03 5.56 0.09 -10.77 16 14 C -0.07 -0.83 6.19 -29.03 -0.18 -1.01 16 15 C -0.15 -1.87 5.00 -36.00 -0.18 -2.05 16 16 C -0.13 -1.57 10.05 -41.21 -0.41 -1.98 16 17 C -0.13 -1.41 10.18 -41.21 -0.42 -1.83 16 18 C -0.22 -2.29 11.23 29.04 0.33 -1.96 16 19 S 0.11 1.23 23.33 -107.50 -2.51 -1.28 16 20 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 21 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 22 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 23 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 24 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 25 H 0.40 5.07 8.47 -40.82 -0.35 4.73 16 26 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.14 1.43 8.06 -52.48 -0.42 1.00 16 29 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 30 H 0.16 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 278.76 15.07 4.20 4.20 Total: -1.00 -33.13 278.76 -7.63 -40.76 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -3.66 Total: 1.34 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -1.52 Total: -11.99 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.44 Total: -38.50 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.51 Total: -1.28 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -33.13 -7.63 -40.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137840.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.306 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds